RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 DCAF8L1A6NGE4 600 aa24.74■■□□□ 1.55
CLN3-225ENST00000566824 USP44Q9H0E7 712 aa24.74■■□□□ 1.55
CLN3-225ENST00000566824 SEC31BQ9NQW1 1179 aa24.74■■□□□ 1.55
CLN3-225ENST00000566824 IPO8O15397 1037 aaKnown RBP24.73■■□□□ 1.55
CLN3-225ENST00000566824 CTSWP56202 376 aa24.73■■□□□ 1.55
CLN3-225ENST00000566824 ZKSCAN2Q63HK3 967 aa24.73■■□□□ 1.55
CLN3-225ENST00000566824 KAZALD1Q96I82 304 aa24.73■■□□□ 1.55
CLN3-225ENST00000566824 C9orf78Q9NZ63 289 aaPredicted RBP24.73■■□□□ 1.55
CLN3-225ENST00000566824 FER1L6Q2WGJ9 1857 aa24.73■■□□□ 1.55
CLN3-225ENST00000566824 UTYO14607 1347 aa24.72■■□□□ 1.55
CLN3-225ENST00000566824 GRIN3BO60391 1043 aa24.72■■□□□ 1.55
CLN3-225ENST00000566824 RLBP1P12271 317 aa24.72■■□□□ 1.55
CLN3-225ENST00000566824 ALDH1B1P30837 517 aa24.72■■□□□ 1.55
CLN3-225ENST00000566824 FOXO4P98177 505 aa24.72■■□□□ 1.55
CLN3-225ENST00000566824 ARHGAP27Q6ZUM4 889 aa24.72■■□□□ 1.55
CLN3-225ENST00000566824 TTLL11Q8NHH1 800 aa24.72■■□□□ 1.55
CLN3-225ENST00000566824 SUCLG2Q96I99 432 aa24.72■■□□□ 1.55
CLN3-225ENST00000566824 PLA2G12BQ9BX93 195 aa24.72■■□□□ 1.55
CLN3-225ENST00000566824 CHD4Q14839 1912 aa24.72■■□□□ 1.55
CLN3-225ENST00000566824 SPEF2Q9C093 1822 aa24.71■■□□□ 1.55
CLN3-225ENST00000566824 CCT4P50991 539 aaKnown RBP24.71■■□□□ 1.55
CLN3-225ENST00000566824 INTS3Q68E01 1043 aaKnown RBP24.71■■□□□ 1.55
CLN3-225ENST00000566824 DDX46Q7L014 1031 aaKnown RBP24.71■■□□□ 1.55
CLN3-225ENST00000566824 CELF1Q92879 486 aaKnown RBP24.71■■□□□ 1.55
CLN3-225ENST00000566824 PLIN1O60240 522 aa24.7■■□□□ 1.54
CLN3-225ENST00000566824 SBF1O95248 1867 aa24.7■■□□□ 1.54
CLN3-225ENST00000566824 GREM2Q9H772 168 aa24.7■■□□□ 1.54
CLN3-225ENST00000566824 CCDC88AQ3V6T2 1871 aa24.69■■□□□ 1.54
CLN3-225ENST00000566824 PRELPP51888 382 aa24.69■■□□□ 1.54
CLN3-225ENST00000566824 RASSF7Q02833 373 aa24.69■■□□□ 1.54
CLN3-225ENST00000566824 GRAPQ13588 217 aa24.69■■□□□ 1.54
CLN3-225ENST00000566824 TMEM57Q8N5G2 664 aa24.69■■□□□ 1.54
CLN3-225ENST00000566824 GRAPLQ8TC17 118 aaPredicted RBP24.69■■□□□ 1.54
CLN3-225ENST00000566824 SNED1Q8TER0 1413 aa24.68■■□□□ 1.54
CLN3-225ENST00000566824 NFKBIEO00221 500 aa24.68■■□□□ 1.54
CLN3-225ENST00000566824 PPEF1O14829 653 aaPredicted RBP24.68■■□□□ 1.54
CLN3-225ENST00000566824 CSF1RP07333 972 aa24.68■■□□□ 1.54
CLN3-225ENST00000566824 CCDC152Q4G0S7 254 aa24.68■■□□□ 1.54
CLN3-225ENST00000566824 HSP90B1P14625 803 aaKnown RBP24.67■■□□□ 1.54
CLN3-225ENST00000566824 FAM161AQ3B820 660 aa24.66■■□□□ 1.54
CLN3-225ENST00000566824 PANK1Q8TE04 598 aa24.66■■□□□ 1.54
CLN3-225ENST00000566824 MEIS3Q99687 375 aa24.66■■□□□ 1.54
CLN3-225ENST00000566824 LRRC37AA6NMS7 1700 aa24.66■■□□□ 1.54
CLN3-225ENST00000566824 LMBR1LQ6UX01 489 aa24.65■■□□□ 1.54
CLN3-225ENST00000566824 BBOX1O75936 387 aa24.64■■□□□ 1.54
CLN3-225ENST00000566824 DZIP1LQ8IYY4 767 aaKnown RBP24.64■■□□□ 1.54
CLN3-225ENST00000566824 ANKRD44Q8N8A2 993 aa24.64■■□□□ 1.54
CLN3-225ENST00000566824 BICC1Q9H694 974 aaKnown RBP24.64■■□□□ 1.54
CLN3-225ENST00000566824 RTL9Q8NET4 1388 aa24.64■■□□□ 1.53
CLN3-225ENST00000566824 RPS8P62241 208 aaKnown RBP24.63■■□□□ 1.53
CLN3-225ENST00000566824 ATP6V0A2Q9Y487 856 aa24.63■■□□□ 1.53
CLN3-225ENST00000566824 CCDC93Q567U6 631 aa24.62■■□□□ 1.53
CLN3-225ENST00000566824 ITGA6P23229 1130 aa24.61■■□□□ 1.53
CLN3-225ENST00000566824 C20orf194Q5TEA3 1177 aa24.61■■□□□ 1.53
CLN3-225ENST00000566824 SP8Q8IXZ3 490 aa24.61■■□□□ 1.53
CLN3-225ENST00000566824 FTSJ3Q8IY81 847 aaKnown RBP24.61■■□□□ 1.53
CLN3-225ENST00000566824 CHMP3Q9Y3E7 222 aa24.61■■□□□ 1.53
CLN3-225ENST00000566824 UBTFL1P0CB47 393 aaPredicted RBP24.6■■□□□ 1.53
CLN3-225ENST00000566824 RABL6Q3YEC7 729 aaPredicted RBP24.6■■□□□ 1.53
CLN3-225ENST00000566824 LTBP1Q14766 1721 aa24.59■■□□□ 1.53
CLN3-225ENST00000566824 DUOX1Q9NRD9 1551 aa24.59■■□□□ 1.53
CLN3-225ENST00000566824 SOGA3Q5TF21 947 aa24.59■■□□□ 1.53
CLN3-225ENST00000566824 ANKRD18AQ8IVF6 992 aa24.59■■□□□ 1.53
CLN3-225ENST00000566824 ZNF594Q96JF6 807 aaPredicted RBP24.59■■□□□ 1.53
CLN3-225ENST00000566824 LRRFIP2Q9Y608 721 aaKnown RBP24.59■■□□□ 1.53
CLN3-225ENST00000566824 C9orf131Q5VYM1 1079 aa24.58■■□□□ 1.52
CLN3-225ENST00000566824 ITPRIPQ8IWB1 547 aa24.58■■□□□ 1.52
CLN3-225ENST00000566824 DICER1Q9UPY3 1922 aaKnown RBP24.58■■□□□ 1.52
CLN3-225ENST00000566824 GPSM2P81274 684 aa24.57■■□□□ 1.52
CLN3-225ENST00000566824 FKBP4Q02790 459 aaKnown RBP eCLIP24.57■■□□□ 1.52
CLN3-225ENST00000566824 RTKN2Q8IZC4 609 aa24.57■■□□□ 1.52
CLN3-225ENST00000566824 TAOK3Q9H2K8 898 aa24.57■■□□□ 1.52
CLN3-225ENST00000566824 ZNF277Q9NRM2 450 aaPredicted RBP24.57■■□□□ 1.52
CLN3-225ENST00000566824 LTBP3Q9NS15 1303 aa24.57■■□□□ 1.52
CLN3-225ENST00000566824 COL4A5P29400 1685 aa24.56■■□□□ 1.52
CLN3-225ENST00000566824 A0A1B0GUL6 1792 aa24.56■■□□□ 1.52
CLN3-225ENST00000566824 ANKRD18BA2A2Z9 1011 aa24.56■■□□□ 1.52
CLN3-225ENST00000566824 CC2D2BQ6DHV5 1058 aa24.56■■□□□ 1.52
CLN3-225ENST00000566824 CDC5LQ99459 802 aaKnown RBP24.56■■□□□ 1.52
CLN3-225ENST00000566824 WTIPA6NIX2 430 aaPredicted RBP24.55■■□□□ 1.52
CLN3-225ENST00000566824 IFIT5Q13325 482 aaKnown RBP24.55■■□□□ 1.52
CLN3-225ENST00000566824 TMC4Q7Z404 712 aa24.55■■□□□ 1.52
CLN3-225ENST00000566824 RNF181Q9P0P0 153 aa24.55■■□□□ 1.52
CLN3-225ENST00000566824 COG6Q9Y2V7 657 aa24.55■■□□□ 1.52
CLN3-225ENST00000566824 TIAM2Q8IVF5 1701 aa24.54■■□□□ 1.52
CLN3-225ENST00000566824 ZBTB7BO15156 539 aaPredicted RBP24.54■■□□□ 1.52
CLN3-225ENST00000566824 GNAI3P08754 354 aa24.54■■□□□ 1.52
CLN3-225ENST00000566824 LMNB1P20700 586 aa24.54■■□□□ 1.52
CLN3-225ENST00000566824 MPNDQ8N594 471 aa24.54■■□□□ 1.52
CLN3-225ENST00000566824 KLHDC4Q8TBB5 520 aa24.54■■□□□ 1.52
CLN3-225ENST00000566824 BSDC1Q9NW68 430 aaPredicted RBP24.54■■□□□ 1.52
CLN3-225ENST00000566824 CCDC57Q2TAC2 916 aa24.53■■□□□ 1.52
CLN3-225ENST00000566824 GPR101Q96P66 508 aaPredicted RBP24.53■■□□□ 1.52
CLN3-225ENST00000566824 PSMD1Q99460 953 aa24.53■■□□□ 1.52
CLN3-225ENST00000566824 PUS3Q9BZE2 481 aaKnown RBP24.53■■□□□ 1.52
CLN3-225ENST00000566824 C1orf115Q9H7X2 142 aa24.53■■□□□ 1.52
CLN3-225ENST00000566824 MINPP1Q9UNW1 487 aa24.53■■□□□ 1.52
CLN3-225ENST00000566824 RFX5P48382 616 aaPredicted RBP24.52■■□□□ 1.52
CLN3-225ENST00000566824 DPP8Q6V1X1 898 aaPredicted RBP24.52■■□□□ 1.52
CLN3-225ENST00000566824 NSFL1CQ9UNZ2 370 aaKnown RBP24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms