RNA–Protein interactions for RNA: ENST00000565834.1

COMMD4-213, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-213ENST00000565834 GTF2E1P29083 439 aaPredicted RBP23.19■■□□□ 1.3
COMMD4-213ENST00000565834 TTLL11Q8NHH1 800 aa23.19■■□□□ 1.3
COMMD4-213ENST00000565834 PTPN12Q05209 780 aaKnown RBP23.19■■□□□ 1.3
COMMD4-213ENST00000565834 G3BP1Q13283 466 aaKnown RBP eCLIP23.19■■□□□ 1.32e-6■□□□□ 9.5
COMMD4-213ENST00000565834 FAM161AQ3B820 660 aa23.19■■□□□ 1.3
COMMD4-213ENST00000565834 ERFEQ4G0M1 354 aa23.19■■□□□ 1.3
COMMD4-213ENST00000565834 ERC1Q8IUD2 1116 aa23.19■■□□□ 1.3
COMMD4-213ENST00000565834 KLHDC4Q8TBB5 520 aa23.19■■□□□ 1.3
COMMD4-213ENST00000565834 KIF1BPQ96EK5 621 aa23.19■■□□□ 1.3
COMMD4-213ENST00000565834 CASZ1Q86V15 1759 aa23.18■■□□□ 1.3
COMMD4-213ENST00000565834 CCDC57Q2TAC2 916 aa23.18■■□□□ 1.3
COMMD4-213ENST00000565834 TPTE2Q6XPS3 522 aa23.18■■□□□ 1.3
COMMD4-213ENST00000565834 SIL1Q9H173 461 aa23.18■■□□□ 1.3
COMMD4-213ENST00000565834 RHPN1Q8TCX5 695 aa23.17■■□□□ 1.3
COMMD4-213ENST00000565834 CCDC85AQ96PX6 553 aaPredicted RBP23.17■■□□□ 1.3
COMMD4-213ENST00000565834 BCL11AQ9H165 835 aa23.17■■□□□ 1.3
COMMD4-213ENST00000565834 IFIT5Q13325 482 aaKnown RBP23.16■■□□□ 1.3
COMMD4-213ENST00000565834 NPHP1O15259 732 aa23.16■■□□□ 1.3
COMMD4-213ENST00000565834 GREM2Q9H772 168 aa23.16■■□□□ 1.3
COMMD4-213ENST00000565834 ABCC12Q96J65 1359 aa23.15■■□□□ 1.3
COMMD4-213ENST00000565834 TM4SF1P30408 202 aa23.15■■□□□ 1.3
COMMD4-213ENST00000565834 SLC10A5Q5PT55 438 aa23.15■■□□□ 1.3
COMMD4-213ENST00000565834 NLGN1Q8N2Q7 840 aa23.15■■□□□ 1.3
COMMD4-213ENST00000565834 ANKRD18BA2A2Z9 1011 aa23.13■■□□□ 1.29
COMMD4-213ENST00000565834 ITGA6P23229 1130 aa23.13■■□□□ 1.29
COMMD4-213ENST00000565834 CCDC152Q4G0S7 254 aa23.13■■□□□ 1.29
COMMD4-213ENST00000565834 TAF7LQ5H9L4 462 aa23.13■■□□□ 1.29
COMMD4-213ENST00000565834 CNBD1Q8NA66 436 aa23.13■■□□□ 1.29
COMMD4-213ENST00000565834 IL1RAPL2Q9NP60 686 aa23.13■■□□□ 1.29
COMMD4-213ENST00000565834 ZNF594Q96JF6 807 aaPredicted RBP23.13■■□□□ 1.29
COMMD4-213ENST00000565834 C16orf71Q8IYS4 520 aaPredicted RBP23.12■■□□□ 1.29
COMMD4-213ENST00000565834 RTL9Q8NET4 1388 aa23.12■■□□□ 1.29
COMMD4-213ENST00000565834 SASH1O94885 1247 aa23.11■■□□□ 1.29
COMMD4-213ENST00000565834 SERPINB2P05120 415 aa23.11■■□□□ 1.29
COMMD4-213ENST00000565834 EYA2O00167 538 aa23.1■■□□□ 1.29
COMMD4-213ENST00000565834 CIAO1O76071 339 aa23.1■■□□□ 1.29
COMMD4-213ENST00000565834 DDR1Q08345 913 aa23.1■■□□□ 1.29
COMMD4-213ENST00000565834 FBXO3Q9UK99 471 aa23.1■■□□□ 1.29
COMMD4-213ENST00000565834 POLRMTO00411 1230 aaKnown RBP23.09■■□□□ 1.29
COMMD4-213ENST00000565834 SF3B3Q15393 1217 aaKnown RBP23.09■■□□□ 1.29
COMMD4-213ENST00000565834 PLEKHM2Q8IWE5 1019 aa23.09■■□□□ 1.29
COMMD4-213ENST00000565834 CLASRPQ8N2M8 674 aaKnown RBP23.09■■□□□ 1.29
COMMD4-213ENST00000565834 OTUD7AQ8TE49 926 aaPredicted RBP23.09■■□□□ 1.29
COMMD4-213ENST00000565834 NLRP3Q96P20 1036 aa23.09■■□□□ 1.29
COMMD4-213ENST00000565834 TNRC6CQ9HCJ0 1690 aaKnown RBP23.09■■□□□ 1.29
COMMD4-213ENST00000565834 IL15P40933 162 aaPredicted RBP23.09■■□□□ 1.29
COMMD4-213ENST00000565834 PRR5LQ6MZQ0 368 aa23.09■■□□□ 1.29
COMMD4-213ENST00000565834 CCDC24Q8N4L8 307 aa23.09■■□□□ 1.29
COMMD4-213ENST00000565834 RIC1Q4ADV7 1423 aa23.08■■□□□ 1.29
COMMD4-213ENST00000565834 SPEF2Q9C093 1822 aa23.08■■□□□ 1.29
COMMD4-213ENST00000565834 ST5P78524 1137 aa23.08■■□□□ 1.29
COMMD4-213ENST00000565834 C3orf67Q6ZVT6 689 aa23.08■■□□□ 1.29
COMMD4-213ENST00000565834 ATG9AQ7Z3C6 839 aa23.08■■□□□ 1.29
COMMD4-213ENST00000565834 UPF1Q92900 1129 aaKnown RBP eCLIP23.08■■□□□ 1.297e-14■■■■■ 92.7
COMMD4-213ENST00000565834 LRP5O75197 1615 aa23.08■■□□□ 1.28
COMMD4-213ENST00000565834 NRXN2Q9P2S2 1712 aa23.07■■□□□ 1.28
COMMD4-213ENST00000565834 LRRC24Q50LG9 513 aa23.07■■□□□ 1.28
COMMD4-213ENST00000565834 TFCP2Q12800 502 aa23.06■■□□□ 1.28
COMMD4-213ENST00000565834 PUS3Q9BZE2 481 aaKnown RBP23.06■■□□□ 1.28
COMMD4-213ENST00000565834 SEC31BQ9NQW1 1179 aa23.06■■□□□ 1.28
COMMD4-213ENST00000565834 SALL3Q9BXA9 1300 aa23.06■■□□□ 1.28
COMMD4-213ENST00000565834 MSL1Q68DK7 614 aa23.06■■□□□ 1.28
COMMD4-213ENST00000565834 LDHAL6AQ6ZMR3 332 aa23.06■■□□□ 1.28
COMMD4-213ENST00000565834 MMP10P09238 476 aa23.05■■□□□ 1.28
COMMD4-213ENST00000565834 MX1P20591 662 aa23.05■■□□□ 1.28
COMMD4-213ENST00000565834 AACSQ86V21 672 aa23.05■■□□□ 1.28
COMMD4-213ENST00000565834 CDC5LQ99459 802 aaKnown RBP23.05■■□□□ 1.28
COMMD4-213ENST00000565834 CNNM1Q9NRU3 951 aa23.05■■□□□ 1.28
COMMD4-213ENST00000565834 IFIT2P09913 472 aaKnown RBP23.04■■□□□ 1.28
COMMD4-213ENST00000565834 PDE1AP54750 535 aa23.04■■□□□ 1.28
COMMD4-213ENST00000565834 PARP3Q9Y6F1 533 aa23.04■■□□□ 1.28
COMMD4-213ENST00000565834 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.04■■□□□ 1.28
COMMD4-213ENST00000565834 TAF1P21675 1872 aa23.04■■□□□ 1.28
COMMD4-213ENST00000565834 SOCS7O14512 581 aa23.03■■□□□ 1.28
COMMD4-213ENST00000565834 IGHMBP2P38935 993 aaKnown RBP23.03■■□□□ 1.28
COMMD4-213ENST00000565834 OSBPL3Q9H4L5 887 aa23.03■■□□□ 1.28
COMMD4-213ENST00000565834 EAF2Q96CJ1 260 aaPredicted RBP23.03■■□□□ 1.28
COMMD4-213ENST00000565834 MPHOSPH8Q99549 860 aa23.03■■□□□ 1.28
COMMD4-213ENST00000565834 CEP126Q9P2H0 1117 aa23.03■■□□□ 1.28
COMMD4-213ENST00000565834 TNNI3KQ59H18 835 aa23.02■■□□□ 1.28
COMMD4-213ENST00000565834 STAP2Q9UGK3 403 aa23.02■■□□□ 1.28
COMMD4-213ENST00000565834 RIPOR2Q9Y4F9 1068 aa23.02■■□□□ 1.28
COMMD4-213ENST00000565834 FPGT-TNNI3KV9GXZ4 949 aa23.02■■□□□ 1.28
COMMD4-213ENST00000565834 BMP2KLQ5H9B9 411 aa23.01■■□□□ 1.27
COMMD4-213ENST00000565834 TTC22Q5TAA0 569 aa23.01■■□□□ 1.27
COMMD4-213ENST00000565834 GPR108Q9NPR9 543 aa23.01■■□□□ 1.27
COMMD4-213ENST00000565834 ANKRD31Q8N7Z5 1873 aa23.01■■□□□ 1.27
COMMD4-213ENST00000565834 AOX1Q06278 1338 aa23.01■■□□□ 1.27
COMMD4-213ENST00000565834 METTL24Q5JXM2 366 aa23■■□□□ 1.27
COMMD4-213ENST00000565834 ANKRD18AQ8IVF6 992 aa23■■□□□ 1.27
COMMD4-213ENST00000565834 COL4A1P02462 1669 aa23■■□□□ 1.27
COMMD4-213ENST00000565834 DDX46Q7L014 1031 aaKnown RBP23■■□□□ 1.27
COMMD4-213ENST00000565834 GPATCH3Q96I76 525 aa23■■□□□ 1.27
COMMD4-213ENST00000565834 CCDC8Q9H0W5 538 aaPredicted RBP23■■□□□ 1.27
COMMD4-213ENST00000565834 TSHZ3Q63HK5 1081 aa22.99■■□□□ 1.27
COMMD4-213ENST00000565834 SLC16A10Q8TF71 515 aa22.99■■□□□ 1.27
COMMD4-213ENST00000565834 PDGFDQ9GZP0 370 aaPredicted RBP22.99■■□□□ 1.27
COMMD4-213ENST00000565834 ZNF609O15014 1411 aa22.99■■□□□ 1.27
COMMD4-213ENST00000565834 TTC41PQ6P2S7 1318 aa22.98■■□□□ 1.27
COMMD4-213ENST00000565834 MROH5Q6ZUA9 1318 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms