RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PI4KAP2A4QPH2 592 aa26.62■■□□□ 1.85
CLN3-219ENST00000565778 PPIP5K2O43314 1243 aa26.62■■□□□ 1.85
CLN3-219ENST00000565778 HSP90B1P14625 803 aaKnown RBP26.62■■□□□ 1.85
CLN3-219ENST00000565778 PI4KAP1Q8N8J0 262 aa26.62■■□□□ 1.85
CLN3-219ENST00000565778 VPS33BQ9H267 617 aa26.62■■□□□ 1.85
CLN3-219ENST00000565778 GJA3Q9Y6H8 435 aa26.62■■□□□ 1.85
CLN3-219ENST00000565778 FANCIQ9NVI1 1328 aa26.62■■□□□ 1.85
CLN3-219ENST00000565778 HTRA3P83110 453 aa26.61■■□□□ 1.85
CLN3-219ENST00000565778 AOC3Q16853 763 aa26.61■■□□□ 1.85
CLN3-219ENST00000565778 TMC4Q7Z404 712 aa26.61■■□□□ 1.85
CLN3-219ENST00000565778 NIM1KQ8IY84 436 aa26.61■■□□□ 1.85
CLN3-219ENST00000565778 GPC2Q8N158 579 aa26.61■■□□□ 1.85
CLN3-219ENST00000565778 JARID2Q92833 1246 aaPredicted RBP26.61■■□□□ 1.85
CLN3-219ENST00000565778 TAF1DQ9H5J8 278 aaPredicted RBP26.61■■□□□ 1.85
CLN3-219ENST00000565778 PCCAP05165 728 aaPredicted RBP26.6■■□□□ 1.85
CLN3-219ENST00000565778 DNAJC5GQ8N7S2 189 aa26.6■■□□□ 1.85
CLN3-219ENST00000565778 HACL1Q9UJ83 578 aa26.6■■□□□ 1.85
CLN3-219ENST00000565778 POTEIP0CG38 1075 aa26.59■■□□□ 1.85
CLN3-219ENST00000565778 POTEJP0CG39 1038 aa26.59■■□□□ 1.85
CLN3-219ENST00000565778 EXOSC9Q06265 439 aaKnown RBP26.59■■□□□ 1.85
CLN3-219ENST00000565778 NEXNQ0ZGT2 675 aa26.59■■□□□ 1.85
CLN3-219ENST00000565778 CHADLQ6NUI6 762 aa26.59■■□□□ 1.85
CLN3-219ENST00000565778 G2E3Q7L622 706 aa26.59■■□□□ 1.85
CLN3-219ENST00000565778 CELF1Q92879 486 aaKnown RBP26.59■■□□□ 1.85
CLN3-219ENST00000565778 RTFDC1Q9BY42 306 aaPredicted RBP26.59■■□□□ 1.85
CLN3-219ENST00000565778 VAMP4O75379 141 aa26.58■■□□□ 1.85
CLN3-219ENST00000565778 EAPPQ56P03 285 aaPredicted RBP26.58■■□□□ 1.85
CLN3-219ENST00000565778 CLEC11AQ9Y240 323 aa26.57■■□□□ 1.84
CLN3-219ENST00000565778 LAMB2P55268 1798 aa26.56■■□□□ 1.84
CLN3-219ENST00000565778 PDE8AO60658 829 aa26.56■■□□□ 1.84
CLN3-219ENST00000565778 EPHX2P34913 555 aa26.56■■□□□ 1.84
CLN3-219ENST00000565778 RPS8P62241 208 aaKnown RBP26.56■■□□□ 1.84
CLN3-219ENST00000565778 MYH16Q9H6N6 1097 aa26.56■■□□□ 1.84
CLN3-219ENST00000565778 SPINK5Q9NQ38 1064 aaPredicted RBP26.56■■□□□ 1.84
CLN3-219ENST00000565778 NSFL1CQ9UNZ2 370 aaKnown RBP26.56■■□□□ 1.84
CLN3-219ENST00000565778 IGKV5-2P06315 115 aa26.55■■□□□ 1.84
CLN3-219ENST00000565778 LDHDQ86WU2 507 aa26.55■■□□□ 1.84
CLN3-219ENST00000565778 CCDC152Q4G0S7 254 aa26.54■■□□□ 1.84
CLN3-219ENST00000565778 PNMA8AQ86V59 439 aaPredicted RBP26.54■■□□□ 1.84
CLN3-219ENST00000565778 ZNRF3Q9ULT6 936 aa26.54■■□□□ 1.84
CLN3-219ENST00000565778 COL4A5P29400 1685 aa26.54■■□□□ 1.84
CLN3-219ENST00000565778 LMOD1P29536 600 aaPredicted RBP26.53■■□□□ 1.84
CLN3-219ENST00000565778 KIAA2012Q0VF49 1180 aa26.53■■□□□ 1.84
CLN3-219ENST00000565778 FLIIQ13045 1269 aa26.53■■□□□ 1.84
CLN3-219ENST00000565778 CCDC85AQ96PX6 553 aaPredicted RBP26.53■■□□□ 1.84
CLN3-219ENST00000565778 SEC31BQ9NQW1 1179 aa26.53■■□□□ 1.84
CLN3-219ENST00000565778 DDX60Q8IY21 1712 aaKnown RBP26.53■■□□□ 1.84
CLN3-219ENST00000565778 FKBP5Q13451 457 aaPredicted RBP26.52■■□□□ 1.84
CLN3-219ENST00000565778 CWF19L2Q2TBE0 894 aaKnown RBP26.52■■□□□ 1.84
CLN3-219ENST00000565778 C6orf229H3BNL8 230 aa26.51■■□□□ 1.83
CLN3-219ENST00000565778 TAF1P21675 1872 aa26.51■■□□□ 1.83
CLN3-219ENST00000565778 NEURL1BA8MQ27 555 aa26.5■■□□□ 1.83
CLN3-219ENST00000565778 GPSM2P81274 684 aa26.5■■□□□ 1.83
CLN3-219ENST00000565778 CXCL9Q07325 125 aa26.5■■□□□ 1.83
CLN3-219ENST00000565778 WASHC4Q2M389 1173 aa26.5■■□□□ 1.83
CLN3-219ENST00000565778 KLRG1Q96E93 195 aa26.5■■□□□ 1.83
CLN3-219ENST00000565778 SCN4AP35499 1836 aa26.49■■□□□ 1.83
CLN3-219ENST00000565778 CDHR2Q9BYE9 1310 aa26.49■■□□□ 1.83
CLN3-219ENST00000565778 EPS15P42566 896 aa26.49■■□□□ 1.83
CLN3-219ENST00000565778 RIMBP2O15034 1052 aa26.48■■□□□ 1.83
CLN3-219ENST00000565778 DNAAF4Q8WXU2 420 aa26.48■■□□□ 1.83
CLN3-219ENST00000565778 RAD17O75943 681 aa26.47■■□□□ 1.83
CLN3-219ENST00000565778 SCNN1DP51172 638 aa26.47■■□□□ 1.83
CLN3-219ENST00000565778 TNIP1Q15025 636 aa26.47■■□□□ 1.83
CLN3-219ENST00000565778 CIAPIN1Q6FI81 312 aa26.47■■□□□ 1.83
CLN3-219ENST00000565778 POLLQ9UGP5 575 aa26.47■■□□□ 1.83
CLN3-219ENST00000565778 H7C1W4 665 aa26.46■■□□□ 1.83
CLN3-219ENST00000565778 ANKRD18AQ8IVF6 992 aa26.46■■□□□ 1.83
CLN3-219ENST00000565778 EYA3Q99504 573 aa26.46■■□□□ 1.83
CLN3-219ENST00000565778 ANKIB1Q9P2G1 1089 aa26.46■■□□□ 1.83
CLN3-219ENST00000565778 CTSWP56202 376 aa26.45■■□□□ 1.82
CLN3-219ENST00000565778 GCKRQ14397 625 aa26.45■■□□□ 1.82
CLN3-219ENST00000565778 UBE3BQ7Z3V4 1068 aa26.45■■□□□ 1.82
CLN3-219ENST00000565778 TTLL11Q8NHH1 800 aa26.45■■□□□ 1.82
CLN3-219ENST00000565778 CNTROBQ8N137 903 aa26.44■■□□□ 1.82
CLN3-219ENST00000565778 LINS1Q8NG48 757 aa26.44■■□□□ 1.82
CLN3-219ENST00000565778 TBC1D16Q8TBP0 767 aa26.44■■□□□ 1.82
CLN3-219ENST00000565778 BCL2L13Q9BXK5 485 aa26.44■■□□□ 1.82
CLN3-219ENST00000565778 ITGBL1O95965 494 aaPredicted RBP26.43■■□□□ 1.82
CLN3-219ENST00000565778 MAP1SQ66K74 1059 aaPredicted RBP26.43■■□□□ 1.82
CLN3-219ENST00000565778 CDC5LQ99459 802 aaKnown RBP26.43■■□□□ 1.82
CLN3-219ENST00000565778 ZC3H12CQ9C0D7 883 aaKnown RBP26.43■■□□□ 1.82
CLN3-219ENST00000565778 GPRC5DQ9NZD1 345 aa26.43■■□□□ 1.82
CLN3-219ENST00000565778 YDJCA8MPS7 323 aa26.42■■□□□ 1.82
CLN3-219ENST00000565778 G3V3G9 751 aa26.42■■□□□ 1.82
CLN3-219ENST00000565778 GMPSP49915 693 aaPredicted RBP26.42■■□□□ 1.82
CLN3-219ENST00000565778 DCAF8Q5TAQ9 597 aa26.42■■□□□ 1.82
CLN3-219ENST00000565778 USP50Q70EL3 339 aaPredicted RBP26.42■■□□□ 1.82
CLN3-219ENST00000565778 DBNDD1Q9H9R9 158 aa26.42■■□□□ 1.82
CLN3-219ENST00000565778 CREBZFQ9NS37 354 aa26.42■■□□□ 1.82
CLN3-219ENST00000565778 PODXL2Q9NZ53 605 aa26.42■■□□□ 1.82
CLN3-219ENST00000565778 ZNF521Q96K83 1311 aa26.41■■□□□ 1.82
CLN3-219ENST00000565778 F6X3S4 739 aa26.41■■□□□ 1.82
CLN3-219ENST00000565778 DOK7Q18PE1 504 aa26.41■■□□□ 1.82
CLN3-219ENST00000565778 GPR101Q96P66 508 aaPredicted RBP26.41■■□□□ 1.82
CLN3-219ENST00000565778 GREM2Q9H772 168 aa26.41■■□□□ 1.82
CLN3-219ENST00000565778 ADARB2Q9NS39 739 aaKnown RBP26.41■■□□□ 1.82
CLN3-219ENST00000565778 GGA1Q9UJY5 639 aa26.41■■□□□ 1.82
CLN3-219ENST00000565778 PASKQ96RG2 1323 aa26.4■■□□□ 1.82
CLN3-219ENST00000565778 UFL1O94874 794 aa26.4■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms