RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 JDP2Q8WYK2 163 aa22.03■■□□□ 1.12
CLN3-217ENST00000565354 THSD7BQ9C0I4 1608 aa22.02■■□□□ 1.12
CLN3-217ENST00000565354 GPTP24298 496 aa22.02■■□□□ 1.12
CLN3-217ENST00000565354 LTBP1Q14766 1721 aa22.02■■□□□ 1.12
CLN3-217ENST00000565354 TRPM7Q96QT4 1865 aa22.02■■□□□ 1.12
CLN3-217ENST00000565354 GTF2E1P29083 439 aaPredicted RBP22.01■■□□□ 1.11
CLN3-217ENST00000565354 CRY2Q49AN0 593 aa22■■□□□ 1.11
CLN3-217ENST00000565354 COL4A5P29400 1685 aa22■■□□□ 1.11
CLN3-217ENST00000565354 SLC34A2O95436 690 aa21.99■■□□□ 1.11
CLN3-217ENST00000565354 CT47B1P0C2W7 299 aaPredicted RBP21.99■■□□□ 1.11
CLN3-217ENST00000565354 LMOD1P29536 600 aaPredicted RBP21.99■■□□□ 1.11
CLN3-217ENST00000565354 EIF6P56537 245 aaKnown RBP21.99■■□□□ 1.11
CLN3-217ENST00000565354 FLIIQ13045 1269 aa21.99■■□□□ 1.11
CLN3-217ENST00000565354 FKBP5Q13451 457 aaPredicted RBP21.99■■□□□ 1.11
CLN3-217ENST00000565354 CC2D2BQ6DHV5 1058 aa21.99■■□□□ 1.11
CLN3-217ENST00000565354 ZNF428Q96B54 188 aa21.99■■□□□ 1.11
CLN3-217ENST00000565354 NYXQ9GZU5 481 aa21.99■■□□□ 1.11
CLN3-217ENST00000565354 GJA3Q9Y6H8 435 aa21.99■■□□□ 1.11
CLN3-217ENST00000565354 CACNA1FO60840 1977 aa21.99■■□□□ 1.11
CLN3-217ENST00000565354 ANKRD36CQ5JPF3 1778 aa21.98■■□□□ 1.11
CLN3-217ENST00000565354 TCIRG1Q13488 830 aa21.98■■□□□ 1.11
CLN3-217ENST00000565354 FAM161AQ3B820 660 aa21.98■■□□□ 1.11
CLN3-217ENST00000565354 PARP10Q53GL7 1025 aa21.98■■□□□ 1.11
CLN3-217ENST00000565354 G2E3Q7L622 706 aa21.98■■□□□ 1.11
CLN3-217ENST00000565354 PPP1R42Q7Z4L9 355 aa21.98■■□□□ 1.11
CLN3-217ENST00000565354 ZNF34Q8IZ26 560 aa21.98■■□□□ 1.11
CLN3-217ENST00000565354 ABCC12Q96J65 1359 aa21.98■■□□□ 1.11
CLN3-217ENST00000565354 CAPNS2Q96L46 248 aa21.97■■□□□ 1.11
CLN3-217ENST00000565354 YTHDC1Q96MU7 727 aaKnown RBP21.97■■□□□ 1.11
CLN3-217ENST00000565354 ECE1P42892 770 aa21.96■■□□□ 1.11
CLN3-217ENST00000565354 SCNN1DP51172 638 aa21.96■■□□□ 1.11
CLN3-217ENST00000565354 KSR2Q6VAB6 950 aa21.96■■□□□ 1.11
CLN3-217ENST00000565354 MYD88Q99836 296 aa21.96■■□□□ 1.11
CLN3-217ENST00000565354 MAP3K2Q9Y2U5 619 aa21.96■■□□□ 1.11
CLN3-217ENST00000565354 UBN2Q6ZU65 1347 aa21.96■■□□□ 1.11
CLN3-217ENST00000565354 PI4KAP2A4QPH2 592 aa21.95■■□□□ 1.1
CLN3-217ENST00000565354 EPS15P42566 896 aa21.95■■□□□ 1.1
CLN3-217ENST00000565354 FMR1Q06787 632 aaKnown RBP eCLIP21.95■■□□□ 1.1
CLN3-217ENST00000565354 NEXNQ0ZGT2 675 aa21.95■■□□□ 1.1
CLN3-217ENST00000565354 ALDH1L2Q3SY69 923 aa21.95■■□□□ 1.1
CLN3-217ENST00000565354 GRIPAP1Q4V328 841 aa21.95■■□□□ 1.1
CLN3-217ENST00000565354 NUTM1Q86Y26 1132 aa21.95■■□□□ 1.1
CLN3-217ENST00000565354 PI4KAP1Q8N8J0 262 aa21.95■■□□□ 1.1
CLN3-217ENST00000565354 BEGAINQ9BUH8 593 aa21.95■■□□□ 1.1
CLN3-217ENST00000565354 SMC4Q9NTJ3 1288 aa21.95■■□□□ 1.1
CLN3-217ENST00000565354 ATP5J2-PTCD1G3V325 749 aa21.94■■□□□ 1.1
CLN3-217ENST00000565354 HOXA10P31260 410 aaPredicted RBP21.94■■□□□ 1.1
CLN3-217ENST00000565354 SUSD4Q5VX71 490 aa21.94■■□□□ 1.1
CLN3-217ENST00000565354 PAXIP1Q6ZW49 1069 aaPredicted RBP21.94■■□□□ 1.1
CLN3-217ENST00000565354 LARGE2Q8N3Y3 721 aa21.94■■□□□ 1.1
CLN3-217ENST00000565354 RPGRQ92834 1020 aaKnown RBP21.94■■□□□ 1.1
CLN3-217ENST00000565354 GPR101Q96P66 508 aaPredicted RBP21.94■■□□□ 1.1
CLN3-217ENST00000565354 UTP14AQ9BVJ6 771 aaKnown RBP21.94■■□□□ 1.1
CLN3-217ENST00000565354 BCL2L13Q9BXK5 485 aa21.94■■□□□ 1.1
CLN3-217ENST00000565354 RIC1Q4ADV7 1423 aa21.94■■□□□ 1.1
CLN3-217ENST00000565354 CYP4F22Q6NT55 531 aa21.93■■□□□ 1.1
CLN3-217ENST00000565354 USP50Q70EL3 339 aaPredicted RBP21.93■■□□□ 1.1
CLN3-217ENST00000565354 SSH1Q8WYL5 1049 aa21.93■■□□□ 1.1
CLN3-217ENST00000565354 METTL22Q9BUU2 404 aaPredicted RBP21.93■■□□□ 1.1
CLN3-217ENST00000565354 IBTKQ9P2D0 1353 aaPredicted RBP21.93■■□□□ 1.1
CLN3-217ENST00000565354 GRM1Q13255 1194 aa21.92■■□□□ 1.1
CLN3-217ENST00000565354 CST9Q5W186 159 aa21.92■■□□□ 1.1
CLN3-217ENST00000565354 NLRP10Q86W26 655 aa21.92■■□□□ 1.1
CLN3-217ENST00000565354 MRPL50Q8N5N7 158 aaKnown RBP21.92■■□□□ 1.1
CLN3-217ENST00000565354 TRAF5O00463 557 aa21.91■■□□□ 1.1
CLN3-217ENST00000565354 DNAAF4Q8WXU2 420 aa21.91■■□□□ 1.1
CLN3-217ENST00000565354 ISCA1Q9BUE6 129 aa21.91■■□□□ 1.1
CLN3-217ENST00000565354 TRMT112Q9UI30 125 aaKnown RBP21.91■■□□□ 1.1
CLN3-217ENST00000565354 TLL2Q9Y6L7 1015 aa21.91■■□□□ 1.1
CLN3-217ENST00000565354 CCDC85CA6NKD9 419 aa21.9■■□□□ 1.1
CLN3-217ENST00000565354 NTSR2O95665 410 aa21.9■■□□□ 1.1
CLN3-217ENST00000565354 CRAMP1Q96RY5 1269 aa21.9■■□□□ 1.1
CLN3-217ENST00000565354 MLLT1Q03111 559 aaPredicted RBP21.89■■□□□ 1.09
CLN3-217ENST00000565354 NIM1KQ8IY84 436 aa21.89■■□□□ 1.09
CLN3-217ENST00000565354 RBM17Q96I25 401 aaKnown RBP21.89■■□□□ 1.09
CLN3-217ENST00000565354 PTPRCP08575 1304 aa21.88■■□□□ 1.09
CLN3-217ENST00000565354 PPEF1O14829 653 aaPredicted RBP21.88■■□□□ 1.09
CLN3-217ENST00000565354 MAP2K2P36507 400 aa21.88■■□□□ 1.09
CLN3-217ENST00000565354 RGS19P49795 217 aa21.88■■□□□ 1.09
CLN3-217ENST00000565354 SLC51AQ86UW1 340 aa21.88■■□□□ 1.09
CLN3-217ENST00000565354 CCDC191Q8NCU4 936 aa21.88■■□□□ 1.09
CLN3-217ENST00000565354 CWC25Q9NXE8 425 aaPredicted RBP21.88■■□□□ 1.09
CLN3-217ENST00000565354 SH3TC1Q8TE82 1336 aa21.87■■□□□ 1.09
CLN3-217ENST00000565354 CASP8AP2Q9UKL3 1982 aa21.87■■□□□ 1.09
CLN3-217ENST00000565354 F6X3S4 739 aa21.87■■□□□ 1.09
CLN3-217ENST00000565354 RARSP54136 660 aaKnown RBP21.87■■□□□ 1.09
CLN3-217ENST00000565354 TRIM28Q13263 835 aaKnown RBP21.87■■□□□ 1.09
CLN3-217ENST00000565354 GPRC5DQ9NZD1 345 aa21.87■■□□□ 1.09
CLN3-217ENST00000565354 PPIP5K2O43314 1243 aa21.86■■□□□ 1.09
CLN3-217ENST00000565354 AOC2O75106 756 aa21.86■■□□□ 1.09
CLN3-217ENST00000565354 SLC4A10Q6U841 1118 aa21.86■■□□□ 1.09
CLN3-217ENST00000565354 ADARB2Q9NS39 739 aaKnown RBP21.86■■□□□ 1.09
CLN3-217ENST00000565354 TSKSQ9UJT2 592 aa21.86■■□□□ 1.09
CLN3-217ENST00000565354 RTL5Q5HYW3 569 aaPredicted RBP21.85■■□□□ 1.09
CLN3-217ENST00000565354 SAPCD2Q86UD0 394 aa21.85■■□□□ 1.09
CLN3-217ENST00000565354 VPS33BQ9H267 617 aa21.85■■□□□ 1.09
CLN3-217ENST00000565354 KIF16BQ96L93 1317 aa21.84■■□□□ 1.09
CLN3-217ENST00000565354 CA12O43570 354 aa21.84■■□□□ 1.09
CLN3-217ENST00000565354 AOC3Q16853 763 aa21.84■■□□□ 1.09
CLN3-217ENST00000565354 CWF19L2Q2TBE0 894 aaKnown RBP21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms