RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ZNF428Q96B54 188 aa17.09■□□□□ 0.33
CLK3-216ENST00000564468 TAF1P21675 1872 aa17.09■□□□□ 0.33
CLK3-216ENST00000564468 ABCC4O15439 1325 aa17.08■□□□□ 0.32
CLK3-216ENST00000564468 CAPN15O75808 1086 aa17.08■□□□□ 0.32
CLK3-216ENST00000564468 VEGFAP15692 232 aaPredicted RBP17.08■□□□□ 0.32
CLK3-216ENST00000564468 SF3B3Q15393 1217 aaKnown RBP17.08■□□□□ 0.32
CLK3-216ENST00000564468 RTL5Q5HYW3 569 aaPredicted RBP17.08■□□□□ 0.32
CLK3-216ENST00000564468 TMC4Q7Z404 712 aa17.08■□□□□ 0.32
CLK3-216ENST00000564468 DNAAF4Q8WXU2 420 aa17.08■□□□□ 0.32
CLK3-216ENST00000564468 WDR90Q96KV7 1748 aa17.07■□□□□ 0.32
CLK3-216ENST00000564468 PRELPP51888 382 aa17.07■□□□□ 0.32
CLK3-216ENST00000564468 GRAPQ13588 217 aa17.07■□□□□ 0.32
CLK3-216ENST00000564468 DPY19L2Q6NUT2 758 aa17.07■□□□□ 0.32
CLK3-216ENST00000564468 GRAPLQ8TC17 118 aaPredicted RBP17.07■□□□□ 0.32
CLK3-216ENST00000564468 PSMD1Q99460 953 aa17.07■□□□□ 0.32
CLK3-216ENST00000564468 PDE8AO60658 829 aa17.06■□□□□ 0.32
CLK3-216ENST00000564468 IGKV5-2P06315 115 aa17.06■□□□□ 0.32
CLK3-216ENST00000564468 ATP6V0A2Q9Y487 856 aa17.06■□□□□ 0.32
CLK3-216ENST00000564468 CDHR2Q9BYE9 1310 aa17.05■□□□□ 0.32
CLK3-216ENST00000564468 NEURL1BA8MQ27 555 aa17.05■□□□□ 0.32
CLK3-216ENST00000564468 SP8Q8IXZ3 490 aa17.05■□□□□ 0.32
CLK3-216ENST00000564468 LINS1Q8NG48 757 aa17.05■□□□□ 0.32
CLK3-216ENST00000564468 GLTPD2A6NH11 291 aa17.04■□□□□ 0.32
CLK3-216ENST00000564468 CT47B1P0C2W7 299 aaPredicted RBP17.04■□□□□ 0.32
CLK3-216ENST00000564468 CWF19L2Q2TBE0 894 aaKnown RBP17.04■□□□□ 0.32
CLK3-216ENST00000564468 CCDC152Q4G0S7 254 aa17.04■□□□□ 0.32
CLK3-216ENST00000564468 OLFM4Q6UX06 510 aa17.04■□□□□ 0.32
CLK3-216ENST00000564468 TRMT2AQ8IZ69 625 aaKnown RBP17.04■□□□□ 0.32
CLK3-216ENST00000564468 IARSP41252 1262 aaKnown RBP17.03■□□□□ 0.32
CLK3-216ENST00000564468 SUPT20HQ8NEM7 779 aa17.03■□□□□ 0.32
CLK3-216ENST00000564468 CDCA7LQ96GN5 454 aa17.03■□□□□ 0.32
CLK3-216ENST00000564468 VPS33BQ9H267 617 aa17.03■□□□□ 0.32
CLK3-216ENST00000564468 ZNF277Q9NRM2 450 aaPredicted RBP17.03■□□□□ 0.32
CLK3-216ENST00000564468 H7C1W4 665 aa17.02■□□□□ 0.32
CLK3-216ENST00000564468 GCKRQ14397 625 aa17.02■□□□□ 0.32
CLK3-216ENST00000564468 ALDH1L2Q3SY69 923 aa17.02■□□□□ 0.32
CLK3-216ENST00000564468 JDP2Q8WYK2 163 aa17.02■□□□□ 0.32
CLK3-216ENST00000564468 SNED1Q8TER0 1413 aa17.02■□□□□ 0.31
CLK3-216ENST00000564468 MPNDQ8N594 471 aa17.01■□□□□ 0.31
CLK3-216ENST00000564468 LRRC37AA6NMS7 1700 aa17.01■□□□□ 0.31
CLK3-216ENST00000564468 PTPRCP08575 1304 aa17■□□□□ 0.31
CLK3-216ENST00000564468 RPS8P62241 208 aaKnown RBP17■□□□□ 0.31
CLK3-216ENST00000564468 DPP8Q6V1X1 898 aaPredicted RBP17■□□□□ 0.31
CLK3-216ENST00000564468 UBE3BQ7Z3V4 1068 aa17■□□□□ 0.31
CLK3-216ENST00000564468 MRPL50Q8N5N7 158 aaKnown RBP17■□□□□ 0.31
CLK3-216ENST00000564468 JARID2Q92833 1246 aaPredicted RBP17■□□□□ 0.31
CLK3-216ENST00000564468 F6X3S4 739 aa16.99■□□□□ 0.31
CLK3-216ENST00000564468 HSPA1AP0DMV8 641 aaKnown RBP16.99■□□□□ 0.31
CLK3-216ENST00000564468 HSPA1BP0DMV9 641 aaKnown RBP16.99■□□□□ 0.31
CLK3-216ENST00000564468 CTSWP56202 376 aa16.99■□□□□ 0.31
CLK3-216ENST00000564468 HNRNPUQ00839 825 aaKnown RBP eCLIP16.99■□□□□ 0.31
CLK3-216ENST00000564468 BEND3Q5T5X7 828 aa16.99■□□□□ 0.31
CLK3-216ENST00000564468 LARGE2Q8N3Y3 721 aa16.99■□□□□ 0.31
CLK3-216ENST00000564468 CELF1Q92879 486 aaKnown RBP16.99■□□□□ 0.31
CLK3-216ENST00000564468 RTFDC1Q9BY42 306 aaPredicted RBP16.99■□□□□ 0.31
CLK3-216ENST00000564468 SCN4AP35499 1836 aa16.98■□□□□ 0.31
CLK3-216ENST00000564468 ALDH1L1O75891 902 aa16.98■□□□□ 0.31
CLK3-216ENST00000564468 SSH1Q8WYL5 1049 aa16.98■□□□□ 0.31
CLK3-216ENST00000564468 CDC5LQ99459 802 aaKnown RBP16.98■□□□□ 0.31
CLK3-216ENST00000564468 PLA2G12BQ9BX93 195 aa16.98■□□□□ 0.31
CLK3-216ENST00000564468 PPIP5K2O43314 1243 aa16.97■□□□□ 0.31
CLK3-216ENST00000564468 EIF6P56537 245 aaKnown RBP16.97■□□□□ 0.31
CLK3-216ENST00000564468 SLC4A10Q6U841 1118 aa16.97■□□□□ 0.31
CLK3-216ENST00000564468 ANKRD18AQ8IVF6 992 aa16.97■□□□□ 0.31
CLK3-216ENST00000564468 TTLL11Q8NHH1 800 aa16.97■□□□□ 0.31
CLK3-216ENST00000564468 SRCIN1Q9C0H9 1055 aa16.97■□□□□ 0.31
CLK3-216ENST00000564468 SMC4Q9NTJ3 1288 aa16.97■□□□□ 0.31
CLK3-216ENST00000564468 SPEF2Q9C093 1822 aa16.96■□□□□ 0.31
CLK3-216ENST00000564468 FZD9O00144 591 aa16.96■□□□□ 0.31
CLK3-216ENST00000564468 NIM1KQ8IY84 436 aa16.96■□□□□ 0.31
CLK3-216ENST00000564468 SEC31BQ9NQW1 1179 aa16.96■□□□□ 0.31
CLK3-216ENST00000564468 C9orf78Q9NZ63 289 aaPredicted RBP16.96■□□□□ 0.31
CLK3-216ENST00000564468 RTL9Q8NET4 1388 aa16.96■□□□□ 0.31
CLK3-216ENST00000564468 GRM8O00222 908 aa16.95■□□□□ 0.3
CLK3-216ENST00000564468 CCDC85AQ96PX6 553 aaPredicted RBP16.95■□□□□ 0.3
CLK3-216ENST00000564468 NSFL1CQ9UNZ2 370 aaKnown RBP16.95■□□□□ 0.3
CLK3-216ENST00000564468 IQCA1LA6NCM1 817 aa16.94■□□□□ 0.3
CLK3-216ENST00000564468 DDNO94850 711 aaPredicted RBP16.94■□□□□ 0.3
CLK3-216ENST00000564468 CASP7P55210 303 aa16.94■□□□□ 0.3
CLK3-216ENST00000564468 EYA3Q99504 573 aa16.94■□□□□ 0.3
CLK3-216ENST00000564468 BCL2L13Q9BXK5 485 aa16.94■□□□□ 0.3
CLK3-216ENST00000564468 CSF1RP07333 972 aa16.93■□□□□ 0.3
CLK3-216ENST00000564468 IGHMBP2P38935 993 aaKnown RBP16.93■□□□□ 0.3
CLK3-216ENST00000564468 BRPF1P55201 1214 aaPredicted RBP16.93■□□□□ 0.3
CLK3-216ENST00000564468 KIAA2012Q0VF49 1180 aa16.93■□□□□ 0.3
CLK3-216ENST00000564468 AOC3Q16853 763 aa16.93■□□□□ 0.3
CLK3-216ENST00000564468 GPC2Q8N158 579 aa16.93■□□□□ 0.3
CLK3-216ENST00000564468 L3MBTL3Q96JM7 780 aaPredicted RBP16.93■□□□□ 0.3
CLK3-216ENST00000564468 GREM2Q9H772 168 aa16.93■□□□□ 0.3
CLK3-216ENST00000564468 CREBZFQ9NS37 354 aa16.93■□□□□ 0.3
CLK3-216ENST00000564468 PODXL2Q9NZ53 605 aa16.93■□□□□ 0.3
CLK3-216ENST00000564468 C6orf229H3BNL8 230 aa16.92■□□□□ 0.3
CLK3-216ENST00000564468 WASHC4Q2M389 1173 aa16.92■□□□□ 0.3
CLK3-216ENST00000564468 BSDC1Q9NW68 430 aaPredicted RBP16.92■□□□□ 0.3
CLK3-216ENST00000564468 ANKIB1Q9P2G1 1089 aa16.92■□□□□ 0.3
CLK3-216ENST00000564468 ZNF541Q9H0D2 1346 aa16.92■□□□□ 0.3
CLK3-216ENST00000564468 LTBP1Q14766 1721 aa16.91■□□□□ 0.3
CLK3-216ENST00000564468 ITGA6P23229 1130 aa16.91■□□□□ 0.3
CLK3-216ENST00000564468 GPSM2P81274 684 aa16.91■□□□□ 0.3
CLK3-216ENST00000564468 CHADLQ6NUI6 762 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms