RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	CCDC66	A2RUB6	948 aa		13.22	□□□□□ -0.29
TCF4-222	ENST00000564228	PTF1A	Q7RTS3	328 aa		13.22	□□□□□ -0.29
TCF4-222	ENST00000564228	TTC12	Q9H892	705 aa	Predicted RBP	13.22	□□□□□ -0.29
TCF4-222	ENST00000564228	CCDC183	Q5T5S1	534 aa		13.21	□□□□□ -0.29
TCF4-222	ENST00000564228	KRT27	Q7Z3Y8	459 aa		13.21	□□□□□ -0.29
TCF4-222	ENST00000564228	USP25	Q9UHP3	1055 aa		13.21	□□□□□ -0.29
TCF4-222	ENST00000564228	TUBGCP6	Q96RT7	1819 aa		13.21	□□□□□ -0.29
TCF4-222	ENST00000564228	PALLD	Q8WX93	1383 aa		13.21	□□□□□ -0.29
TCF4-222	ENST00000564228	A1BG	P04217	495 aa		13.21	□□□□□ -0.3
TCF4-222	ENST00000564228	RXRB	P28702	533 aa		13.21	□□□□□ -0.3
TCF4-222	ENST00000564228	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.21	□□□□□ -0.3
TCF4-222	ENST00000564228	CREBRF	Q8IUR6	639 aa		13.21	□□□□□ -0.3
TCF4-222	ENST00000564228	SLC4A9	Q96Q91	983 aa		13.21	□□□□□ -0.3
TCF4-222	ENST00000564228	CGN	Q9P2M7	1197 aa	Known RBP	13.21	□□□□□ -0.3
TCF4-222	ENST00000564228	RGS17	Q9UGC6	210 aa	Predicted RBP	13.21	□□□□□ -0.3
TCF4-222	ENST00000564228	PI4KAP2	A4QPH2	592 aa		13.2	□□□□□ -0.3
TCF4-222	ENST00000564228	KDM4A	O75164	1064 aa		13.2	□□□□□ -0.3
TCF4-222	ENST00000564228	PI4KAP1	Q8N8J0	262 aa		13.2	□□□□□ -0.3
TCF4-222	ENST00000564228	ZNF830	Q96NB3	372 aa	Predicted RBP	13.2	□□□□□ -0.3
TCF4-222	ENST00000564228	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.2	□□□□□ -0.3
TCF4-222	ENST00000564228	DCTPP1	Q9H773	170 aa		13.2	□□□□□ -0.3
TCF4-222	ENST00000564228	GOLGA6L6	A8MZA4	724 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	NBPF26	B4DH59	902 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	PDIA4	P13667	645 aa	Known RBP	13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	NBPF14	Q5TI25	921 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	NBPF10	Q6P3W6	841 aa	Known RBP	13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	COPS6	Q7L5N1	327 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	NBPF15	Q8N660	670 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	XAGE3	Q8WTP9	111 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	SMARCC1	Q92922	1105 aa	Predicted RBP	13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	TMX3	Q96JJ7	454 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	CTNNA3	Q9UI47	895 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	DDX41	Q9UJV9	622 aa	Known RBP	13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	ARFGEF2	Q9Y6D5	1785 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	ADCY9	O60503	1353 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	TCHH	Q07283	1943 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	LOC102724428	A0A0B4J2F2	783 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	STARD3NL	O95772	234 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	ATP6V1A	P38606	617 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	SIK1	P57059	783 aa		13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	NCBP1	Q09161	790 aa	Known RBP	13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.19	□□□□□ -0.3
TCF4-222	ENST00000564228	AFDN	P55196	1824 aa	Known RBP	13.18	□□□□□ -0.3
TCF4-222	ENST00000564228	MYH14	Q7Z406	1995 aa	Known RBP	13.18	□□□□□ -0.3
TCF4-222	ENST00000564228	ERC2	O15083	957 aa		13.18	□□□□□ -0.3
TCF4-222	ENST00000564228	DDX58	O95786	925 aa	Known RBP	13.18	□□□□□ -0.3
TCF4-222	ENST00000564228	SLFN14	P0C7P3	912 aa		13.18	□□□□□ -0.3
TCF4-222	ENST00000564228	CDK11B	P21127	795 aa	Known RBP	13.18	□□□□□ -0.3
TCF4-222	ENST00000564228	CCT4	P50991	539 aa	Known RBP	13.18	□□□□□ -0.3
TCF4-222	ENST00000564228	POTEA	Q6S8J7	498 aa		13.18	□□□□□ -0.3
TCF4-222	ENST00000564228	C17orf53	Q8N3J3	647 aa	Predicted RBP	13.18	□□□□□ -0.3
TCF4-222	ENST00000564228	DNAAF4	Q8WXU2	420 aa		13.18	□□□□□ -0.3
TCF4-222	ENST00000564228	MAP3K2	Q9Y2U5	619 aa		13.18	□□□□□ -0.3
TCF4-222	ENST00000564228	PXDNL	A1KZ92	1463 aa		13.18	□□□□□ -0.3
TCF4-222	ENST00000564228	FAM177B	A6PVY3	158 aa		13.17	□□□□□ -0.3
TCF4-222	ENST00000564228	SMTNL1	A8MU46	457 aa		13.17	□□□□□ -0.3
TCF4-222	ENST00000564228	MX1	P20591	662 aa		13.17	□□□□□ -0.3
TCF4-222	ENST00000564228	COL5A3	P25940	1745 aa	Predicted RBP	13.17	□□□□□ -0.3
TCF4-222	ENST00000564228	KSR2	Q6VAB6	950 aa		13.17	□□□□□ -0.3
TCF4-222	ENST00000564228	LRP10	Q7Z4F1	713 aa		13.17	□□□□□ -0.3
TCF4-222	ENST00000564228	IL17RA	Q96F46	866 aa		13.17	□□□□□ -0.3
TCF4-222	ENST00000564228	WDR33	Q9C0J8	1336 aa	Known RBP	13.17	□□□□□ -0.3
TCF4-222	ENST00000564228	C1orf115	Q9H7X2	142 aa		13.17	□□□□□ -0.3
TCF4-222	ENST00000564228	CYP19A1	P11511	503 aa	Predicted RBP	13.17	□□□□□ -0.3
TCF4-222	ENST00000564228	FAM196A	Q6ZSG2	479 aa		13.17	□□□□□ -0.3
TCF4-222	ENST00000564228	RIC3	Q7Z5B4	369 aa		13.17	□□□□□ -0.3
TCF4-222	ENST00000564228	LY75	O60449	1722 aa		13.16	□□□□□ -0.3
TCF4-222	ENST00000564228	CIC	Q96RK0	1608 aa	Predicted RBP	13.16	□□□□□ -0.3
TCF4-222	ENST00000564228	SDS	P20132	328 aa		13.16	□□□□□ -0.3
TCF4-222	ENST00000564228	KCNQ4	P56696	695 aa		13.16	□□□□□ -0.3
TCF4-222	ENST00000564228	ANAPC15	P60006	121 aa		13.16	□□□□□ -0.3
TCF4-222	ENST00000564228	CHAMP1	Q96JM3	812 aa		13.16	□□□□□ -0.3
TCF4-222	ENST00000564228	KCNF1	Q9H3M0	494 aa		13.16	□□□□□ -0.3
TCF4-222	ENST00000564228	NUP188	Q5SRE5	1749 aa		13.16	□□□□□ -0.3
TCF4-222	ENST00000564228	ZNF831	Q5JPB2	1677 aa		13.16	□□□□□ -0.3
TCF4-222	ENST00000564228	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.16	□□□□□ -0.3
TCF4-222	ENST00000564228	TAF1L	Q8IZX4	1826 aa		13.16	□□□□□ -0.3
TCF4-222	ENST00000564228	ANKRD13D	Q6ZTN6	518 aa		13.15	□□□□□ -0.3
TCF4-222	ENST00000564228	USP48	Q86UV5	1035 aa		13.15	□□□□□ -0.3
TCF4-222	ENST00000564228	DNAJC2	Q99543	621 aa	Known RBP	13.15	□□□□□ -0.3
TCF4-222	ENST00000564228	MEIS3	Q99687	375 aa		13.15	□□□□□ -0.3
TCF4-222	ENST00000564228	SRCIN1	Q9C0H9	1055 aa		13.15	□□□□□ -0.3
TCF4-222	ENST00000564228	TRIM37	O94972	964 aa		13.15	□□□□□ -0.3
TCF4-222	ENST00000564228	ITPK1	Q13572	414 aa		13.15	□□□□□ -0.3
TCF4-222	ENST00000564228	FUCA2	Q9BTY2	467 aa		13.15	□□□□□ -0.3
TCF4-222	ENST00000564228	PYCARD	Q9ULZ3	195 aa		13.15	□□□□□ -0.3
TCF4-222	ENST00000564228	ZBTB1	Q9Y2K1	713 aa		13.15	□□□□□ -0.3
TCF4-222	ENST00000564228	ATP10D	Q9P241	1426 aa		13.14	□□□□□ -0.31
TCF4-222	ENST00000564228	GADD45B	O75293	160 aa	Predicted RBP	13.14	□□□□□ -0.31
TCF4-222	ENST00000564228	HCLS1	P14317	486 aa	Predicted RBP	13.14	□□□□□ -0.31
TCF4-222	ENST00000564228	IRX5	P78411	483 aa	Predicted RBP	13.14	□□□□□ -0.31
TCF4-222	ENST00000564228	TERF2	Q15554	542 aa		13.14	□□□□□ -0.31
TCF4-222	ENST00000564228	BEND3	Q5T5X7	828 aa		13.14	□□□□□ -0.31
TCF4-222	ENST00000564228	TTLL7	Q6ZT98	887 aa		13.14	□□□□□ -0.31
TCF4-222	ENST00000564228	TIGD1	Q96MW7	591 aa		13.14	□□□□□ -0.31
TCF4-222	ENST00000564228	TSPYL1	Q9H0U9	437 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms