RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 SUCLG2Q96I99 432 aa17.01■□□□□ 0.31
SMPD3-205ENST00000563455 PLA2G12BQ9BX93 195 aa17.01■□□□□ 0.31
SMPD3-205ENST00000563455 BICC1Q9H694 974 aaKnown RBP17.01■□□□□ 0.31
SMPD3-205ENST00000563455 EIF5P55010 431 aaKnown RBP17■□□□□ 0.31
SMPD3-205ENST00000563455 CASP7P55210 303 aa17■□□□□ 0.31
SMPD3-205ENST00000563455 CLEC4GQ6UXB4 293 aa17■□□□□ 0.31
SMPD3-205ENST00000563455 C10orf71Q711Q0 1435 aa17■□□□□ 0.31
SMPD3-205ENST00000563455 UBE3BQ7Z3V4 1068 aa17■□□□□ 0.31
SMPD3-205ENST00000563455 TICAM2Q86XR7 235 aa17■□□□□ 0.31
SMPD3-205ENST00000563455 ZNF526Q8TF50 670 aaPredicted RBP17■□□□□ 0.31
SMPD3-205ENST00000563455 SRP68Q9UHB9 627 aaKnown RBP17■□□□□ 0.31
SMPD3-205ENST00000563455 NARFQ9UHQ1 456 aa17■□□□□ 0.31
SMPD3-205ENST00000563455 ZNF652Q9Y2D9 606 aa17■□□□□ 0.31
SMPD3-205ENST00000563455 CDHR2Q9BYE9 1310 aa16.99■□□□□ 0.31
SMPD3-205ENST00000563455 EPB41L2O43491 1005 aaKnown RBP16.99■□□□□ 0.31
SMPD3-205ENST00000563455 TM4SF1P30408 202 aa16.99■□□□□ 0.31
SMPD3-205ENST00000563455 PARP10Q53GL7 1025 aa16.99■□□□□ 0.31
SMPD3-205ENST00000563455 ZBTB38Q8NAP3 1195 aaPredicted RBP16.99■□□□□ 0.31
SMPD3-205ENST00000563455 USPL1Q5W0Q7 1092 aa16.98■□□□□ 0.31
SMPD3-205ENST00000563455 DZIP3Q86Y13 1208 aaKnown RBP16.98■□□□□ 0.31
SMPD3-205ENST00000563455 KAZALD1Q96I82 304 aa16.98■□□□□ 0.31
SMPD3-205ENST00000563455 ZBTB3Q9H5J0 574 aa16.98■□□□□ 0.31
SMPD3-205ENST00000563455 SALL3Q9BXA9 1300 aa16.97■□□□□ 0.31
SMPD3-205ENST00000563455 ARFGEF2Q9Y6D5 1785 aa16.97■□□□□ 0.31
SMPD3-205ENST00000563455 ATP5J2-PTCD1G3V325 749 aa16.97■□□□□ 0.31
SMPD3-205ENST00000563455 DAXXQ9UER7 740 aaPredicted RBP16.97■□□□□ 0.31
SMPD3-205ENST00000563455 POLRMTO00411 1230 aaKnown RBP16.96■□□□□ 0.31
SMPD3-205ENST00000563455 GLRX3O76003 335 aaKnown RBP16.96■□□□□ 0.31
SMPD3-205ENST00000563455 PIP4K2AP48426 406 aaPredicted RBP16.96■□□□□ 0.31
SMPD3-205ENST00000563455 GPR108Q9NPR9 543 aa16.96■□□□□ 0.31
SMPD3-205ENST00000563455 ZBTB1Q9Y2K1 713 aa16.96■□□□□ 0.31
SMPD3-205ENST00000563455 APBB1O00213 710 aa16.95■□□□□ 0.3
SMPD3-205ENST00000563455 CIAO1O76071 339 aa16.95■□□□□ 0.3
SMPD3-205ENST00000563455 REC8O95072 547 aa16.95■□□□□ 0.3
SMPD3-205ENST00000563455 IFIT2P09913 472 aaKnown RBP16.95■□□□□ 0.3
SMPD3-205ENST00000563455 HSPA6P17066 643 aa16.95■□□□□ 0.3
SMPD3-205ENST00000563455 KCNA3P22001 575 aa16.95■□□□□ 0.3
SMPD3-205ENST00000563455 DDR1Q08345 913 aa16.95■□□□□ 0.3
SMPD3-205ENST00000563455 BECN1Q14457 450 aa16.95■□□□□ 0.3
SMPD3-205ENST00000563455 TBC1D32Q96NH3 1257 aa16.95■□□□□ 0.3
SMPD3-205ENST00000563455 SMARCA5O60264 1052 aaPredicted RBP16.94■□□□□ 0.3
SMPD3-205ENST00000563455 TOMM70O94826 608 aa16.94■□□□□ 0.3
SMPD3-205ENST00000563455 IL15P40933 162 aaPredicted RBP16.94■□□□□ 0.3
SMPD3-205ENST00000563455 NLRP10Q86W26 655 aa16.94■□□□□ 0.3
SMPD3-205ENST00000563455 C16orf71Q8IYS4 520 aaPredicted RBP16.94■□□□□ 0.3
SMPD3-205ENST00000563455 ZNF34Q8IZ26 560 aa16.94■□□□□ 0.3
SMPD3-205ENST00000563455 ZNF330Q9Y3S2 320 aaPredicted RBP16.94■□□□□ 0.3
SMPD3-205ENST00000563455 C4AP0C0L4 1744 aa16.93■□□□□ 0.3
SMPD3-205ENST00000563455 GOLGB1Q14789 3259 aaKnown RBP16.93■□□□□ 0.3
SMPD3-205ENST00000563455 SERPINB2P05120 415 aa16.93■□□□□ 0.3
SMPD3-205ENST00000563455 FOXO4P98177 505 aa16.93■□□□□ 0.3
SMPD3-205ENST00000563455 NFIXQ14938 502 aa16.93■□□□□ 0.3
SMPD3-205ENST00000563455 LMBR1LQ6UX01 489 aa16.93■□□□□ 0.3
SMPD3-205ENST00000563455 ECHDC1Q9NTX5 307 aa16.93■□□□□ 0.3
SMPD3-205ENST00000563455 COL5A3P25940 1745 aaPredicted RBP16.93■□□□□ 0.3
SMPD3-205ENST00000563455 H0YIN7 160 aa16.92■□□□□ 0.3
SMPD3-205ENST00000563455 CSF1RP07333 972 aa16.92■□□□□ 0.3
SMPD3-205ENST00000563455 GSPT1P15170 499 aaKnown RBP16.92■□□□□ 0.3
SMPD3-205ENST00000563455 SDSP20132 328 aa16.92■□□□□ 0.3
SMPD3-205ENST00000563455 RBM25P49756 843 aaKnown RBP16.92■□□□□ 0.3
SMPD3-205ENST00000563455 PTPN12Q05209 780 aaKnown RBP16.92■□□□□ 0.3
SMPD3-205ENST00000563455 CCDC57Q2TAC2 916 aa16.92■□□□□ 0.3
SMPD3-205ENST00000563455 C9orf131Q5VYM1 1079 aa16.92■□□□□ 0.3
SMPD3-205ENST00000563455 TBC1D9Q6ZT07 1266 aa16.92■□□□□ 0.3
SMPD3-205ENST00000563455 CNTROBQ8N137 903 aa16.92■□□□□ 0.3
SMPD3-205ENST00000563455 C22orf23Q9BZE7 217 aa16.92■□□□□ 0.3
SMPD3-205ENST00000563455 TJP1Q07157 1748 aa16.92■□□□□ 0.3
SMPD3-205ENST00000563455 HIP1O00291 1037 aa16.91■□□□□ 0.3
SMPD3-205ENST00000563455 KIF3CO14782 793 aa16.91■□□□□ 0.3
SMPD3-205ENST00000563455 RFX5P48382 616 aaPredicted RBP16.91■□□□□ 0.3
SMPD3-205ENST00000563455 PDE8AO60658 829 aa16.9■□□□□ 0.3
SMPD3-205ENST00000563455 CHRNA5P30532 468 aa16.9■□□□□ 0.3
SMPD3-205ENST00000563455 TTLL6Q8N841 843 aa16.9■□□□□ 0.3
SMPD3-205ENST00000563455 IL1RAPL2Q9NP60 686 aa16.9■□□□□ 0.3
SMPD3-205ENST00000563455 TRMT112Q9UI30 125 aaKnown RBP16.9■□□□□ 0.3
SMPD3-205ENST00000563455 AKAP2Q9Y2D5 859 aa16.9■□□□□ 0.3
SMPD3-205ENST00000563455 PDE6BP35913 854 aa16.89■□□□□ 0.29
SMPD3-205ENST00000563455 IFIT5Q13325 482 aaKnown RBP16.89■□□□□ 0.29
SMPD3-205ENST00000563455 EPHA10Q5JZY3 1008 aa16.89■□□□□ 0.29
SMPD3-205ENST00000563455 UTP14AQ9BVJ6 771 aaKnown RBP16.89■□□□□ 0.29
SMPD3-205ENST00000563455 KIF13BQ9NQT8 1826 aa16.89■□□□□ 0.29
SMPD3-205ENST00000563455 EYA2O00167 538 aa16.88■□□□□ 0.29
SMPD3-205ENST00000563455 NPHP1O15259 732 aa16.88■□□□□ 0.29
SMPD3-205ENST00000563455 SASH1O94885 1247 aa16.88■□□□□ 0.29
SMPD3-205ENST00000563455 CAMTA2O94983 1202 aa16.88■□□□□ 0.29
SMPD3-205ENST00000563455 APLP1P51693 650 aa16.88■□□□□ 0.29
SMPD3-205ENST00000563455 MFAP1P55081 439 aaKnown RBP16.88■□□□□ 0.29
SMPD3-205ENST00000563455 AACSQ86V21 672 aa16.88■□□□□ 0.29
SMPD3-205ENST00000563455 C2CD5Q86YS7 1000 aa16.88■□□□□ 0.29
SMPD3-205ENST00000563455 OTUD7AQ8TE49 926 aaPredicted RBP16.88■□□□□ 0.29
SMPD3-205ENST00000563455 RUFY2Q8WXA3 655 aa16.88■□□□□ 0.29
SMPD3-205ENST00000563455 RNF181Q9P0P0 153 aa16.88■□□□□ 0.29
SMPD3-205ENST00000563455 AFDNP55196 1824 aaKnown RBP16.88■□□□□ 0.29
SMPD3-205ENST00000563455 SH3TC1Q8TE82 1336 aa16.88■□□□□ 0.29
SMPD3-205ENST00000563455 ZC3H4Q9UPT8 1303 aaKnown RBP16.88■□□□□ 0.29
SMPD3-205ENST00000563455 MYH14Q7Z406 1995 aaKnown RBP16.88■□□□□ 0.29
SMPD3-205ENST00000563455 SEC24BO95487 1268 aa16.87■□□□□ 0.29
SMPD3-205ENST00000563455 HLFQ16534 295 aa16.87■□□□□ 0.29
SMPD3-205ENST00000563455 BICDL1Q6ZP65 573 aa16.87■□□□□ 0.29
SMPD3-205ENST00000563455 PI4K2BQ8TCG2 481 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms