RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 KLHDC4Q8TBB5 520 aa16.81■□□□□ 0.28
VPS39-206ENST00000562662 LRRCC1Q9C099 1032 aa16.81■□□□□ 0.28
VPS39-206ENST00000562662 NYXQ9GZU5 481 aa16.81■□□□□ 0.28
VPS39-206ENST00000562662 STK32BQ9NY57 414 aa16.81■□□□□ 0.28
VPS39-206ENST00000562662 CHMP3Q9Y3E7 222 aa16.81■□□□□ 0.28
VPS39-206ENST00000562662 TM4SF1P30408 202 aa16.8■□□□□ 0.28
VPS39-206ENST00000562662 SLC10A5Q5PT55 438 aa16.8■□□□□ 0.28
VPS39-206ENST00000562662 NBPF5PQ86XG9 351 aaPredicted RBP16.8■□□□□ 0.28
VPS39-206ENST00000562662 RHPN1Q8TCX5 695 aa16.8■□□□□ 0.28
VPS39-206ENST00000562662 TAF1P21675 1872 aa16.8■□□□□ 0.28
VPS39-206ENST00000562662 HSP90B1P14625 803 aaKnown RBP16.79■□□□□ 0.28
VPS39-206ENST00000562662 KIF1BPQ96EK5 621 aa16.79■□□□□ 0.28
VPS39-206ENST00000562662 GREM2Q9H772 168 aa16.79■□□□□ 0.28
VPS39-206ENST00000562662 RIC1Q4ADV7 1423 aa16.79■□□□□ 0.28
VPS39-206ENST00000562662 RTL9Q8NET4 1388 aa16.78■□□□□ 0.28
VPS39-206ENST00000562662 ANKRD31Q8N7Z5 1873 aa16.78■□□□□ 0.28
VPS39-206ENST00000562662 SASH1O94885 1247 aa16.78■□□□□ 0.28
VPS39-206ENST00000562662 G3BP1Q13283 466 aaKnown RBP eCLIP16.78■□□□□ 0.28
VPS39-206ENST00000562662 OS9Q13438 667 aaPredicted RBP16.78■□□□□ 0.28
VPS39-206ENST00000562662 ERC1Q8IUD2 1116 aa16.78■□□□□ 0.28
VPS39-206ENST00000562662 ZNF594Q96JF6 807 aaPredicted RBP16.78■□□□□ 0.28
VPS39-206ENST00000562662 CCDC85AQ96PX6 553 aaPredicted RBP16.78■□□□□ 0.28
VPS39-206ENST00000562662 SIL1Q9H173 461 aa16.78■□□□□ 0.28
VPS39-206ENST00000562662 ZBTB47Q9UFB7 747 aaPredicted RBP16.78■□□□□ 0.28
VPS39-206ENST00000562662 A0A1B0GUL6 1792 aa16.78■□□□□ 0.28
VPS39-206ENST00000562662 COL4A1P02462 1669 aa16.78■□□□□ 0.28
VPS39-206ENST00000562662 SALL3Q9BXA9 1300 aa16.77■□□□□ 0.28
VPS39-206ENST00000562662 DDR1Q08345 913 aa16.77■□□□□ 0.28
VPS39-206ENST00000562662 CCDC57Q2TAC2 916 aa16.77■□□□□ 0.28
VPS39-206ENST00000562662 TPTE2Q6XPS3 522 aa16.77■□□□□ 0.28
VPS39-206ENST00000562662 C16orf71Q8IYS4 520 aaPredicted RBP16.77■□□□□ 0.28
VPS39-206ENST00000562662 POLRMTO00411 1230 aaKnown RBP16.76■□□□□ 0.27
VPS39-206ENST00000562662 MSH5O43196 834 aa16.76■□□□□ 0.27
VPS39-206ENST00000562662 ITGA6P23229 1130 aa16.76■□□□□ 0.27
VPS39-206ENST00000562662 IFIT5Q13325 482 aaKnown RBP16.76■□□□□ 0.27
VPS39-206ENST00000562662 SF3B3Q15393 1217 aaKnown RBP16.76■□□□□ 0.27
VPS39-206ENST00000562662 C3orf67Q6ZVT6 689 aa16.76■□□□□ 0.27
VPS39-206ENST00000562662 ATG9AQ7Z3C6 839 aa16.76■□□□□ 0.27
VPS39-206ENST00000562662 PLEKHM2Q8IWE5 1019 aa16.76■□□□□ 0.27
VPS39-206ENST00000562662 NLGN1Q8N2Q7 840 aa16.76■□□□□ 0.27
VPS39-206ENST00000562662 OTUD7AQ8TE49 926 aaPredicted RBP16.76■□□□□ 0.27
VPS39-206ENST00000562662 IL1RAPL2Q9NP60 686 aa16.76■□□□□ 0.27
VPS39-206ENST00000562662 ANKRD18BA2A2Z9 1011 aa16.75■□□□□ 0.27
VPS39-206ENST00000562662 EYA2O00167 538 aa16.75■□□□□ 0.27
VPS39-206ENST00000562662 CIAO1O76071 339 aa16.75■□□□□ 0.27
VPS39-206ENST00000562662 SERPINB2P05120 415 aa16.75■□□□□ 0.27
VPS39-206ENST00000562662 GTF2E1P29083 439 aaPredicted RBP16.75■□□□□ 0.27
VPS39-206ENST00000562662 CCDC152Q4G0S7 254 aa16.75■□□□□ 0.27
VPS39-206ENST00000562662 PRR5LQ6MZQ0 368 aa16.75■□□□□ 0.27
VPS39-206ENST00000562662 UPF1Q92900 1129 aaKnown RBP eCLIP16.75■□□□□ 0.27
VPS39-206ENST00000562662 FBXO3Q9UK99 471 aa16.75■□□□□ 0.27
VPS39-206ENST00000562662 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.75■□□□□ 0.27
VPS39-206ENST00000562662 LRRC24Q50LG9 513 aa16.74■□□□□ 0.27
VPS39-206ENST00000562662 CCDC24Q8N4L8 307 aa16.74■□□□□ 0.27
VPS39-206ENST00000562662 CNBD1Q8NA66 436 aa16.74■□□□□ 0.27
VPS39-206ENST00000562662 PUS3Q9BZE2 481 aaKnown RBP16.74■□□□□ 0.27
VPS39-206ENST00000562662 IL15P40933 162 aaPredicted RBP16.73■□□□□ 0.27
VPS39-206ENST00000562662 SEC31BQ9NQW1 1179 aa16.73■□□□□ 0.27
VPS39-206ENST00000562662 AK9Q5TCS8 1911 aa16.72■□□□□ 0.27
VPS39-206ENST00000562662 TFCP2Q12800 502 aa16.72■□□□□ 0.27
VPS39-206ENST00000562662 TAF7LQ5H9L4 462 aa16.72■□□□□ 0.27
VPS39-206ENST00000562662 NLRP3Q96P20 1036 aa16.72■□□□□ 0.27
VPS39-206ENST00000562662 BCL11AQ9H165 835 aa16.72■□□□□ 0.27
VPS39-206ENST00000562662 OSBPL3Q9H4L5 887 aa16.72■□□□□ 0.27
VPS39-206ENST00000562662 ARAP2Q8WZ64 1704 aa16.71■□□□□ 0.27
VPS39-206ENST00000562662 PDE1AP54750 535 aa16.71■□□□□ 0.27
VPS39-206ENST00000562662 CLASRPQ8N2M8 674 aaKnown RBP16.71■□□□□ 0.27
VPS39-206ENST00000562662 NPHP1O15259 732 aa16.7■□□□□ 0.26
VPS39-206ENST00000562662 MX1P20591 662 aa16.7■□□□□ 0.26
VPS39-206ENST00000562662 ST5P78524 1137 aa16.7■□□□□ 0.26
VPS39-206ENST00000562662 MSL1Q68DK7 614 aa16.7■□□□□ 0.26
VPS39-206ENST00000562662 EAF2Q96CJ1 260 aaPredicted RBP16.7■□□□□ 0.26
VPS39-206ENST00000562662 STAP2Q9UGK3 403 aa16.7■□□□□ 0.26
VPS39-206ENST00000562662 RIPOR2Q9Y4F9 1068 aa16.7■□□□□ 0.26
VPS39-206ENST00000562662 COL11A2P13942 1736 aaPredicted RBP16.7■□□□□ 0.26
VPS39-206ENST00000562662 ZNF609O15014 1411 aa16.7■□□□□ 0.26
VPS39-206ENST00000562662 MMP10P09238 476 aa16.69■□□□□ 0.26
VPS39-206ENST00000562662 TNNI3KQ59H18 835 aa16.69■□□□□ 0.26
VPS39-206ENST00000562662 TTC22Q5TAA0 569 aa16.69■□□□□ 0.26
VPS39-206ENST00000562662 LDHAL6AQ6ZMR3 332 aa16.69■□□□□ 0.26
VPS39-206ENST00000562662 AACSQ86V21 672 aa16.69■□□□□ 0.26
VPS39-206ENST00000562662 PDGFDQ9GZP0 370 aaPredicted RBP16.69■□□□□ 0.26
VPS39-206ENST00000562662 GPR108Q9NPR9 543 aa16.69■□□□□ 0.26
VPS39-206ENST00000562662 FPGT-TNNI3KV9GXZ4 949 aa16.69■□□□□ 0.26
VPS39-206ENST00000562662 AOX1Q06278 1338 aa16.69■□□□□ 0.26
VPS39-206ENST00000562662 GSPT1P15170 499 aaKnown RBP16.68■□□□□ 0.26
VPS39-206ENST00000562662 BMP2KLQ5H9B9 411 aa16.68■□□□□ 0.26
VPS39-206ENST00000562662 CDC5LQ99459 802 aaKnown RBP16.68■□□□□ 0.26
VPS39-206ENST00000562662 PARP3Q9Y6F1 533 aa16.68■□□□□ 0.26
VPS39-206ENST00000562662 KLRG2A4D1S0 409 aaPredicted RBP16.67■□□□□ 0.26
VPS39-206ENST00000562662 IGHMBP2P38935 993 aaKnown RBP16.67■□□□□ 0.26
VPS39-206ENST00000562662 CRY2Q49AN0 593 aa16.67■□□□□ 0.26
VPS39-206ENST00000562662 TSHZ3Q63HK5 1081 aa16.67■□□□□ 0.26
VPS39-206ENST00000562662 VGLL2Q8N8G2 317 aa16.67■□□□□ 0.26
VPS39-206ENST00000562662 CCDC8Q9H0W5 538 aaPredicted RBP16.67■□□□□ 0.26
VPS39-206ENST00000562662 CNNM1Q9NRU3 951 aa16.67■□□□□ 0.26
VPS39-206ENST00000562662 TLR7Q9NYK1 1049 aaKnown RBP16.67■□□□□ 0.26
VPS39-206ENST00000562662 CEP126Q9P2H0 1117 aa16.67■□□□□ 0.26
VPS39-206ENST00000562662 IFIT2P09913 472 aaKnown RBP16.66■□□□□ 0.26
VPS39-206ENST00000562662 C8orf34Q49A92 452 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms