RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 GOLGA6L6A8MZA4 724 aa15.75■□□□□ 0.11
CLK3-206ENST00000562078 CYP27B1O15528 508 aa15.75■□□□□ 0.11
CLK3-206ENST00000562078 MX1P20591 662 aa15.75■□□□□ 0.11
CLK3-206ENST00000562078 PWP2Q15269 919 aaKnown RBP15.75■□□□□ 0.11
CLK3-206ENST00000562078 YY1AP1Q9H869 796 aa15.75■□□□□ 0.11
CLK3-206ENST00000562078 NRAPQ86VF7 1730 aa15.75■□□□□ 0.11
CLK3-206ENST00000562078 PCDH11XQ9BZA7 1347 aa15.75■□□□□ 0.11
CLK3-206ENST00000562078 PCDH11YQ9BZA8 1340 aa15.75■□□□□ 0.11
CLK3-206ENST00000562078 SHANK3Q9BYB0 1731 aa15.75■□□□□ 0.11
CLK3-206ENST00000562078 GIMAP6Q6P9H5 292 aa15.75■□□□□ 0.11
CLK3-206ENST00000562078 SRCIN1Q9C0H9 1055 aa15.75■□□□□ 0.11
CLK3-206ENST00000562078 ZNF215Q9UL58 517 aaPredicted RBP15.75■□□□□ 0.11
CLK3-206ENST00000562078 PAXBP1Q9Y5B6 917 aa15.75■□□□□ 0.11
CLK3-206ENST00000562078 PRAMEF22A3QJZ6 481 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 PI4KAP2A4QPH2 592 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 NOP2P46087 812 aaKnown RBP15.74■□□□□ 0.11
CLK3-206ENST00000562078 NEK4P51957 841 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 PI4KAP1Q8N8J0 262 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 NFATC2IPQ8NCF5 419 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 ZNF446Q9NWS9 450 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 ADCY9O60503 1353 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 GIGYF1O75420 1035 aaPredicted RBP15.74■□□□□ 0.11
CLK3-206ENST00000562078 PSEN1P49768 467 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 MMP14P50281 582 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 KIF1BPQ96EK5 621 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 HDAC5Q9UQL6 1122 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 NWD2Q9ULI1 1742 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 HEG1Q9ULI3 1381 aa15.74■□□□□ 0.11
CLK3-206ENST00000562078 ATP8B2P98198 1209 aa15.73■□□□□ 0.11
CLK3-206ENST00000562078 ELF2Q15723 593 aa15.73■□□□□ 0.11
CLK3-206ENST00000562078 PROSER3Q2NL68 480 aa15.73■□□□□ 0.11
CLK3-206ENST00000562078 DNAAF4Q8WXU2 420 aa15.73■□□□□ 0.11
CLK3-206ENST00000562078 GTF3C6Q969F1 213 aa15.73■□□□□ 0.11
CLK3-206ENST00000562078 DBF4Q9UBU7 674 aaPredicted RBP15.73■□□□□ 0.11
CLK3-206ENST00000562078 WNK3Q9BYP7 1800 aa15.73■□□□□ 0.11
CLK3-206ENST00000562078 SDSP20132 328 aa15.73■□□□□ 0.11
CLK3-206ENST00000562078 CCDC186Q7Z3E2 898 aa15.73■□□□□ 0.11
CLK3-206ENST00000562078 DCAF5Q96JK2 942 aa15.73■□□□□ 0.11
CLK3-206ENST00000562078 FUCA2Q9BTY2 467 aa15.73■□□□□ 0.11
CLK3-206ENST00000562078 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.73■□□□□ 0.11
CLK3-206ENST00000562078 GYS2P54840 703 aa15.72■□□□□ 0.11
CLK3-206ENST00000562078 FAM193AP78312 1265 aa15.72■□□□□ 0.11
CLK3-206ENST00000562078 NEK11Q8NG66 645 aa15.72■□□□□ 0.11
CLK3-206ENST00000562078 DDX54Q8TDD1 881 aaKnown RBP15.72■□□□□ 0.11
CLK3-206ENST00000562078 DHX16O60231 1041 aaKnown RBP15.72■□□□□ 0.11
CLK3-206ENST00000562078 LRRCC1Q9C099 1032 aa15.72■□□□□ 0.11
CLK3-206ENST00000562078 RASSF4Q9H2L5 321 aa15.72■□□□□ 0.11
CLK3-206ENST00000562078 SLC52A2Q9HAB3 445 aa15.72■□□□□ 0.11
CLK3-206ENST00000562078 NRBP1Q9UHY1 535 aa15.72■□□□□ 0.11
CLK3-206ENST00000562078 CNPY2Q9Y2B0 182 aa15.72■□□□□ 0.11
CLK3-206ENST00000562078 TCHHQ07283 1943 aa15.72■□□□□ 0.11
CLK3-206ENST00000562078 TRIM66O15016 1216 aa15.71■□□□□ 0.11
CLK3-206ENST00000562078 SLC39A6Q13433 755 aa15.71■□□□□ 0.11
CLK3-206ENST00000562078 BEND3Q5T5X7 828 aa15.71■□□□□ 0.11
CLK3-206ENST00000562078 CREBRFQ8IUR6 639 aa15.71■□□□□ 0.11
CLK3-206ENST00000562078 NPHP1O15259 732 aa15.71■□□□□ 0.1
CLK3-206ENST00000562078 MYCNP04198 464 aaPredicted RBP15.71■□□□□ 0.1
CLK3-206ENST00000562078 PDE1AP54750 535 aa15.71■□□□□ 0.1
CLK3-206ENST00000562078 TPD52L1Q16890 204 aaPredicted RBP15.71■□□□□ 0.1
CLK3-206ENST00000562078 SYT10Q6XYQ8 523 aa15.71■□□□□ 0.1
CLK3-206ENST00000562078 NBPF7P0C2Y1 421 aaPredicted RBP15.7■□□□□ 0.1
CLK3-206ENST00000562078 TSHZ3Q63HK5 1081 aa15.7■□□□□ 0.1
CLK3-206ENST00000562078 CEP135Q66GS9 1140 aa15.7■□□□□ 0.1
CLK3-206ENST00000562078 CCDC9Q9Y3X0 531 aaKnown RBP15.7■□□□□ 0.1
CLK3-206ENST00000562078 GTF2A1P52655 376 aaPredicted RBP15.7■□□□□ 0.1
CLK3-206ENST00000562078 C8orf37Q96NL8 207 aa15.7■□□□□ 0.1
CLK3-206ENST00000562078 MRC1P22897 1456 aa15.69■□□□□ 0.1
CLK3-206ENST00000562078 REC8O95072 547 aa15.69■□□□□ 0.1
CLK3-206ENST00000562078 PRR29P0C7W0 189 aa15.69■□□□□ 0.1
CLK3-206ENST00000562078 C10orf67Q8IYJ2 551 aa15.69■□□□□ 0.1
CLK3-206ENST00000562078 CABP4P57796 275 aa15.69■□□□□ 0.1
CLK3-206ENST00000562078 CUL4AQ13619 759 aa15.69■□□□□ 0.1
CLK3-206ENST00000562078 ZNF790Q6PG37 636 aa15.69■□□□□ 0.1
CLK3-206ENST00000562078 PPP1R42Q7Z4L9 355 aa15.69■□□□□ 0.1
CLK3-206ENST00000562078 LCMT1Q9UIC8 334 aa15.69■□□□□ 0.1
CLK3-206ENST00000562078 MAP3K2Q9Y2U5 619 aa15.69■□□□□ 0.1
CLK3-206ENST00000562078 SALL3Q9BXA9 1300 aa15.68■□□□□ 0.1
CLK3-206ENST00000562078 SLIT2O94813 1529 aa15.68■□□□□ 0.1
CLK3-206ENST00000562078 HSPA1LP34931 641 aa15.68■□□□□ 0.1
CLK3-206ENST00000562078 SSH3Q8TE77 659 aa15.68■□□□□ 0.1
CLK3-206ENST00000562078 NGLY1Q96IV0 654 aa15.68■□□□□ 0.1
CLK3-206ENST00000562078 OSBPL3Q9H4L5 887 aa15.68■□□□□ 0.1
CLK3-206ENST00000562078 AFDNP55196 1824 aaKnown RBP15.68■□□□□ 0.1
CLK3-206ENST00000562078 LAMB4A4D0S4 1761 aa15.68■□□□□ 0.1
CLK3-206ENST00000562078 DISP2A7MBM2 1401 aa15.68■□□□□ 0.1
CLK3-206ENST00000562078 ZSCAN25Q6NSZ9 544 aa15.68■□□□□ 0.1
CLK3-206ENST00000562078 DRC7Q8IY82 874 aa15.68■□□□□ 0.1
CLK3-206ENST00000562078 BCCIPQ9P287 314 aaKnown RBP eCLIP15.68■□□□□ 0.1
CLK3-206ENST00000562078 SPATA31A6Q5VVP1 1343 aa15.67■□□□□ 0.1
CLK3-206ENST00000562078 SRGAP3O43295 1099 aa15.67■□□□□ 0.1
CLK3-206ENST00000562078 APPP05067 770 aa15.67■□□□□ 0.1
CLK3-206ENST00000562078 CASC1Q6TDU7 716 aa15.67■□□□□ 0.1
CLK3-206ENST00000562078 KRBA2Q6ZNG9 492 aa15.67■□□□□ 0.1
CLK3-206ENST00000562078 TMEM87AQ8NBN3 555 aa15.67■□□□□ 0.1
CLK3-206ENST00000562078 FHOD1Q9Y613 1164 aa15.67■□□□□ 0.1
CLK3-206ENST00000562078 SPATA31A1Q5TZJ5 1347 aa15.66■□□□□ 0.1
CLK3-206ENST00000562078 TTC5Q8N0Z6 440 aa15.66■□□□□ 0.1
CLK3-206ENST00000562078 HYPKQ9NX55 129 aa15.66■□□□□ 0.1
CLK3-206ENST00000562078 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.66■□□□□ 0.1
CLK3-206ENST00000562078 KAT6BQ8WYB5 2073 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms