RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PSMA5P28066 241 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 ATP6V1AP38606 617 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 NUCB2P80303 420 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 CCDC158Q5M9N0 1113 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 ZSCAN25Q6NSZ9 544 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 LMBR1LQ6UX01 489 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 C16orf71Q8IYS4 520 aaPredicted RBP9.08□□□□□ -0.96
VPS39-204ENST00000561818 KAZALD1Q96I82 304 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 GBP4Q96PP9 640 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 ZBTB3Q9H5J0 574 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 ANO2Q9NQ90 1003 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 MROH5Q6ZUA9 1318 aa9.07□□□□□ -0.96
VPS39-204ENST00000561818 DDX11L8A8MPP1 907 aa9.07□□□□□ -0.96
VPS39-204ENST00000561818 ATP5J2-PTCD1G3V325 749 aa9.07□□□□□ -0.96
VPS39-204ENST00000561818 ONECUT3O60422 494 aaPredicted RBP9.07□□□□□ -0.96
VPS39-204ENST00000561818 RFX5P48382 616 aaPredicted RBP9.07□□□□□ -0.96
VPS39-204ENST00000561818 CTSWP56202 376 aa9.07□□□□□ -0.96
VPS39-204ENST00000561818 FOXO4P98177 505 aa9.07□□□□□ -0.96
VPS39-204ENST00000561818 ANKRD1Q15327 319 aa9.07□□□□□ -0.96
VPS39-204ENST00000561818 TTF1Q15361 905 aaPredicted RBP9.07□□□□□ -0.96
VPS39-204ENST00000561818 CCDC152Q4G0S7 254 aa9.07□□□□□ -0.96
VPS39-204ENST00000561818 TTLL7Q6ZT98 887 aa9.07□□□□□ -0.96
VPS39-204ENST00000561818 NLRP10Q86W26 655 aa9.07□□□□□ -0.96
VPS39-204ENST00000561818 MARCH10Q8NA82 808 aaPredicted RBP9.07□□□□□ -0.96
VPS39-204ENST00000561818 ZNF512BQ96KM6 892 aaPredicted RBP9.07□□□□□ -0.96
VPS39-204ENST00000561818 TM6SF1Q9BZW5 370 aa9.07□□□□□ -0.96
VPS39-204ENST00000561818 CHMP3Q9Y3E7 222 aa9.07□□□□□ -0.96
VPS39-204ENST00000561818 ATRNO75882 1429 aa9.06□□□□□ -0.96
VPS39-204ENST00000561818 SASH1O94885 1247 aa9.06□□□□□ -0.96
VPS39-204ENST00000561818 HSPA4P34932 840 aa9.06□□□□□ -0.96
VPS39-204ENST00000561818 CRKLP46109 303 aaKnown RBP9.06□□□□□ -0.96
VPS39-204ENST00000561818 NUTM1Q86Y26 1132 aa9.06□□□□□ -0.96
VPS39-204ENST00000561818 OTUD7AQ8TE49 926 aaPredicted RBP9.06□□□□□ -0.96
VPS39-204ENST00000561818 INTS4Q96HW7 963 aaKnown RBP9.06□□□□□ -0.96
VPS39-204ENST00000561818 GJD4Q96KN9 370 aaPredicted RBP9.06□□□□□ -0.96
VPS39-204ENST00000561818 CDC5LQ99459 802 aaKnown RBP9.06□□□□□ -0.96
VPS39-204ENST00000561818 HAUS7Q99871 368 aa9.06□□□□□ -0.96
VPS39-204ENST00000561818 FSD1Q9BTV5 496 aa9.06□□□□□ -0.96
VPS39-204ENST00000561818 UTP14AQ9BVJ6 771 aaKnown RBP9.06□□□□□ -0.96
VPS39-204ENST00000561818 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.06□□□□□ -0.96
VPS39-204ENST00000561818 TRMT112Q9UI30 125 aaKnown RBP9.06□□□□□ -0.96
VPS39-204ENST00000561818 ZNF609O15014 1411 aa9.05□□□□□ -0.96
VPS39-204ENST00000561818 A0A0G2JS52 829 aa9.05□□□□□ -0.96
VPS39-204ENST00000561818 IRS4O14654 1257 aaPredicted RBP9.05□□□□□ -0.96
VPS39-204ENST00000561818 HMGB1P09429 215 aaKnown RBP9.05□□□□□ -0.96
VPS39-204ENST00000561818 UQCRFS1P1P0C7P4 283 aa9.05□□□□□ -0.96
VPS39-204ENST00000561818 FAM98CQ17RN3 349 aaKnown RBP9.05□□□□□ -0.96
VPS39-204ENST00000561818 SLC27A3Q5K4L6 730 aa9.05□□□□□ -0.96
VPS39-204ENST00000561818 ZNF34Q8IZ26 560 aa9.05□□□□□ -0.96
VPS39-204ENST00000561818 ZBTB1Q9Y2K1 713 aa9.05□□□□□ -0.96
VPS39-204ENST00000561818 ZNF330Q9Y3S2 320 aaPredicted RBP9.05□□□□□ -0.96
VPS39-204ENST00000561818 MYH3P11055 1940 aa9.05□□□□□ -0.96
VPS39-204ENST00000561818 COL5A3P25940 1745 aaPredicted RBP9.05□□□□□ -0.96
VPS39-204ENST00000561818 LAMB2P55268 1798 aa9.04□□□□□ -0.96
VPS39-204ENST00000561818 CARMIL3Q8ND23 1372 aa9.04□□□□□ -0.96
VPS39-204ENST00000561818 ATXN8OSP0DMR3 200 aa9.04□□□□□ -0.96
VPS39-204ENST00000561818 IGHMBP2P38935 993 aaKnown RBP9.04□□□□□ -0.96
VPS39-204ENST00000561818 GORABQ5T7V8 394 aa9.04□□□□□ -0.96
VPS39-204ENST00000561818 KBTBD3Q8NAB2 608 aa9.04□□□□□ -0.96
VPS39-204ENST00000561818 EAF2Q96CJ1 260 aaPredicted RBP9.04□□□□□ -0.96
VPS39-204ENST00000561818 ZSCAN31Q96LW9 406 aaPredicted RBP9.04□□□□□ -0.96
VPS39-204ENST00000561818 SH2B1Q9NRF2 756 aaPredicted RBP9.04□□□□□ -0.96
VPS39-204ENST00000561818 HELLSQ9NRZ9 838 aa9.04□□□□□ -0.96
VPS39-204ENST00000561818 PA2G4Q9UQ80 394 aaKnown RBP9.04□□□□□ -0.96
VPS39-204ENST00000561818 LRP5O75197 1615 aa9.04□□□□□ -0.96
VPS39-204ENST00000561818 RIC1Q4ADV7 1423 aa9.04□□□□□ -0.96
VPS39-204ENST00000561818 BCORQ6W2J9 1755 aa9.04□□□□□ -0.96
VPS39-204ENST00000561818 KCNJ4P48050 445 aa9.03□□□□□ -0.96
VPS39-204ENST00000561818 NT5C2P49902 561 aa9.03□□□□□ -0.96
VPS39-204ENST00000561818 TFCP2Q12800 502 aa9.03□□□□□ -0.96
VPS39-204ENST00000561818 PUM3Q15397 648 aaKnown RBP9.03□□□□□ -0.96
VPS39-204ENST00000561818 SKOR2Q2VWA4 1001 aaPredicted RBP9.03□□□□□ -0.96
VPS39-204ENST00000561818 ZNF772Q68DY9 489 aaPredicted RBP9.03□□□□□ -0.96
VPS39-204ENST00000561818 INTS5Q6P9B9 1019 aaKnown RBP9.03□□□□□ -0.96
VPS39-204ENST00000561818 LDHAL6AQ6ZMR3 332 aa9.03□□□□□ -0.96
VPS39-204ENST00000561818 FAM196AQ6ZSG2 479 aa9.03□□□□□ -0.96
VPS39-204ENST00000561818 KLHL34Q8N239 644 aa9.03□□□□□ -0.96
VPS39-204ENST00000561818 ARXQ96QS3 562 aa9.03□□□□□ -0.96
VPS39-204ENST00000561818 MPHOSPH8Q99549 860 aa9.03□□□□□ -0.96
VPS39-204ENST00000561818 SIL1Q9H173 461 aa9.03□□□□□ -0.96
VPS39-204ENST00000561818 CTNNA3Q9UI47 895 aa9.03□□□□□ -0.96
VPS39-204ENST00000561818 ISY1Q9ULR0 285 aaKnown RBP9.03□□□□□ -0.96
VPS39-204ENST00000561818 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.03□□□□□ -0.96
VPS39-204ENST00000561818 SCN7AQ01118 1682 aa9.03□□□□□ -0.96
VPS39-204ENST00000561818 CCDC171Q6TFL3 1326 aa9.03□□□□□ -0.96
VPS39-204ENST00000561818 ZPR1O75312 459 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 RPS6KA4O75676 772 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 CAMTA2O94983 1202 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 IFIT1P09914 478 aaKnown RBP9.02□□□□□ -0.97
VPS39-204ENST00000561818 SLC5A1P13866 664 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 ITGA6P23229 1130 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 TSGA10IPQ3SY00 556 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 METTL24Q5JXM2 366 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 EPHA10Q5JZY3 1008 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 TTC39AQ5SRH9 613 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 TTLL11Q8NHH1 800 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 LPIN2Q92539 896 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 KCNB2Q92953 911 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 KIF2CQ99661 725 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 BCL11BQ9C0K0 894 aaPredicted RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 185.4 ms