RNA–Protein interactions for RNA: ENST00000561749.1

SMPD3-202, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-202ENST00000561749 CASP7P55210 303 aa29.63■■■□□ 2.33
SMPD3-202ENST00000561749 SPEF2Q9C093 1822 aa29.62■■■□□ 2.33
SMPD3-202ENST00000561749 NFKBIEO00221 500 aa29.62■■■□□ 2.33
SMPD3-202ENST00000561749 FRAT1Q92837 279 aaPredicted RBP29.62■■■□□ 2.33
SMPD3-202ENST00000561749 API5Q9BZZ5 524 aaKnown RBP29.61■■■□□ 2.33
SMPD3-202ENST00000561749 C9orf78Q9NZ63 289 aaPredicted RBP29.61■■■□□ 2.33
SMPD3-202ENST00000561749 GRM8O00222 908 aa29.6■■■□□ 2.33
SMPD3-202ENST00000561749 CTSWP56202 376 aa29.6■■■□□ 2.33
SMPD3-202ENST00000561749 GRAPQ13588 217 aa29.6■■■□□ 2.33
SMPD3-202ENST00000561749 CCDC93Q567U6 631 aa29.6■■■□□ 2.33
SMPD3-202ENST00000561749 GRAPLQ8TC17 118 aaPredicted RBP29.6■■■□□ 2.33
SMPD3-202ENST00000561749 SEC31BQ9NQW1 1179 aa29.6■■■□□ 2.33
SMPD3-202ENST00000561749 CCDC152Q4G0S7 254 aa29.59■■■□□ 2.33
SMPD3-202ENST00000561749 SOGA3Q5TF21 947 aa29.59■■■□□ 2.33
SMPD3-202ENST00000561749 CELF1Q92879 486 aaKnown RBP29.59■■■□□ 2.33
SMPD3-202ENST00000561749 TNNQ9UQP3 1299 aa29.59■■■□□ 2.33
SMPD3-202ENST00000561749 PRELPP51888 382 aa29.57■■■□□ 2.32
SMPD3-202ENST00000561749 C9orf131Q5VYM1 1079 aa29.57■■■□□ 2.32
SMPD3-202ENST00000561749 TTLL11Q8NHH1 800 aa29.56■■■□□ 2.32
SMPD3-202ENST00000561749 PLA2G12BQ9BX93 195 aa29.56■■■□□ 2.32
SMPD3-202ENST00000561749 RNF181Q9P0P0 153 aa29.56■■■□□ 2.32
SMPD3-202ENST00000561749 DICER1Q9UPY3 1922 aaKnown RBP29.55■■■□□ 2.32
SMPD3-202ENST00000561749 UTRNP46939 3433 aa29.55■■■□□ 2.32
SMPD3-202ENST00000561749 BBOX1O75936 387 aa29.55■■■□□ 2.32
SMPD3-202ENST00000561749 ARHGAP45Q92619 1136 aa29.55■■■□□ 2.32
SMPD3-202ENST00000561749 TAOK3Q9H2K8 898 aa29.55■■■□□ 2.32
SMPD3-202ENST00000561749 GREM2Q9H772 168 aa29.55■■■□□ 2.32
SMPD3-202ENST00000561749 LRRC37AA6NMS7 1700 aa29.54■■■□□ 2.32
SMPD3-202ENST00000561749 TIAM2Q8IVF5 1701 aa29.54■■■□□ 2.32
SMPD3-202ENST00000561749 IPO8O15397 1037 aaKnown RBP29.54■■■□□ 2.32
SMPD3-202ENST00000561749 NBPF7P0C2Y1 421 aaPredicted RBP29.54■■■□□ 2.32
SMPD3-202ENST00000561749 ATP6V0A2Q9Y487 856 aa29.54■■■□□ 2.32
SMPD3-202ENST00000561749 SNED1Q8TER0 1413 aa29.54■■■□□ 2.32
SMPD3-202ENST00000561749 TRIM27P14373 513 aa29.53■■■□□ 2.32
SMPD3-202ENST00000561749 CCT4P50991 539 aaKnown RBP29.53■■■□□ 2.32
SMPD3-202ENST00000561749 EPHA10Q5JZY3 1008 aa29.53■■■□□ 2.32
SMPD3-202ENST00000561749 CLUAP1Q96AJ1 413 aa29.53■■■□□ 2.32
SMPD3-202ENST00000561749 FOXO4P98177 505 aa29.52■■■□□ 2.32
SMPD3-202ENST00000561749 ATF7IPQ6VMQ6 1270 aa29.52■■■□□ 2.32
SMPD3-202ENST00000561749 RTKN2Q8IZC4 609 aa29.52■■■□□ 2.32
SMPD3-202ENST00000561749 SUCLG2Q96I99 432 aa29.52■■■□□ 2.32
SMPD3-202ENST00000561749 LTBP3Q9NS15 1303 aa29.51■■■□□ 2.32
SMPD3-202ENST00000561749 LMNB1P20700 586 aa29.51■■■□□ 2.31
SMPD3-202ENST00000561749 RPS8P62241 208 aaKnown RBP29.51■■■□□ 2.31
SMPD3-202ENST00000561749 FKBP4Q02790 459 aaKnown RBP eCLIP29.51■■■□□ 2.31
SMPD3-202ENST00000561749 FAM161AQ3B820 660 aa29.51■■■□□ 2.31
SMPD3-202ENST00000561749 ZKSCAN2Q63HK3 967 aa29.51■■■□□ 2.31
SMPD3-202ENST00000561749 CC2D2BQ6DHV5 1058 aa29.51■■■□□ 2.31
SMPD3-202ENST00000561749 SP8Q8IXZ3 490 aa29.51■■■□□ 2.31
SMPD3-202ENST00000561749 TMX4Q9H1E5 349 aaPredicted RBP29.51■■■□□ 2.31
SMPD3-202ENST00000561749 USP44Q9H0E7 712 aa29.5■■■□□ 2.31
SMPD3-202ENST00000561749 ZNF277Q9NRM2 450 aaPredicted RBP29.5■■■□□ 2.31
SMPD3-202ENST00000561749 CHMP3Q9Y3E7 222 aa29.5■■■□□ 2.31
SMPD3-202ENST00000561749 UTYO14607 1347 aa29.49■■■□□ 2.31
SMPD3-202ENST00000561749 CSF1RP07333 972 aa29.49■■■□□ 2.31
SMPD3-202ENST00000561749 LMBR1LQ6UX01 489 aa29.48■■■□□ 2.31
SMPD3-202ENST00000561749 ANKRD18AQ8IVF6 992 aa29.48■■■□□ 2.31
SMPD3-202ENST00000561749 KAZALD1Q96I82 304 aa29.48■■■□□ 2.31
SMPD3-202ENST00000561749 RTL9Q8NET4 1388 aa29.48■■■□□ 2.31
SMPD3-202ENST00000561749 ITGA6P23229 1130 aa29.47■■■□□ 2.31
SMPD3-202ENST00000561749 TMC4Q7Z404 712 aa29.47■■■□□ 2.31
SMPD3-202ENST00000561749 CDC5LQ99459 802 aaKnown RBP29.47■■■□□ 2.31
SMPD3-202ENST00000561749 RCAN3Q9UKA8 241 aa29.47■■■□□ 2.31
SMPD3-202ENST00000561749 INTS3Q68E01 1043 aaKnown RBP29.45■■■□□ 2.31
SMPD3-202ENST00000561749 MPNDQ8N594 471 aa29.45■■■□□ 2.31
SMPD3-202ENST00000561749 DUOX1Q9NRD9 1551 aa29.44■■■□□ 2.3
SMPD3-202ENST00000561749 DPP8Q6V1X1 898 aaPredicted RBP29.44■■■□□ 2.3
SMPD3-202ENST00000561749 ZNF526Q8TF50 670 aaPredicted RBP29.44■■■□□ 2.3
SMPD3-202ENST00000561749 PSMD1Q99460 953 aa29.44■■■□□ 2.3
SMPD3-202ENST00000561749 BICC1Q9H694 974 aaKnown RBP29.44■■■□□ 2.3
SMPD3-202ENST00000561749 LTBP1Q14766 1721 aa29.43■■■□□ 2.3
SMPD3-202ENST00000561749 GPSM2P81274 684 aa29.43■■■□□ 2.3
SMPD3-202ENST00000561749 GRIPAP1Q4V328 841 aa29.43■■■□□ 2.3
SMPD3-202ENST00000561749 ANKRD18BA2A2Z9 1011 aa29.42■■■□□ 2.3
SMPD3-202ENST00000561749 IARSP41252 1262 aaKnown RBP29.42■■■□□ 2.3
SMPD3-202ENST00000561749 TMEM57Q8N5G2 664 aa29.42■■■□□ 2.3
SMPD3-202ENST00000561749 ZNF784Q8NCA9 323 aaPredicted RBP29.42■■■□□ 2.3
SMPD3-202ENST00000561749 MEIS3Q99687 375 aa29.42■■■□□ 2.3
SMPD3-202ENST00000561749 NSFL1CQ9UNZ2 370 aaKnown RBP29.42■■■□□ 2.3
SMPD3-202ENST00000561749 UBTFL1P0CB47 393 aaPredicted RBP29.41■■■□□ 2.3
SMPD3-202ENST00000561749 IFIT5Q13325 482 aaKnown RBP29.41■■■□□ 2.3
SMPD3-202ENST00000561749 ANKRD44Q8N8A2 993 aa29.41■■■□□ 2.3
SMPD3-202ENST00000561749 COL4A5P29400 1685 aa29.4■■■□□ 2.3
SMPD3-202ENST00000561749 IGHMBP2P38935 993 aaKnown RBP29.4■■■□□ 2.3
SMPD3-202ENST00000561749 FTSJ3Q8IY81 847 aaKnown RBP29.4■■■□□ 2.3
SMPD3-202ENST00000561749 RLBP1P12271 317 aa29.39■■■□□ 2.3
SMPD3-202ENST00000561749 DZIP1LQ8IYY4 767 aaKnown RBP29.39■■■□□ 2.3
SMPD3-202ENST00000561749 ZNF594Q96JF6 807 aaPredicted RBP29.39■■■□□ 2.3
SMPD3-202ENST00000561749 A0A1B0GUL6 1792 aa29.39■■■□□ 2.29
SMPD3-202ENST00000561749 CCDC57Q2TAC2 916 aa29.38■■■□□ 2.29
SMPD3-202ENST00000561749 BSDC1Q9NW68 430 aaPredicted RBP29.38■■■□□ 2.29
SMPD3-202ENST00000561749 PLIN1O60240 522 aa29.37■■■□□ 2.29
SMPD3-202ENST00000561749 AOC3Q16853 763 aa29.37■■■□□ 2.29
SMPD3-202ENST00000561749 RABL6Q3YEC7 729 aaPredicted RBP29.37■■■□□ 2.29
SMPD3-202ENST00000561749 SUPT20HQ8NEM7 779 aa29.37■■■□□ 2.29
SMPD3-202ENST00000561749 GPR101Q96P66 508 aaPredicted RBP29.37■■■□□ 2.29
SMPD3-202ENST00000561749 MPHOSPH8Q99549 860 aa29.37■■■□□ 2.29
SMPD3-202ENST00000561749 RTFDC1Q9BY42 306 aaPredicted RBP29.37■■■□□ 2.29
SMPD3-202ENST00000561749 ANKIB1Q9P2G1 1089 aa29.37■■■□□ 2.29
SMPD3-202ENST00000561749 PPIP5K2O43314 1243 aa29.36■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms