RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 MYD88Q99836 296 aa13.27□□□□□ -0.29
CLK3-205ENST00000561673 RTFDC1Q9BY42 306 aaPredicted RBP13.27□□□□□ -0.29
CLK3-205ENST00000561673 SALL2Q9Y467 1007 aaPredicted RBP13.27□□□□□ -0.29
CLK3-205ENST00000561673 COL4A5P29400 1685 aa13.27□□□□□ -0.29
CLK3-205ENST00000561673 ANKRD36CQ5JPF3 1778 aa13.27□□□□□ -0.29
CLK3-205ENST00000561673 IRS4O14654 1257 aaPredicted RBP13.26□□□□□ -0.29
CLK3-205ENST00000561673 PPIP5K2O43314 1243 aa13.26□□□□□ -0.29
CLK3-205ENST00000561673 ATXN8OSP0DMR3 200 aa13.26□□□□□ -0.29
CLK3-205ENST00000561673 EIF6P56537 245 aaKnown RBP13.26□□□□□ -0.29
CLK3-205ENST00000561673 IL16Q14005 1332 aa13.26□□□□□ -0.29
CLK3-205ENST00000561673 AOC3Q16853 763 aa13.26□□□□□ -0.29
CLK3-205ENST00000561673 DPP8Q6V1X1 898 aaPredicted RBP13.26□□□□□ -0.29
CLK3-205ENST00000561673 MPNDQ8N594 471 aa13.26□□□□□ -0.29
CLK3-205ENST00000561673 ZBTB38Q8NAP3 1195 aaPredicted RBP13.26□□□□□ -0.29
CLK3-205ENST00000561673 KLRG1Q96E93 195 aa13.26□□□□□ -0.29
CLK3-205ENST00000561673 VPS33BQ9H267 617 aa13.26□□□□□ -0.29
CLK3-205ENST00000561673 HACL1Q9UJ83 578 aa13.26□□□□□ -0.29
CLK3-205ENST00000561673 GJA3Q9Y6H8 435 aa13.26□□□□□ -0.29
CLK3-205ENST00000561673 DDX58O95786 925 aaKnown RBP13.25□□□□□ -0.29
CLK3-205ENST00000561673 EPHX2P34913 555 aa13.25□□□□□ -0.29
CLK3-205ENST00000561673 TWISTNBQ3B726 338 aaPredicted RBP13.25□□□□□ -0.29
CLK3-205ENST00000561673 EAPPQ56P03 285 aaPredicted RBP13.25□□□□□ -0.29
CLK3-205ENST00000561673 LDHDQ86WU2 507 aa13.25□□□□□ -0.29
CLK3-205ENST00000561673 NIM1KQ8IY84 436 aa13.25□□□□□ -0.29
CLK3-205ENST00000561673 CCDC191Q8NCU4 936 aa13.25□□□□□ -0.29
CLK3-205ENST00000561673 SUPT20HQ8NEM7 779 aa13.25□□□□□ -0.29
CLK3-205ENST00000561673 METTL22Q9BUU2 404 aaPredicted RBP13.25□□□□□ -0.29
CLK3-205ENST00000561673 TMC4Q7Z404 712 aa13.24□□□□□ -0.29
CLK3-205ENST00000561673 WDR63Q8IWG1 891 aa13.24□□□□□ -0.29
CLK3-205ENST00000561673 JARID2Q92833 1246 aaPredicted RBP13.24□□□□□ -0.29
CLK3-205ENST00000561673 CELF1Q92879 486 aaKnown RBP13.24□□□□□ -0.29
CLK3-205ENST00000561673 STK31Q9BXU1 1019 aa13.24□□□□□ -0.29
CLK3-205ENST00000561673 CWC25Q9NXE8 425 aaPredicted RBP13.24□□□□□ -0.29
CLK3-205ENST00000561673 MAP3K2Q9Y2U5 619 aa13.24□□□□□ -0.29
CLK3-205ENST00000561673 LAMB2P55268 1798 aa13.23□□□□□ -0.29
CLK3-205ENST00000561673 PI4KAP2A4QPH2 592 aa13.23□□□□□ -0.29
CLK3-205ENST00000561673 PCCAP05165 728 aaPredicted RBP13.23□□□□□ -0.29
CLK3-205ENST00000561673 KSR2Q6VAB6 950 aa13.23□□□□□ -0.29
CLK3-205ENST00000561673 G2E3Q7L622 706 aa13.23□□□□□ -0.29
CLK3-205ENST00000561673 PNMA8AQ86V59 439 aaPredicted RBP13.23□□□□□ -0.29
CLK3-205ENST00000561673 FAM9BQ8IZU0 186 aa13.23□□□□□ -0.29
CLK3-205ENST00000561673 PI4KAP1Q8N8J0 262 aa13.23□□□□□ -0.29
CLK3-205ENST00000561673 ZNRF3Q9ULT6 936 aa13.23□□□□□ -0.29
CLK3-205ENST00000561673 FANCIQ9NVI1 1328 aa13.22□□□□□ -0.29
CLK3-205ENST00000561673 IGKV5-2P06315 115 aa13.22□□□□□ -0.29
CLK3-205ENST00000561673 HSP90B1P14625 803 aaKnown RBP13.22□□□□□ -0.29
CLK3-205ENST00000561673 SCNN1DP51172 638 aa13.22□□□□□ -0.29
CLK3-205ENST00000561673 RPS8P62241 208 aaKnown RBP13.22□□□□□ -0.29
CLK3-205ENST00000561673 CXCL9Q07325 125 aa13.22□□□□□ -0.29
CLK3-205ENST00000561673 KIAA2012Q0VF49 1180 aa13.22□□□□□ -0.29
CLK3-205ENST00000561673 JMYQ8N9B5 988 aa13.22□□□□□ -0.29
CLK3-205ENST00000561673 CLEC11AQ9Y240 323 aa13.22□□□□□ -0.29
CLK3-205ENST00000561673 DDX60Q8IY21 1712 aaKnown RBP13.22□□□□□ -0.29
CLK3-205ENST00000561673 PASKQ96RG2 1323 aa13.21□□□□□ -0.29
CLK3-205ENST00000561673 SCN4AP35499 1836 aa13.21□□□□□ -0.29
CLK3-205ENST00000561673 ITGBL1O95965 494 aaPredicted RBP13.21□□□□□ -0.29
CLK3-205ENST00000561673 EPS15P42566 896 aa13.21□□□□□ -0.29
CLK3-205ENST00000561673 SPINK5Q9NQ38 1064 aaPredicted RBP13.21□□□□□ -0.29
CLK3-205ENST00000561673 SEC31BQ9NQW1 1179 aa13.21□□□□□ -0.29
CLK3-205ENST00000561673 NSFL1CQ9UNZ2 370 aaKnown RBP13.21□□□□□ -0.29
CLK3-205ENST00000561673 PDE8AO60658 829 aa13.2□□□□□ -0.3
CLK3-205ENST00000561673 VAMP4O75379 141 aa13.2□□□□□ -0.3
CLK3-205ENST00000561673 LMOD1P29536 600 aaPredicted RBP13.2□□□□□ -0.3
CLK3-205ENST00000561673 GPSM2P81274 684 aa13.2□□□□□ -0.3
CLK3-205ENST00000561673 EXOSC9Q06265 439 aaKnown RBP13.2□□□□□ -0.3
CLK3-205ENST00000561673 CCDC152Q4G0S7 254 aa13.2□□□□□ -0.3
CLK3-205ENST00000561673 MAP1SQ66K74 1059 aaPredicted RBP13.2□□□□□ -0.3
CLK3-205ENST00000561673 CREBZFQ9NS37 354 aa13.2□□□□□ -0.3
CLK3-205ENST00000561673 POLLQ9UGP5 575 aa13.2□□□□□ -0.3
CLK3-205ENST00000561673 TAF1P21675 1872 aa13.19□□□□□ -0.3
CLK3-205ENST00000561673 COL4A1P02462 1669 aa13.19□□□□□ -0.3
CLK3-205ENST00000561673 YDJCA8MPS7 323 aa13.19□□□□□ -0.3
CLK3-205ENST00000561673 RAD17O75943 681 aa13.19□□□□□ -0.3
CLK3-205ENST00000561673 NEXNQ0ZGT2 675 aa13.19□□□□□ -0.3
CLK3-205ENST00000561673 FLIIQ13045 1269 aa13.19□□□□□ -0.3
CLK3-205ENST00000561673 WASHC4Q2M389 1173 aa13.19□□□□□ -0.3
CLK3-205ENST00000561673 CWF19L2Q2TBE0 894 aaKnown RBP13.19□□□□□ -0.3
CLK3-205ENST00000561673 CNTROBQ8N137 903 aa13.19□□□□□ -0.3
CLK3-205ENST00000561673 CCDC85AQ96PX6 553 aaPredicted RBP13.19□□□□□ -0.3
CLK3-205ENST00000561673 NEURL1BA8MQ27 555 aa13.18□□□□□ -0.3
CLK3-205ENST00000561673 C6orf229H3BNL8 230 aa13.18□□□□□ -0.3
CLK3-205ENST00000561673 RIMBP2O15034 1052 aa13.18□□□□□ -0.3
CLK3-205ENST00000561673 GMPSP49915 693 aaPredicted RBP13.18□□□□□ -0.3
CLK3-205ENST00000561673 CIAPIN1Q6FI81 312 aa13.18□□□□□ -0.3
CLK3-205ENST00000561673 GPRC5DQ9NZD1 345 aa13.18□□□□□ -0.3
CLK3-205ENST00000561673 CDHR2Q9BYE9 1310 aa13.17□□□□□ -0.3
CLK3-205ENST00000561673 LTBP1Q14766 1721 aa13.17□□□□□ -0.3
CLK3-205ENST00000561673 DUOX1Q9NRD9 1551 aa13.17□□□□□ -0.3
CLK3-205ENST00000561673 FKBP5Q13451 457 aaPredicted RBP13.17□□□□□ -0.3
CLK3-205ENST00000561673 TNIP1Q15025 636 aa13.17□□□□□ -0.3
CLK3-205ENST00000561673 USP50Q70EL3 339 aaPredicted RBP13.17□□□□□ -0.3
CLK3-205ENST00000561673 TBC1D16Q8TBP0 767 aa13.17□□□□□ -0.3
CLK3-205ENST00000561673 DBNDD1Q9H9R9 158 aa13.17□□□□□ -0.3
CLK3-205ENST00000561673 ADARB2Q9NS39 739 aaKnown RBP13.17□□□□□ -0.3
CLK3-205ENST00000561673 PODXL2Q9NZ53 605 aa13.17□□□□□ -0.3
CLK3-205ENST00000561673 TMEM88BA6NKF7 163 aa13.16□□□□□ -0.3
CLK3-205ENST00000561673 H7C1W4 665 aa13.16□□□□□ -0.3
CLK3-205ENST00000561673 CTSWP56202 376 aa13.16□□□□□ -0.3
CLK3-205ENST00000561673 TTLL11Q8NHH1 800 aa13.16□□□□□ -0.3
CLK3-205ENST00000561673 GPR101Q96P66 508 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms