RNA–Protein interactions for RNA: ENST00000561348.1

HERC1-212, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-212ENST00000561348 CCDC152Q4G0S7 254 aa12.84□□□□□ -0.35
HERC1-212ENST00000561348 RTKN2Q8IZC4 609 aa12.84□□□□□ -0.35
HERC1-212ENST00000561348 LINS1Q8NG48 757 aa12.84□□□□□ -0.35
HERC1-212ENST00000561348 SEC31BQ9NQW1 1179 aa12.84□□□□□ -0.35
HERC1-212ENST00000561348 C9orf78Q9NZ63 289 aaPredicted RBP12.84□□□□□ -0.35
HERC1-212ENST00000561348 LAMB2P55268 1798 aa12.84□□□□□ -0.35
HERC1-212ENST00000561348 FKBP4Q02790 459 aaKnown RBP eCLIP12.83□□□□□ -0.36
HERC1-212ENST00000561348 GRAPQ13588 217 aa12.83□□□□□ -0.36
HERC1-212ENST00000561348 GRAPLQ8TC17 118 aaPredicted RBP12.83□□□□□ -0.36
HERC1-212ENST00000561348 C7orf43Q8WVR3 580 aa12.83□□□□□ -0.36
HERC1-212ENST00000561348 CELF1Q92879 486 aaKnown RBP12.83□□□□□ -0.36
HERC1-212ENST00000561348 DDX60Q8IY21 1712 aaKnown RBP12.82□□□□□ -0.36
HERC1-212ENST00000561348 RIC1Q4ADV7 1423 aa12.82□□□□□ -0.36
HERC1-212ENST00000561348 BBOX1O75936 387 aa12.82□□□□□ -0.36
HERC1-212ENST00000561348 DPP8Q6V1X1 898 aaPredicted RBP12.82□□□□□ -0.36
HERC1-212ENST00000561348 TRMT2AQ8IZ69 625 aaKnown RBP12.82□□□□□ -0.36
HERC1-212ENST00000561348 FRAT1Q92837 279 aaPredicted RBP12.82□□□□□ -0.36
HERC1-212ENST00000561348 YTHDC1Q96MU7 727 aaKnown RBP12.82□□□□□ -0.36
HERC1-212ENST00000561348 SRCIN1Q9C0H9 1055 aa12.82□□□□□ -0.36
HERC1-212ENST00000561348 NOB1Q9ULX3 412 aaKnown RBP12.82□□□□□ -0.36
HERC1-212ENST00000561348 NSFL1CQ9UNZ2 370 aaKnown RBP12.82□□□□□ -0.36
HERC1-212ENST00000561348 SBF1O95248 1867 aa12.82□□□□□ -0.36
HERC1-212ENST00000561348 CTSWP56202 376 aa12.81□□□□□ -0.36
HERC1-212ENST00000561348 SF3B3Q15393 1217 aaKnown RBP12.81□□□□□ -0.36
HERC1-212ENST00000561348 ALDH1L2Q3SY69 923 aa12.81□□□□□ -0.36
HERC1-212ENST00000561348 BEND3Q5T5X7 828 aa12.81□□□□□ -0.36
HERC1-212ENST00000561348 CC2D2BQ6DHV5 1058 aa12.81□□□□□ -0.36
HERC1-212ENST00000561348 DPY19L2Q6NUT2 758 aa12.81□□□□□ -0.36
HERC1-212ENST00000561348 LARGE2Q8N3Y3 721 aa12.81□□□□□ -0.36
HERC1-212ENST00000561348 MPNDQ8N594 471 aa12.81□□□□□ -0.36
HERC1-212ENST00000561348 ATP6V0A2Q9Y487 856 aa12.81□□□□□ -0.36
HERC1-212ENST00000561348 KDM2BQ8NHM5 1336 aa12.81□□□□□ -0.36
HERC1-212ENST00000561348 C6orf229H3BNL8 230 aa12.8□□□□□ -0.36
HERC1-212ENST00000561348 H7C1W4 665 aa12.8□□□□□ -0.36
HERC1-212ENST00000561348 IARSP41252 1262 aaKnown RBP12.8□□□□□ -0.36
HERC1-212ENST00000561348 RPS8P62241 208 aaKnown RBP12.8□□□□□ -0.36
HERC1-212ENST00000561348 ANKRD18AQ8IVF6 992 aa12.8□□□□□ -0.36
HERC1-212ENST00000561348 SP8Q8IXZ3 490 aa12.8□□□□□ -0.36
HERC1-212ENST00000561348 C16orf71Q8IYS4 520 aaPredicted RBP12.8□□□□□ -0.36
HERC1-212ENST00000561348 JDP2Q8WYK2 163 aa12.8□□□□□ -0.36
HERC1-212ENST00000561348 GREM2Q9H772 168 aa12.8□□□□□ -0.36
HERC1-212ENST00000561348 RRAGCQ9HB90 399 aa12.8□□□□□ -0.36
HERC1-212ENST00000561348 NMRK2Q9NPI5 230 aa12.8□□□□□ -0.36
HERC1-212ENST00000561348 ANKIB1Q9P2G1 1089 aa12.8□□□□□ -0.36
HERC1-212ENST00000561348 CDHR2Q9BYE9 1310 aa12.8□□□□□ -0.36
HERC1-212ENST00000561348 FER1L6Q2WGJ9 1857 aa12.8□□□□□ -0.36
HERC1-212ENST00000561348 RIMBP2O15034 1052 aa12.79□□□□□ -0.36
HERC1-212ENST00000561348 PPIP5K2O43314 1243 aa12.79□□□□□ -0.36
HERC1-212ENST00000561348 AOC3Q16853 763 aa12.79□□□□□ -0.36
HERC1-212ENST00000561348 GJA3Q9Y6H8 435 aa12.79□□□□□ -0.36
HERC1-212ENST00000561348 PTPRCP08575 1304 aa12.79□□□□□ -0.36
HERC1-212ENST00000561348 G3V3G9 751 aa12.78□□□□□ -0.36
HERC1-212ENST00000561348 GRM8O00222 908 aa12.78□□□□□ -0.36
HERC1-212ENST00000561348 BCAR3O75815 825 aa12.78□□□□□ -0.36
HERC1-212ENST00000561348 CT47B1P0C2W7 299 aaPredicted RBP12.78□□□□□ -0.36
HERC1-212ENST00000561348 RARSP54136 660 aaKnown RBP12.78□□□□□ -0.36
HERC1-212ENST00000561348 TAF7LQ5H9L4 462 aa12.78□□□□□ -0.36
HERC1-212ENST00000561348 DCAF8Q5TAQ9 597 aa12.78□□□□□ -0.36
HERC1-212ENST00000561348 TTLL11Q8NHH1 800 aa12.78□□□□□ -0.36
HERC1-212ENST00000561348 GPR101Q96P66 508 aaPredicted RBP12.78□□□□□ -0.36
HERC1-212ENST00000561348 CDC5LQ99459 802 aaKnown RBP12.78□□□□□ -0.36
HERC1-212ENST00000561348 ZBED9Q6R2W3 1325 aa12.78□□□□□ -0.36
HERC1-212ENST00000561348 LTBP3Q9NS15 1303 aa12.78□□□□□ -0.36
HERC1-212ENST00000561348 TIAM2Q8IVF5 1701 aa12.77□□□□□ -0.36
HERC1-212ENST00000561348 ALDH1L1O75891 902 aa12.77□□□□□ -0.37
HERC1-212ENST00000561348 DDNO94850 711 aaPredicted RBP12.77□□□□□ -0.37
HERC1-212ENST00000561348 ITGA6P23229 1130 aa12.77□□□□□ -0.37
HERC1-212ENST00000561348 IGHMBP2P38935 993 aaKnown RBP12.77□□□□□ -0.37
HERC1-212ENST00000561348 GPSM2P81274 684 aa12.77□□□□□ -0.37
HERC1-212ENST00000561348 FAM161AQ3B820 660 aa12.77□□□□□ -0.37
HERC1-212ENST00000561348 NIM1KQ8IY84 436 aa12.77□□□□□ -0.37
HERC1-212ENST00000561348 SUPT20HQ8NEM7 779 aa12.77□□□□□ -0.37
HERC1-212ENST00000561348 CLUAP1Q96AJ1 413 aa12.77□□□□□ -0.37
HERC1-212ENST00000561348 PSMD1Q99460 953 aa12.77□□□□□ -0.37
HERC1-212ENST00000561348 MPHOSPH8Q99549 860 aa12.77□□□□□ -0.37
HERC1-212ENST00000561348 GLTPD2A6NH11 291 aa12.76□□□□□ -0.37
HERC1-212ENST00000561348 UFL1O94874 794 aa12.76□□□□□ -0.37
HERC1-212ENST00000561348 NBPF7P0C2Y1 421 aaPredicted RBP12.76□□□□□ -0.37
HERC1-212ENST00000561348 EIF6P56537 245 aaKnown RBP12.76□□□□□ -0.37
HERC1-212ENST00000561348 GRIPAP1Q4V328 841 aa12.76□□□□□ -0.37
HERC1-212ENST00000561348 LMBR1LQ6UX01 489 aa12.76□□□□□ -0.37
HERC1-212ENST00000561348 TMC4Q7Z404 712 aa12.76□□□□□ -0.37
HERC1-212ENST00000561348 API5Q9BZZ5 524 aaKnown RBP12.76□□□□□ -0.37
HERC1-212ENST00000561348 ANKRD18BA2A2Z9 1011 aa12.75□□□□□ -0.37
HERC1-212ENST00000561348 IPO8O15397 1037 aaKnown RBP12.75□□□□□ -0.37
HERC1-212ENST00000561348 PLIN1O60240 522 aa12.75□□□□□ -0.37
HERC1-212ENST00000561348 MYH3P11055 1940 aa12.75□□□□□ -0.37
HERC1-212ENST00000561348 IFIT5Q13325 482 aaKnown RBP12.75□□□□□ -0.37
HERC1-212ENST00000561348 DOK7Q18PE1 504 aa12.75□□□□□ -0.37
HERC1-212ENST00000561348 WASHC4Q2M389 1173 aa12.75□□□□□ -0.37
HERC1-212ENST00000561348 CCDC57Q2TAC2 916 aa12.75□□□□□ -0.37
HERC1-212ENST00000561348 EPHA10Q5JZY3 1008 aa12.75□□□□□ -0.37
HERC1-212ENST00000561348 SUCLG2Q96I99 432 aa12.75□□□□□ -0.37
HERC1-212ENST00000561348 SPEF2Q9C093 1822 aa12.75□□□□□ -0.37
HERC1-212ENST00000561348 COL4A1P02462 1669 aa12.74□□□□□ -0.37
HERC1-212ENST00000561348 KIF16BQ96L93 1317 aa12.74□□□□□ -0.37
HERC1-212ENST00000561348 ZNF541Q9H0D2 1346 aa12.74□□□□□ -0.37
HERC1-212ENST00000561348 CASP7P55210 303 aa12.74□□□□□ -0.37
HERC1-212ENST00000561348 ZNF594Q96JF6 807 aaPredicted RBP12.74□□□□□ -0.37
HERC1-212ENST00000561348 GGA1Q9UJY5 639 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms