RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 KIF3CO14782 793 aa16.52■□□□□ 0.24
CTDSPL2-209ENST00000560620 PDE8AO60658 829 aa16.52■□□□□ 0.24
CTDSPL2-209ENST00000560620 IARSP41252 1262 aaKnown RBP16.52■□□□□ 0.24
CTDSPL2-209ENST00000560620 SF3B3Q15393 1217 aaKnown RBP16.52■□□□□ 0.24
CTDSPL2-209ENST00000560620 SLC51AQ86UW1 340 aa16.52■□□□□ 0.24
CTDSPL2-209ENST00000560620 JDP2Q8WYK2 163 aa16.52■□□□□ 0.24
CTDSPL2-209ENST00000560620 CCDC85AQ96PX6 553 aaPredicted RBP16.52■□□□□ 0.24
CTDSPL2-209ENST00000560620 PSMD1Q99460 953 aa16.52■□□□□ 0.24
CTDSPL2-209ENST00000560620 TAF1P21675 1872 aa16.52■□□□□ 0.23
CTDSPL2-209ENST00000560620 F6X3S4 739 aa16.51■□□□□ 0.23
CTDSPL2-209ENST00000560620 CCDC152Q4G0S7 254 aa16.51■□□□□ 0.23
CTDSPL2-209ENST00000560620 DPP8Q6V1X1 898 aaPredicted RBP16.51■□□□□ 0.23
CTDSPL2-209ENST00000560620 UBE3BQ7Z3V4 1068 aa16.51■□□□□ 0.23
CTDSPL2-209ENST00000560620 SLC4A10Q6U841 1118 aa16.5■□□□□ 0.23
CTDSPL2-209ENST00000560620 SP8Q8IXZ3 490 aa16.5■□□□□ 0.23
CTDSPL2-209ENST00000560620 LARGE2Q8N3Y3 721 aa16.5■□□□□ 0.23
CTDSPL2-209ENST00000560620 MPNDQ8N594 471 aa16.5■□□□□ 0.23
CTDSPL2-209ENST00000560620 LINS1Q8NG48 757 aa16.5■□□□□ 0.23
CTDSPL2-209ENST00000560620 CELF1Q92879 486 aaKnown RBP16.5■□□□□ 0.23
CTDSPL2-209ENST00000560620 GCKRQ14397 625 aa16.49■□□□□ 0.23
CTDSPL2-209ENST00000560620 TMC4Q7Z404 712 aa16.49■□□□□ 0.23
CTDSPL2-209ENST00000560620 SUPT20HQ8NEM7 779 aa16.49■□□□□ 0.23
CTDSPL2-209ENST00000560620 BCL2L13Q9BXK5 485 aa16.49■□□□□ 0.23
CTDSPL2-209ENST00000560620 CDHR2Q9BYE9 1310 aa16.48■□□□□ 0.23
CTDSPL2-209ENST00000560620 PPIP5K2O43314 1243 aa16.48■□□□□ 0.23
CTDSPL2-209ENST00000560620 TOMM70O94826 608 aa16.48■□□□□ 0.23
CTDSPL2-209ENST00000560620 DDNO94850 711 aaPredicted RBP16.48■□□□□ 0.23
CTDSPL2-209ENST00000560620 VEGFAP15692 232 aaPredicted RBP16.48■□□□□ 0.23
CTDSPL2-209ENST00000560620 RPS8P62241 208 aaKnown RBP16.48■□□□□ 0.23
CTDSPL2-209ENST00000560620 HNRNPUQ00839 825 aaKnown RBP eCLIP16.48■□□□□ 0.23
CTDSPL2-209ENST00000560620 SEC31BQ9NQW1 1179 aa16.48■□□□□ 0.23
CTDSPL2-209ENST00000560620 NSFL1CQ9UNZ2 370 aaKnown RBP16.48■□□□□ 0.23
CTDSPL2-209ENST00000560620 CTSWP56202 376 aa16.47■□□□□ 0.23
CTDSPL2-209ENST00000560620 AOC3Q16853 763 aa16.47■□□□□ 0.23
CTDSPL2-209ENST00000560620 NIM1KQ8IY84 436 aa16.47■□□□□ 0.23
CTDSPL2-209ENST00000560620 H7C1W4 665 aa16.46■□□□□ 0.23
CTDSPL2-209ENST00000560620 EIF6P56537 245 aaKnown RBP16.46■□□□□ 0.23
CTDSPL2-209ENST00000560620 ANKRD18AQ8IVF6 992 aa16.46■□□□□ 0.23
CTDSPL2-209ENST00000560620 SMC4Q9NTJ3 1288 aa16.46■□□□□ 0.23
CTDSPL2-209ENST00000560620 ZNF541Q9H0D2 1346 aa16.45■□□□□ 0.22
CTDSPL2-209ENST00000560620 SNED1Q8TER0 1413 aa16.45■□□□□ 0.22
CTDSPL2-209ENST00000560620 C6orf229H3BNL8 230 aa16.45■□□□□ 0.22
CTDSPL2-209ENST00000560620 BEND3Q5T5X7 828 aa16.45■□□□□ 0.22
CTDSPL2-209ENST00000560620 MRPL50Q8N5N7 158 aaKnown RBP16.45■□□□□ 0.22
CTDSPL2-209ENST00000560620 SSH1Q8WYL5 1049 aa16.45■□□□□ 0.22
CTDSPL2-209ENST00000560620 CDC5LQ99459 802 aaKnown RBP16.45■□□□□ 0.22
CTDSPL2-209ENST00000560620 C9orf78Q9NZ63 289 aaPredicted RBP16.45■□□□□ 0.22
CTDSPL2-209ENST00000560620 ANKIB1Q9P2G1 1089 aa16.45■□□□□ 0.22
CTDSPL2-209ENST00000560620 GJA3Q9Y6H8 435 aa16.45■□□□□ 0.22
CTDSPL2-209ENST00000560620 TTLL11Q8NHH1 800 aa16.44■□□□□ 0.22
CTDSPL2-209ENST00000560620 SRCIN1Q9C0H9 1055 aa16.44■□□□□ 0.22
CTDSPL2-209ENST00000560620 MYH3P11055 1940 aa16.44■□□□□ 0.22
CTDSPL2-209ENST00000560620 FZD9O00144 591 aa16.43■□□□□ 0.22
CTDSPL2-209ENST00000560620 GPSM2P81274 684 aa16.43■□□□□ 0.22
CTDSPL2-209ENST00000560620 TRMT2AQ8IZ69 625 aaKnown RBP16.43■□□□□ 0.22
CTDSPL2-209ENST00000560620 RBM46Q8TBY0 533 aaKnown RBP16.43■□□□□ 0.22
CTDSPL2-209ENST00000560620 RTFDC1Q9BY42 306 aaPredicted RBP16.43■□□□□ 0.22
CTDSPL2-209ENST00000560620 VPS33BQ9H267 617 aa16.43■□□□□ 0.22
CTDSPL2-209ENST00000560620 GREM2Q9H772 168 aa16.43■□□□□ 0.22
CTDSPL2-209ENST00000560620 CHMP3Q9Y3E7 222 aa16.43■□□□□ 0.22
CTDSPL2-209ENST00000560620 PTPRCP08575 1304 aa16.43■□□□□ 0.22
CTDSPL2-209ENST00000560620 IQCA1LA6NCM1 817 aa16.42■□□□□ 0.22
CTDSPL2-209ENST00000560620 WASHC4Q2M389 1173 aa16.42■□□□□ 0.22
CTDSPL2-209ENST00000560620 ALDH1L2Q3SY69 923 aa16.42■□□□□ 0.22
CTDSPL2-209ENST00000560620 GPC2Q8N158 579 aa16.42■□□□□ 0.22
CTDSPL2-209ENST00000560620 WDR90Q96KV7 1748 aa16.42■□□□□ 0.22
CTDSPL2-209ENST00000560620 COL4A1P02462 1669 aa16.41■□□□□ 0.22
CTDSPL2-209ENST00000560620 G3V3G9 751 aa16.41■□□□□ 0.22
CTDSPL2-209ENST00000560620 GRM8O00222 908 aa16.41■□□□□ 0.22
CTDSPL2-209ENST00000560620 RIMBP2O15034 1052 aa16.41■□□□□ 0.22
CTDSPL2-209ENST00000560620 ALDH1L1O75891 902 aa16.41■□□□□ 0.22
CTDSPL2-209ENST00000560620 CT47B1P0C2W7 299 aaPredicted RBP16.41■□□□□ 0.22
CTDSPL2-209ENST00000560620 IGHMBP2P38935 993 aaKnown RBP16.41■□□□□ 0.22
CTDSPL2-209ENST00000560620 KIAA2012Q0VF49 1180 aa16.41■□□□□ 0.22
CTDSPL2-209ENST00000560620 DCAF8Q5TAQ9 597 aa16.41■□□□□ 0.22
CTDSPL2-209ENST00000560620 EYA3Q99504 573 aa16.41■□□□□ 0.22
CTDSPL2-209ENST00000560620 LRRC37AA6NMS7 1700 aa16.41■□□□□ 0.22
CTDSPL2-209ENST00000560620 COL4A5P29400 1685 aa16.4■□□□□ 0.22
CTDSPL2-209ENST00000560620 POTECB2RU33 542 aa16.4■□□□□ 0.22
CTDSPL2-209ENST00000560620 UFL1O94874 794 aa16.4■□□□□ 0.22
CTDSPL2-209ENST00000560620 ITGA6P23229 1130 aa16.4■□□□□ 0.22
CTDSPL2-209ENST00000560620 CASP7P55210 303 aa16.4■□□□□ 0.22
CTDSPL2-209ENST00000560620 SMC1BQ8NDV3 1235 aa16.4■□□□□ 0.22
CTDSPL2-209ENST00000560620 MPHOSPH8Q99549 860 aa16.4■□□□□ 0.22
CTDSPL2-209ENST00000560620 PLA2G12BQ9BX93 195 aa16.4■□□□□ 0.22
CTDSPL2-209ENST00000560620 ZNRF3Q9ULT6 936 aa16.4■□□□□ 0.22
CTDSPL2-209ENST00000560620 HSPA6P17066 643 aa16.39■□□□□ 0.21
CTDSPL2-209ENST00000560620 LMOD1P29536 600 aaPredicted RBP16.39■□□□□ 0.21
CTDSPL2-209ENST00000560620 FAM161AQ3B820 660 aa16.39■□□□□ 0.21
CTDSPL2-209ENST00000560620 EAPPQ56P03 285 aaPredicted RBP16.39■□□□□ 0.21
CTDSPL2-209ENST00000560620 TBC1D16Q8TBP0 767 aa16.39■□□□□ 0.21
CTDSPL2-209ENST00000560620 L3MBTL3Q96JM7 780 aaPredicted RBP16.39■□□□□ 0.21
CTDSPL2-209ENST00000560620 GPR101Q96P66 508 aaPredicted RBP16.39■□□□□ 0.21
CTDSPL2-209ENST00000560620 ZC3H12CQ9C0D7 883 aaKnown RBP16.39■□□□□ 0.21
CTDSPL2-209ENST00000560620 POLLQ9UGP5 575 aa16.39■□□□□ 0.21
CTDSPL2-209ENST00000560620 HACL1Q9UJ83 578 aa16.39■□□□□ 0.21
CTDSPL2-209ENST00000560620 GGA1Q9UJY5 639 aa16.39■□□□□ 0.21
CTDSPL2-209ENST00000560620 SPEF2Q9C093 1822 aa16.39■□□□□ 0.21
CTDSPL2-209ENST00000560620 ANKRD18BA2A2Z9 1011 aa16.38■□□□□ 0.21
CTDSPL2-209ENST00000560620 FSTL1Q12841 308 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 147.2 ms