RNA–Protein interactions for RNA: ENST00000560444.1

PIF1-208, Transcript of PIF1 5'-to-3' DNA helicase, human

TSL 2

Gene PIF1, Length 1,631 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PIF1-208	ENST00000560444	PDE8A	O60658	829 aa		28.87	■■■□□ 2.21
PIF1-208	ENST00000560444	IL27	Q8NEV9	243 aa		28.87	■■■□□ 2.21
PIF1-208	ENST00000560444	DIAPH3	Q9NSV4	1193 aa		28.87	■■■□□ 2.21
PIF1-208	ENST00000560444	CNTNAP4	Q9C0A0	1308 aa		28.86	■■■□□ 2.21
PIF1-208	ENST00000560444	NUP98	P52948	1817 aa		28.86	■■■□□ 2.21
PIF1-208	ENST00000560444	CTSW	P56202	376 aa		28.86	■■■□□ 2.21
PIF1-208	ENST00000560444	RC3H1	Q5TC82	1133 aa	Known RBP	28.86	■■■□□ 2.21
PIF1-208	ENST00000560444	TTLL11	Q8NHH1	800 aa		28.86	■■■□□ 2.21
PIF1-208	ENST00000560444	IL17RA	Q96F46	866 aa		28.86	■■■□□ 2.21
PIF1-208	ENST00000560444	UBN2	Q6ZU65	1347 aa		28.86	■■■□□ 2.21
PIF1-208	ENST00000560444	LRRC24	Q50LG9	513 aa		28.85	■■■□□ 2.21
PIF1-208	ENST00000560444	CLEC4G	Q6UXB4	293 aa		28.85	■■■□□ 2.21
PIF1-208	ENST00000560444	LINC00116	Q8NCU8	138 aa		28.85	■■■□□ 2.21
PIF1-208	ENST00000560444	ZNF594	Q96JF6	807 aa	Predicted RBP	28.85	■■■□□ 2.21
PIF1-208	ENST00000560444	BOLA2	Q9H3K6	86 aa		28.85	■■■□□ 2.21
PIF1-208	ENST00000560444	ZNF652	Q9Y2D9	606 aa		28.85	■■■□□ 2.21
PIF1-208	ENST00000560444	HSP90B1	P14625	803 aa	Known RBP	28.84	■■■□□ 2.21
PIF1-208	ENST00000560444	ANTXR1	Q9H6X2	564 aa		28.84	■■■□□ 2.21
PIF1-208	ENST00000560444	CEP126	Q9P2H0	1117 aa		28.84	■■■□□ 2.21
PIF1-208	ENST00000560444	COL5A3	P25940	1745 aa	Predicted RBP	28.84	■■■□□ 2.21
PIF1-208	ENST00000560444	TAF7L	Q5H9L4	462 aa		28.83	■■■□□ 2.21
PIF1-208	ENST00000560444	UTP14A	Q9BVJ6	771 aa	Known RBP	28.83	■■■□□ 2.21
PIF1-208	ENST00000560444	AKAP2	Q9Y2D5	859 aa		28.83	■■■□□ 2.21
PIF1-208	ENST00000560444	KIAA1211	Q6ZU35	1233 aa		28.83	■■■□□ 2.21
PIF1-208	ENST00000560444	SYNE4	Q8N205	404 aa		28.83	■■■□□ 2.21
PIF1-208	ENST00000560444	DBNDD2	Q9BQY9	259 aa		28.83	■■■□□ 2.21
PIF1-208	ENST00000560444	AK9	Q5TCS8	1911 aa		28.83	■■■□□ 2.21
PIF1-208	ENST00000560444	NHS	Q6T4R5	1651 aa		28.82	■■■□□ 2.2
PIF1-208	ENST00000560444	ANKRD18B	A2A2Z9	1011 aa		28.82	■■■□□ 2.2
PIF1-208	ENST00000560444		K7ELQ4	463 aa	Predicted RBP	28.82	■■■□□ 2.2
PIF1-208	ENST00000560444	CWC27	Q6UX04	472 aa	Known RBP	28.82	■■■□□ 2.2
PIF1-208	ENST00000560444	TICAM2	Q86XR7	235 aa		28.82	■■■□□ 2.2
PIF1-208	ENST00000560444	SUSD4	Q5VX71	490 aa		28.81	■■■□□ 2.2
PIF1-208	ENST00000560444	SH3TC1	Q8TE82	1336 aa		28.81	■■■□□ 2.2
PIF1-208	ENST00000560444	PUS3	Q9BZE2	481 aa	Known RBP	28.81	■■■□□ 2.2
PIF1-208	ENST00000560444	ST18	O60284	1047 aa		28.8	■■■□□ 2.2
PIF1-208	ENST00000560444	ITGA6	P23229	1130 aa		28.8	■■■□□ 2.2
PIF1-208	ENST00000560444	FAM196A	Q6ZSG2	479 aa		28.8	■■■□□ 2.2
PIF1-208	ENST00000560444	HAUS7	Q99871	368 aa		28.8	■■■□□ 2.2
PIF1-208	ENST00000560444	NEUROD6	Q96NK8	337 aa		28.8	■■■□□ 2.2
PIF1-208	ENST00000560444	MYH14	Q7Z406	1995 aa	Known RBP	28.79	■■■□□ 2.2
PIF1-208	ENST00000560444	RAD50	Q92878	1312 aa		28.79	■■■□□ 2.2
PIF1-208	ENST00000560444	LSG1	Q9H089	658 aa	Known RBP	28.79	■■■□□ 2.2
PIF1-208	ENST00000560444	IL25	Q9H293	177 aa		28.79	■■■□□ 2.2
PIF1-208	ENST00000560444	SLK	Q9H2G2	1235 aa	Predicted RBP	28.79	■■■□□ 2.2
PIF1-208	ENST00000560444	GREM2	Q9H772	168 aa		28.79	■■■□□ 2.2
PIF1-208	ENST00000560444	RFX7	Q2KHR2	1363 aa		28.78	■■■□□ 2.2
PIF1-208	ENST00000560444	HSPA4	P34932	840 aa		28.78	■■■□□ 2.2
PIF1-208	ENST00000560444	SNRK	Q9NRH2	765 aa		28.78	■■■□□ 2.2
PIF1-208	ENST00000560444	SBF2	Q86WG5	1849 aa		28.78	■■■□□ 2.2
PIF1-208	ENST00000560444	ZNF609	O15014	1411 aa		28.78	■■■□□ 2.2
PIF1-208	ENST00000560444	BTAF1	O14981	1849 aa		28.77	■■■□□ 2.2
PIF1-208	ENST00000560444	TIMM10	P62072	90 aa		28.77	■■■□□ 2.2
PIF1-208	ENST00000560444	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	28.77	■■■□□ 2.2
PIF1-208	ENST00000560444	FSD1	Q9BTV5	496 aa		28.77	■■■□□ 2.2
PIF1-208	ENST00000560444	NIP7	Q9Y221	180 aa	Known RBP eCLIP	28.77	■■■□□ 2.2
PIF1-208	ENST00000560444	RIPOR2	Q9Y4F9	1068 aa		28.77	■■■□□ 2.2
PIF1-208	ENST00000560444		A0A1B0GUL7	405 aa		28.76	■■■□□ 2.2
PIF1-208	ENST00000560444	RPS6KA4	O75676	772 aa		28.76	■■■□□ 2.2
PIF1-208	ENST00000560444	CD2BP2	O95400	341 aa	Known RBP	28.76	■■■□□ 2.2
PIF1-208	ENST00000560444	LDHAL6A	Q6ZMR3	332 aa		28.76	■■■□□ 2.19
PIF1-208	ENST00000560444	CCDC85A	Q96PX6	553 aa	Predicted RBP	28.76	■■■□□ 2.19
PIF1-208	ENST00000560444	NBR1	Q14596	966 aa		28.75	■■■□□ 2.19
PIF1-208	ENST00000560444	BCL11B	Q9C0K0	894 aa	Predicted RBP	28.75	■■■□□ 2.19
PIF1-208	ENST00000560444	CCNL1	Q9UK58	526 aa	Predicted RBP	28.75	■■■□□ 2.19
PIF1-208	ENST00000560444	ILDR1	Q86SU0	546 aa	Predicted RBP	28.74	■■■□□ 2.19
PIF1-208	ENST00000560444	NTSR2	O95665	410 aa		28.73	■■■□□ 2.19
PIF1-208	ENST00000560444	CHMP5	Q9NZZ3	219 aa		28.73	■■■□□ 2.19
PIF1-208	ENST00000560444	MCM2	P49736	904 aa		28.72	■■■□□ 2.19
PIF1-208	ENST00000560444	TRIM37	O94972	964 aa		28.72	■■■□□ 2.19
PIF1-208	ENST00000560444	NMI	Q13287	307 aa	Predicted RBP	28.72	■■■□□ 2.19
PIF1-208	ENST00000560444	CCDC158	Q5M9N0	1113 aa		28.72	■■■□□ 2.19
PIF1-208	ENST00000560444	SPRYD3	Q8NCJ5	442 aa		28.72	■■■□□ 2.19
PIF1-208	ENST00000560444	CNNM1	Q9NRU3	951 aa		28.72	■■■□□ 2.19
PIF1-208	ENST00000560444	KCNQ4	P56696	695 aa		28.71	■■■□□ 2.19
PIF1-208	ENST00000560444	METTL24	Q5JXM2	366 aa		28.71	■■■□□ 2.19
PIF1-208	ENST00000560444	NARF	Q9UHQ1	456 aa		28.71	■■■□□ 2.19
PIF1-208	ENST00000560444	PALD1	Q9ULE6	856 aa		28.71	■■■□□ 2.19
PIF1-208	ENST00000560444	RTL9	Q8NET4	1388 aa		28.7	■■■□□ 2.19
PIF1-208	ENST00000560444	DNAJC2	Q99543	621 aa	Known RBP	28.7	■■■□□ 2.19
PIF1-208	ENST00000560444	BCOR	Q6W2J9	1755 aa		28.7	■■■□□ 2.18
PIF1-208	ENST00000560444	HCLS1	P14317	486 aa	Predicted RBP	28.69	■■■□□ 2.18
PIF1-208	ENST00000560444	DDIT3	P35638	169 aa		28.69	■■■□□ 2.18
PIF1-208	ENST00000560444	NFKBIB	Q15653	356 aa		28.69	■■■□□ 2.18
PIF1-208	ENST00000560444	CCDC152	Q4G0S7	254 aa		28.69	■■■□□ 2.18
PIF1-208	ENST00000560444	KBTBD3	Q8NAB2	608 aa		28.69	■■■□□ 2.18
PIF1-208	ENST00000560444	FAM227B	Q96M60	508 aa		28.69	■■■□□ 2.18
PIF1-208	ENST00000560444	CIZ1	Q9ULV3	898 aa	Predicted RBP	28.69	■■■□□ 2.18
PIF1-208	ENST00000560444	MYH3	P11055	1940 aa		28.69	■■■□□ 2.18
PIF1-208	ENST00000560444	HSP90AA1	P07900	732 aa	Known RBP	28.69	■■■□□ 2.18
PIF1-208	ENST00000560444	NEK4	P51957	841 aa		28.69	■■■□□ 2.18
PIF1-208	ENST00000560444	XAGE2	Q96GT9	111 aa		28.69	■■■□□ 2.18
PIF1-208	ENST00000560444	RTCB	Q9Y3I0	505 aa	Known RBP	28.69	■■■□□ 2.18
PIF1-208	ENST00000560444	IFIT1	P09914	478 aa	Known RBP	28.68	■■■□□ 2.18
PIF1-208	ENST00000560444	GORAB	Q5T7V8	394 aa		28.68	■■■□□ 2.18
PIF1-208	ENST00000560444	MROH5	Q6ZUA9	1318 aa		28.68	■■■□□ 2.18
PIF1-208	ENST00000560444	ABCC12	Q96J65	1359 aa		28.67	■■■□□ 2.18
PIF1-208	ENST00000560444	KCNB2	Q92953	911 aa		28.67	■■■□□ 2.18
PIF1-208	ENST00000560444	PAG1	Q9NWQ8	432 aa		28.67	■■■□□ 2.18
PIF1-208	ENST00000560444	CCDC171	Q6TFL3	1326 aa		28.67	■■■□□ 2.18

Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms