RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 SLX4Q8IY92 1834 aa27.45■■□□□ 1.98
SNX1-210ENST00000560260 HOXA10P31260 410 aaPredicted RBP27.44■■□□□ 1.98
SNX1-210ENST00000560260 ITPRIPQ8IWB1 547 aa27.44■■□□□ 1.98
SNX1-210ENST00000560260 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.44■■□□□ 1.98
SNX1-210ENST00000560260 SLC51AQ86UW1 340 aa27.43■■□□□ 1.98
SNX1-210ENST00000560260 TTLL11Q8NHH1 800 aa27.43■■□□□ 1.98
SNX1-210ENST00000560260 RPGRQ92834 1020 aaKnown RBP27.43■■□□□ 1.98
SNX1-210ENST00000560260 PIM2Q9P1W9 311 aa27.43■■□□□ 1.98
SNX1-210ENST00000560260 HSP90B1P14625 803 aaKnown RBP27.42■■□□□ 1.98
SNX1-210ENST00000560260 ARFGEF1Q9Y6D6 1849 aa27.42■■□□□ 1.98
SNX1-210ENST00000560260 YBX3P16989 372 aaKnown RBP eCLIP27.41■■□□□ 1.98
SNX1-210ENST00000560260 PDE3AQ14432 1141 aa27.41■■□□□ 1.98
SNX1-210ENST00000560260 ANKRD44Q8N8A2 993 aa27.41■■□□□ 1.98
SNX1-210ENST00000560260 COG6Q9Y2V7 657 aa27.41■■□□□ 1.98
SNX1-210ENST00000560260 CSF1RP07333 972 aa27.41■■□□□ 1.98
SNX1-210ENST00000560260 UBTFL1P0CB47 393 aaPredicted RBP27.41■■□□□ 1.98
SNX1-210ENST00000560260 MS4A1P11836 297 aa27.41■■□□□ 1.98
SNX1-210ENST00000560260 PRPF40BQ6NWY9 871 aaKnown RBP27.41■■□□□ 1.98
SNX1-210ENST00000560260 TTLL6Q8N841 843 aa27.41■■□□□ 1.98
SNX1-210ENST00000560260 RBM17Q96I25 401 aaKnown RBP27.41■■□□□ 1.98
SNX1-210ENST00000560260 CRAMP1Q96RY5 1269 aa27.41■■□□□ 1.98
SNX1-210ENST00000560260 BICC1Q9H694 974 aaKnown RBP27.41■■□□□ 1.98
SNX1-210ENST00000560260 GREM2Q9H772 168 aa27.41■■□□□ 1.98
SNX1-210ENST00000560260 SEC31BQ9NQW1 1179 aa27.41■■□□□ 1.98
SNX1-210ENST00000560260 MVPQ14764 893 aaKnown RBP27.4■■□□□ 1.98
SNX1-210ENST00000560260 FAM161AQ3B820 660 aa27.4■■□□□ 1.98
SNX1-210ENST00000560260 DALRD3Q5D0E6 543 aaKnown RBP27.4■■□□□ 1.98
SNX1-210ENST00000560260 BCS1LQ9Y276 419 aa27.4■■□□□ 1.98
SNX1-210ENST00000560260 RTL9Q8NET4 1388 aa27.39■■□□□ 1.98
SNX1-210ENST00000560260 CCDC152Q4G0S7 254 aa27.39■■□□□ 1.97
SNX1-210ENST00000560260 LMBR1LQ6UX01 489 aa27.39■■□□□ 1.97
SNX1-210ENST00000560260 CELF1Q92879 486 aaKnown RBP27.39■■□□□ 1.97
SNX1-210ENST00000560260 CNKSR1Q969H4 720 aa27.39■■□□□ 1.97
SNX1-210ENST00000560260 ZBTB7BO15156 539 aaPredicted RBP27.38■■□□□ 1.97
SNX1-210ENST00000560260 RABL6Q3YEC7 729 aaPredicted RBP27.38■■□□□ 1.97
SNX1-210ENST00000560260 DDX46Q7L014 1031 aaKnown RBP27.38■■□□□ 1.97
SNX1-210ENST00000560260 PELP1Q8IZL8 1130 aaKnown RBP27.38■■□□□ 1.97
SNX1-210ENST00000560260 SUPT16HQ9Y5B9 1047 aaKnown RBP27.38■■□□□ 1.97
SNX1-210ENST00000560260 LRRFIP2Q9Y608 721 aaKnown RBP27.38■■□□□ 1.97
SNX1-210ENST00000560260 GRAPQ13588 217 aa27.37■■□□□ 1.97
SNX1-210ENST00000560260 GRAPLQ8TC17 118 aaPredicted RBP27.37■■□□□ 1.97
SNX1-210ENST00000560260 LRRC37AA6NMS7 1700 aa27.36■■□□□ 1.97
SNX1-210ENST00000560260 SPEF2Q9C093 1822 aa27.36■■□□□ 1.97
SNX1-210ENST00000560260 GNAI3P08754 354 aa27.36■■□□□ 1.97
SNX1-210ENST00000560260 ALDH1B1P30837 517 aa27.35■■□□□ 1.97
SNX1-210ENST00000560260 OLFM4Q6UX06 510 aa27.35■■□□□ 1.97
SNX1-210ENST00000560260 C7orf43Q8WVR3 580 aa27.35■■□□□ 1.97
SNX1-210ENST00000560260 PPEF1O14829 653 aaPredicted RBP27.34■■□□□ 1.97
SNX1-210ENST00000560260 C1orf115Q9H7X2 142 aa27.34■■□□□ 1.97
SNX1-210ENST00000560260 ZNF219Q9P2Y4 722 aaPredicted RBP27.34■■□□□ 1.97
SNX1-210ENST00000560260 SNED1Q8TER0 1413 aa27.34■■□□□ 1.97
SNX1-210ENST00000560260 UTRNP46939 3433 aa27.33■■□□□ 1.97
SNX1-210ENST00000560260 ITGA6P23229 1130 aa27.33■■□□□ 1.97
SNX1-210ENST00000560260 CHMP3Q9Y3E7 222 aa27.33■■□□□ 1.97
SNX1-210ENST00000560260 C21orf2O43822 256 aa27.32■■□□□ 1.96
SNX1-210ENST00000560260 DDX19BQ9UMR2 479 aa27.32■■□□□ 1.96
SNX1-210ENST00000560260 GPR162Q16538 588 aa27.31■■□□□ 1.96
SNX1-210ENST00000560260 GNAI2P04899 355 aa27.3■■□□□ 1.96
SNX1-210ENST00000560260 RPS8P62241 208 aaKnown RBP27.29■■□□□ 1.96
SNX1-210ENST00000560260 ANKRD18BA2A2Z9 1011 aa27.28■■□□□ 1.96
SNX1-210ENST00000560260 BBOX1O75936 387 aa27.28■■□□□ 1.96
SNX1-210ENST00000560260 ZNF594Q96JF6 807 aaPredicted RBP27.28■■□□□ 1.96
SNX1-210ENST00000560260 CRBNQ96SW2 442 aa27.28■■□□□ 1.96
SNX1-210ENST00000560260 CDC5LQ99459 802 aaKnown RBP27.28■■□□□ 1.96
SNX1-210ENST00000560260 ZBTB40Q9NUA8 1239 aa27.28■■□□□ 1.96
SNX1-210ENST00000560260 ATP6V0A2Q9Y487 856 aa27.28■■□□□ 1.96
SNX1-210ENST00000560260 FER1L6Q2WGJ9 1857 aa27.28■■□□□ 1.96
SNX1-210ENST00000560260 RFX5P48382 616 aaPredicted RBP27.27■■□□□ 1.96
SNX1-210ENST00000560260 IFIT5Q13325 482 aaKnown RBP27.27■■□□□ 1.96
SNX1-210ENST00000560260 ANKRD18AQ8IVF6 992 aa27.27■■□□□ 1.96
SNX1-210ENST00000560260 LTBP1Q14766 1721 aa27.27■■□□□ 1.96
SNX1-210ENST00000560260 MTX1Q13505 466 aa27.26■■□□□ 1.95
SNX1-210ENST00000560260 HDAC5Q9UQL6 1122 aa27.26■■□□□ 1.95
SNX1-210ENST00000560260 DUOX1Q9NRD9 1551 aa27.26■■□□□ 1.95
SNX1-210ENST00000560260 A0A1B0GUL6 1792 aa27.25■■□□□ 1.95
SNX1-210ENST00000560260 CCDC57Q2TAC2 916 aa27.25■■□□□ 1.95
SNX1-210ENST00000560260 NFKBIEO00221 500 aa27.24■■□□□ 1.95
SNX1-210ENST00000560260 CCDC93Q567U6 631 aa27.24■■□□□ 1.95
SNX1-210ENST00000560260 SP8Q8IXZ3 490 aa27.24■■□□□ 1.95
SNX1-210ENST00000560260 KLHDC4Q8TBB5 520 aa27.24■■□□□ 1.95
SNX1-210ENST00000560260 PNMA6EA0A0J9YXQ4 647 aa27.23■■□□□ 1.95
SNX1-210ENST00000560260 TMC4Q7Z404 712 aa27.23■■□□□ 1.95
SNX1-210ENST00000560260 IGHMBP2P38935 993 aaKnown RBP27.22■■□□□ 1.95
SNX1-210ENST00000560260 RASSF7Q02833 373 aa27.22■■□□□ 1.95
SNX1-210ENST00000560260 BSDC1Q9NW68 430 aaPredicted RBP27.22■■□□□ 1.95
SNX1-210ENST00000560260 CEP85Q6P2H3 762 aa27.21■■□□□ 1.95
SNX1-210ENST00000560260 PUS3Q9BZE2 481 aaKnown RBP27.21■■□□□ 1.95
SNX1-210ENST00000560260 SRGAP3O43295 1099 aa27.2■■□□□ 1.95
SNX1-210ENST00000560260 GRIN3BO60391 1043 aa27.2■■□□□ 1.95
SNX1-210ENST00000560260 PRELPP51888 382 aa27.2■■□□□ 1.95
SNX1-210ENST00000560260 PTPN12Q05209 780 aaKnown RBP27.2■■□□□ 1.95
SNX1-210ENST00000560260 ARHGAP27Q6ZUM4 889 aa27.2■■□□□ 1.95
SNX1-210ENST00000560260 IRX6P78412 446 aaPredicted RBP27.19■■□□□ 1.94
SNX1-210ENST00000560260 GPSM2P81274 684 aa27.19■■□□□ 1.94
SNX1-210ENST00000560260 TAF7LQ5H9L4 462 aa27.19■■□□□ 1.94
SNX1-210ENST00000560260 SOGA3Q5TF21 947 aa27.19■■□□□ 1.94
SNX1-210ENST00000560260 PA2G4Q9UQ80 394 aaKnown RBP27.19■■□□□ 1.94
SNX1-210ENST00000560260 CC2D2BQ6DHV5 1058 aa27.18■■□□□ 1.94
SNX1-210ENST00000560260 MPHOSPH8Q99549 860 aa27.18■■□□□ 1.94
SNX1-210ENST00000560260 MINPP1Q9UNW1 487 aa27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms