RNA–Protein interactions for RNA: ENST00000560213.1

LRRC28-217, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-217ENST00000560213 CTSWP56202 376 aa20.58■□□□□ 0.89
LRRC28-217ENST00000560213 FTSJ3Q8IY81 847 aaKnown RBP20.58■□□□□ 0.89
LRRC28-217ENST00000560213 DZIP1LQ8IYY4 767 aaKnown RBP20.58■□□□□ 0.89
LRRC28-217ENST00000560213 CCDC85AQ96PX6 553 aaPredicted RBP20.58■□□□□ 0.89
LRRC28-217ENST00000560213 USP44Q9H0E7 712 aa20.58■□□□□ 0.89
LRRC28-217ENST00000560213 ZNF219Q9P2Y4 722 aaPredicted RBP20.58■□□□□ 0.89
LRRC28-217ENST00000560213 MYH3P11055 1940 aa20.58■□□□□ 0.88
LRRC28-217ENST00000560213 C21orf2O43822 256 aa20.57■□□□□ 0.88
LRRC28-217ENST00000560213 UTYO14607 1347 aa20.56■□□□□ 0.88
LRRC28-217ENST00000560213 MS4A1P11836 297 aa20.56■□□□□ 0.88
LRRC28-217ENST00000560213 ARHGAP27Q6ZUM4 889 aa20.56■□□□□ 0.88
LRRC28-217ENST00000560213 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.56■□□□□ 0.88
LRRC28-217ENST00000560213 TTLL11Q8NHH1 800 aa20.56■□□□□ 0.88
LRRC28-217ENST00000560213 BBOX1O75936 387 aa20.55■□□□□ 0.88
LRRC28-217ENST00000560213 GRAPQ13588 217 aa20.55■□□□□ 0.88
LRRC28-217ENST00000560213 TMEM57Q8N5G2 664 aa20.55■□□□□ 0.88
LRRC28-217ENST00000560213 GRAPLQ8TC17 118 aaPredicted RBP20.55■□□□□ 0.88
LRRC28-217ENST00000560213 TAF1P21675 1872 aa20.54■□□□□ 0.88
LRRC28-217ENST00000560213 PLIN1O60240 522 aa20.54■□□□□ 0.88
LRRC28-217ENST00000560213 SOGA3Q5TF21 947 aa20.54■□□□□ 0.88
LRRC28-217ENST00000560213 SUCLG2Q96I99 432 aa20.54■□□□□ 0.88
LRRC28-217ENST00000560213 HDAC5Q9UQL6 1122 aa20.54■□□□□ 0.88
LRRC28-217ENST00000560213 PPEF1O14829 653 aaPredicted RBP20.53■□□□□ 0.88
LRRC28-217ENST00000560213 CSF1RP07333 972 aa20.53■□□□□ 0.88
LRRC28-217ENST00000560213 UBTFL1P0CB47 393 aaPredicted RBP20.53■□□□□ 0.88
LRRC28-217ENST00000560213 FOXO4P98177 505 aa20.53■□□□□ 0.88
LRRC28-217ENST00000560213 TMX4Q9H1E5 349 aaPredicted RBP20.53■□□□□ 0.88
LRRC28-217ENST00000560213 SEC31BQ9NQW1 1179 aa20.53■□□□□ 0.88
LRRC28-217ENST00000560213 CHMP3Q9Y3E7 222 aa20.53■□□□□ 0.88
LRRC28-217ENST00000560213 RPS8P62241 208 aaKnown RBP20.52■□□□□ 0.88
LRRC28-217ENST00000560213 EPHA10Q5JZY3 1008 aa20.52■□□□□ 0.88
LRRC28-217ENST00000560213 LMBR1LQ6UX01 489 aa20.52■□□□□ 0.88
LRRC28-217ENST00000560213 PANK1Q8TE04 598 aa20.52■□□□□ 0.88
LRRC28-217ENST00000560213 C7orf43Q8WVR3 580 aa20.52■□□□□ 0.88
LRRC28-217ENST00000560213 CELF1Q92879 486 aaKnown RBP20.52■□□□□ 0.88
LRRC28-217ENST00000560213 GREM2Q9H772 168 aa20.52■□□□□ 0.88
LRRC28-217ENST00000560213 GNAI3P08754 354 aa20.51■□□□□ 0.87
LRRC28-217ENST00000560213 RLBP1P12271 317 aa20.51■□□□□ 0.87
LRRC28-217ENST00000560213 CC2D2BQ6DHV5 1058 aa20.51■□□□□ 0.87
LRRC28-217ENST00000560213 TMC4Q7Z404 712 aa20.51■□□□□ 0.87
LRRC28-217ENST00000560213 ITPRIPQ8IWB1 547 aa20.51■□□□□ 0.87
LRRC28-217ENST00000560213 CDC5LQ99459 802 aaKnown RBP20.51■□□□□ 0.87
LRRC28-217ENST00000560213 MEIS3Q99687 375 aa20.51■□□□□ 0.87
LRRC28-217ENST00000560213 RTL9Q8NET4 1388 aa20.5■□□□□ 0.87
LRRC28-217ENST00000560213 FAM161AQ3B820 660 aa20.5■□□□□ 0.87
LRRC28-217ENST00000560213 CCDC93Q567U6 631 aa20.5■□□□□ 0.87
LRRC28-217ENST00000560213 ANKRD18AQ8IVF6 992 aa20.5■□□□□ 0.87
LRRC28-217ENST00000560213 SP8Q8IXZ3 490 aa20.5■□□□□ 0.87
LRRC28-217ENST00000560213 KAZALD1Q96I82 304 aa20.5■□□□□ 0.87
LRRC28-217ENST00000560213 BICC1Q9H694 974 aaKnown RBP20.5■□□□□ 0.87
LRRC28-217ENST00000560213 ATP6V0A2Q9Y487 856 aa20.5■□□□□ 0.87
LRRC28-217ENST00000560213 ANKRD18BA2A2Z9 1011 aa20.49■□□□□ 0.87
LRRC28-217ENST00000560213 ITGA6P23229 1130 aa20.49■□□□□ 0.87
LRRC28-217ENST00000560213 IFIT5Q13325 482 aaKnown RBP20.49■□□□□ 0.87
LRRC28-217ENST00000560213 OLFM4Q6UX06 510 aa20.49■□□□□ 0.87
LRRC28-217ENST00000560213 RTKN2Q8IZC4 609 aa20.49■□□□□ 0.87
LRRC28-217ENST00000560213 CCDC57Q2TAC2 916 aa20.48■□□□□ 0.87
LRRC28-217ENST00000560213 IGHMBP2P38935 993 aaKnown RBP20.47■□□□□ 0.87
LRRC28-217ENST00000560213 PDE3AQ14432 1141 aa20.47■□□□□ 0.87
LRRC28-217ENST00000560213 RABL6Q3YEC7 729 aaPredicted RBP20.47■□□□□ 0.87
LRRC28-217ENST00000560213 GRIPAP1Q4V328 841 aa20.47■□□□□ 0.87
LRRC28-217ENST00000560213 ANKRD44Q8N8A2 993 aa20.47■□□□□ 0.87
LRRC28-217ENST00000560213 LRRFIP2Q9Y608 721 aaKnown RBP20.47■□□□□ 0.87
LRRC28-217ENST00000560213 FER1L6Q2WGJ9 1857 aa20.45■□□□□ 0.86
LRRC28-217ENST00000560213 CHD4Q14839 1912 aa20.45■□□□□ 0.86
LRRC28-217ENST00000560213 TAF7LQ5H9L4 462 aa20.45■□□□□ 0.86
LRRC28-217ENST00000560213 MPHOSPH8Q99549 860 aa20.45■□□□□ 0.86
LRRC28-217ENST00000560213 TAOK3Q9H2K8 898 aa20.45■□□□□ 0.86
LRRC28-217ENST00000560213 COG6Q9Y2V7 657 aa20.45■□□□□ 0.86
LRRC28-217ENST00000560213 COL4A1P02462 1669 aa20.45■□□□□ 0.86
LRRC28-217ENST00000560213 NFKBIEO00221 500 aa20.44■□□□□ 0.86
LRRC28-217ENST00000560213 ZBTB7BO15156 539 aaPredicted RBP20.44■□□□□ 0.86
LRRC28-217ENST00000560213 GNAI2P04899 355 aa20.44■□□□□ 0.86
LRRC28-217ENST00000560213 RRP1P56182 461 aaKnown RBP20.44■□□□□ 0.86
LRRC28-217ENST00000560213 RASSF7Q02833 373 aa20.44■□□□□ 0.86
LRRC28-217ENST00000560213 MVPQ14764 893 aaKnown RBP20.44■□□□□ 0.86
LRRC28-217ENST00000560213 MPNDQ8N594 471 aa20.44■□□□□ 0.86
LRRC28-217ENST00000560213 BSDC1Q9NW68 430 aaPredicted RBP20.44■□□□□ 0.86
LRRC28-217ENST00000560213 FKBP4Q02790 459 aaKnown RBP eCLIP20.43■□□□□ 0.86
LRRC28-217ENST00000560213 C20orf194Q5TEA3 1177 aa20.43■□□□□ 0.86
LRRC28-217ENST00000560213 SLC51AQ86UW1 340 aa20.43■□□□□ 0.86
LRRC28-217ENST00000560213 DDX19BQ9UMR2 479 aa20.43■□□□□ 0.86
LRRC28-217ENST00000560213 NSFL1CQ9UNZ2 370 aaKnown RBP20.43■□□□□ 0.86
LRRC28-217ENST00000560213 LTBP3Q9NS15 1303 aa20.43■□□□□ 0.86
LRRC28-217ENST00000560213 SPEF2Q9C093 1822 aa20.43■□□□□ 0.86
LRRC28-217ENST00000560213 CCDC88AQ3V6T2 1871 aa20.42■□□□□ 0.86
LRRC28-217ENST00000560213 DPP8Q6V1X1 898 aaPredicted RBP20.42■□□□□ 0.86
LRRC28-217ENST00000560213 ZNF594Q96JF6 807 aaPredicted RBP20.42■□□□□ 0.86
LRRC28-217ENST00000560213 PSMD1Q99460 953 aa20.42■□□□□ 0.86
LRRC28-217ENST00000560213 CHMP4BQ9H444 224 aaKnown RBP20.42■□□□□ 0.86
LRRC28-217ENST00000560213 SBF1O95248 1867 aa20.41■□□□□ 0.86
LRRC28-217ENST00000560213 LMNB1P20700 586 aa20.41■□□□□ 0.86
LRRC28-217ENST00000560213 ANKIB1Q9P2G1 1089 aa20.41■□□□□ 0.86
LRRC28-217ENST00000560213 GPSM2P81274 684 aa20.4■□□□□ 0.86
LRRC28-217ENST00000560213 C9orf131Q5VYM1 1079 aa20.4■□□□□ 0.86
LRRC28-217ENST00000560213 LDHAL6AQ6ZMR3 332 aa20.4■□□□□ 0.86
LRRC28-217ENST00000560213 SUPT20HQ8NEM7 779 aa20.4■□□□□ 0.86
LRRC28-217ENST00000560213 MINPP1Q9UNW1 487 aa20.4■□□□□ 0.86
LRRC28-217ENST00000560213 LRRC37AA6NMS7 1700 aa20.39■□□□□ 0.86
LRRC28-217ENST00000560213 SNED1Q8TER0 1413 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms