RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 NLRP10Q86W26 655 aa21.81■■□□□ 1.08
SNX1-208ENST00000559844 FAM177BA6PVY3 158 aa21.8■■□□□ 1.08
SNX1-208ENST00000559844 TRIM28Q13263 835 aaKnown RBP21.8■■□□□ 1.08
SNX1-208ENST00000559844 CCDC191Q8NCU4 936 aa21.8■■□□□ 1.08
SNX1-208ENST00000559844 CWC25Q9NXE8 425 aaPredicted RBP21.8■■□□□ 1.08
SNX1-208ENST00000559844 STAP2Q9UGK3 403 aa21.8■■□□□ 1.08
SNX1-208ENST00000559844 CARMIL3Q8ND23 1372 aa21.8■■□□□ 1.08
SNX1-208ENST00000559844 GRM8O00222 908 aa21.79■■□□□ 1.08
SNX1-208ENST00000559844 TM4SF1P30408 202 aa21.79■■□□□ 1.08
SNX1-208ENST00000559844 PARP10Q53GL7 1025 aa21.79■■□□□ 1.08
SNX1-208ENST00000559844 KIF1BPQ96EK5 621 aa21.79■■□□□ 1.08
SNX1-208ENST00000559844 MMP10P09238 476 aa21.79■■□□□ 1.08
SNX1-208ENST00000559844 DDR1Q08345 913 aa21.78■■□□□ 1.08
SNX1-208ENST00000559844 GCKRQ14397 625 aa21.78■■□□□ 1.08
SNX1-208ENST00000559844 SUSD4Q5VX71 490 aa21.78■■□□□ 1.08
SNX1-208ENST00000559844 MTFR1LQ9H019 292 aa21.78■■□□□ 1.08
SNX1-208ENST00000559844 RHPN1Q8TCX5 695 aa21.78■■□□□ 1.08
SNX1-208ENST00000559844 ATF5Q9Y2D1 282 aaPredicted RBP21.77■■□□□ 1.08
SNX1-208ENST00000559844 POLRMTO00411 1230 aaKnown RBP21.76■■□□□ 1.07
SNX1-208ENST00000559844 NBPF5PQ86XG9 351 aaPredicted RBP21.76■■□□□ 1.07
SNX1-208ENST00000559844 HSCBQ8IWL3 235 aa21.76■■□□□ 1.07
SNX1-208ENST00000559844 SNX21Q969T3 373 aa21.76■■□□□ 1.07
SNX1-208ENST00000559844 UTP14AQ9BVJ6 771 aaKnown RBP21.76■■□□□ 1.07
SNX1-208ENST00000559844 TRMT112Q9UI30 125 aaKnown RBP21.76■■□□□ 1.07
SNX1-208ENST00000559844 SERPINB2P05120 415 aa21.75■■□□□ 1.07
SNX1-208ENST00000559844 PARP3Q9Y6F1 533 aa21.75■■□□□ 1.07
SNX1-208ENST00000559844 NRXN2Q9P2S2 1712 aa21.75■■□□□ 1.07
SNX1-208ENST00000559844 NPHP1O15259 732 aa21.74■■□□□ 1.07
SNX1-208ENST00000559844 NTSR2O95665 410 aa21.74■■□□□ 1.07
SNX1-208ENST00000559844 ERC1Q8IUD2 1116 aa21.74■■□□□ 1.07
SNX1-208ENST00000559844 JARID2Q92833 1246 aaPredicted RBP21.74■■□□□ 1.07
SNX1-208ENST00000559844 FAM89AQ96GI7 184 aa21.74■■□□□ 1.07
SNX1-208ENST00000559844 UBE3BQ7Z3V4 1068 aa21.74■■□□□ 1.07
SNX1-208ENST00000559844 NUTM1Q86Y26 1132 aa21.74■■□□□ 1.07
SNX1-208ENST00000559844 NYXQ9GZU5 481 aa21.74■■□□□ 1.07
SNX1-208ENST00000559844 REC8O95072 547 aa21.73■■□□□ 1.07
SNX1-208ENST00000559844 GTF2E1P29083 439 aaPredicted RBP21.73■■□□□ 1.07
SNX1-208ENST00000559844 TPTE2Q6XPS3 522 aa21.73■■□□□ 1.07
SNX1-208ENST00000559844 CNBD1Q8NA66 436 aa21.73■■□□□ 1.07
SNX1-208ENST00000559844 ZBTB38Q8NAP3 1195 aaPredicted RBP21.73■■□□□ 1.07
SNX1-208ENST00000559844 SUCLG2Q96I99 432 aa21.73■■□□□ 1.07
SNX1-208ENST00000559844 IL1RAPL2Q9NP60 686 aa21.73■■□□□ 1.07
SNX1-208ENST00000559844 SH3TC1Q8TE82 1336 aa21.72■■□□□ 1.07
SNX1-208ENST00000559844 OS9Q13438 667 aaPredicted RBP21.72■■□□□ 1.07
SNX1-208ENST00000559844 PCCAP05165 728 aaPredicted RBP21.72■■□□□ 1.07
SNX1-208ENST00000559844 SYNE4Q8N205 404 aa21.72■■□□□ 1.07
SNX1-208ENST00000559844 LAMB2P55268 1798 aa21.72■■□□□ 1.07
SNX1-208ENST00000559844 DDX60Q8IY21 1712 aaKnown RBP21.72■■□□□ 1.07
SNX1-208ENST00000559844 MYH3P11055 1940 aa21.71■■□□□ 1.07
SNX1-208ENST00000559844 H7C1W4 665 aa21.71■■□□□ 1.07
SNX1-208ENST00000559844 ERC2O15083 957 aa21.71■■□□□ 1.07
SNX1-208ENST00000559844 POLD1P28340 1107 aa21.71■■□□□ 1.07
SNX1-208ENST00000559844 ERFEQ4G0M1 354 aa21.7■■□□□ 1.07
SNX1-208ENST00000559844 PRR5LQ6MZQ0 368 aa21.7■■□□□ 1.07
SNX1-208ENST00000559844 CCDC24Q8N4L8 307 aa21.7■■□□□ 1.07
SNX1-208ENST00000559844 KIF2CQ99661 725 aa21.7■■□□□ 1.07
SNX1-208ENST00000559844 USP26Q9BXU7 913 aa21.7■■□□□ 1.07
SNX1-208ENST00000559844 ABCC12Q96J65 1359 aa21.69■■□□□ 1.06
SNX1-208ENST00000559844 CASP7P55210 303 aa21.69■■□□□ 1.06
SNX1-208ENST00000559844 BICC1Q9H694 974 aaKnown RBP21.69■■□□□ 1.06
SNX1-208ENST00000559844 NFKBIBQ15653 356 aa21.68■■□□□ 1.06
SNX1-208ENST00000559844 KAZALD1Q96I82 304 aa21.68■■□□□ 1.06
SNX1-208ENST00000559844 SPON1Q9HCB6 807 aa21.68■■□□□ 1.06
SNX1-208ENST00000559844 ANKRD31Q8N7Z5 1873 aa21.68■■□□□ 1.06
SNX1-208ENST00000559844 TRIM6-TRIM34B2RNG4 842 aa21.68■■□□□ 1.06
SNX1-208ENST00000559844 IRS4O14654 1257 aaPredicted RBP21.68■■□□□ 1.06
SNX1-208ENST00000559844 ST5P78524 1137 aa21.68■■□□□ 1.06
SNX1-208ENST00000559844 TSHZ3Q63HK5 1081 aa21.68■■□□□ 1.06
SNX1-208ENST00000559844 CLASRPQ8N2M8 674 aaKnown RBP21.68■■□□□ 1.06
SNX1-208ENST00000559844 ANTXR1Q9H6X2 564 aa21.68■■□□□ 1.06
SNX1-208ENST00000559844 TTC41PQ6P2S7 1318 aa21.67■■□□□ 1.06
SNX1-208ENST00000559844 CDHR2Q9BYE9 1310 aa21.67■■□□□ 1.06
SNX1-208ENST00000559844 SGIP1Q9BQI5 828 aa21.67■■□□□ 1.06
SNX1-208ENST00000559844 SLKQ9H2G2 1235 aaPredicted RBP21.67■■□□□ 1.06
SNX1-208ENST00000559844 TNRC6CQ9HCJ0 1690 aaKnown RBP21.67■■□□□ 1.06
SNX1-208ENST00000559844 HCLS1P14317 486 aaPredicted RBP21.67■■□□□ 1.06
SNX1-208ENST00000559844 PTGER2P43116 358 aa21.67■■□□□ 1.06
SNX1-208ENST00000559844 RILPL2Q969X0 211 aa21.67■■□□□ 1.06
SNX1-208ENST00000559844 RABEP1Q15276 862 aa21.66■■□□□ 1.06
SNX1-208ENST00000559844 G3BP1Q13283 466 aaKnown RBP eCLIP21.65■■□□□ 1.06
SNX1-208ENST00000559844 PI4K2BQ8TCG2 481 aa21.65■■□□□ 1.06
SNX1-208ENST00000559844 GPATCH3Q96I76 525 aa21.65■■□□□ 1.06
SNX1-208ENST00000559844 CHMLP26374 656 aa21.64■■□□□ 1.05
SNX1-208ENST00000559844 SLC10A5Q5PT55 438 aa21.64■■□□□ 1.05
SNX1-208ENST00000559844 ESYT1Q9BSJ8 1104 aa21.64■■□□□ 1.05
SNX1-208ENST00000559844 KIF13BQ9NQT8 1826 aa21.64■■□□□ 1.05
SNX1-208ENST00000559844 HSP90B1P14625 803 aaKnown RBP21.63■■□□□ 1.05
SNX1-208ENST00000559844 PA2G4Q9UQ80 394 aaKnown RBP21.63■■□□□ 1.05
SNX1-208ENST00000559844 PDE8AO60658 829 aa21.63■■□□□ 1.05
SNX1-208ENST00000559844 GLRX3O76003 335 aaKnown RBP21.63■■□□□ 1.05
SNX1-208ENST00000559844 CNTROBQ8N137 903 aa21.63■■□□□ 1.05
SNX1-208ENST00000559844 EPB41L2O43491 1005 aaKnown RBP21.62■■□□□ 1.05
SNX1-208ENST00000559844 IFIT2P09913 472 aaKnown RBP21.62■■□□□ 1.05
SNX1-208ENST00000559844 RIC1Q4ADV7 1423 aa21.62■■□□□ 1.05
SNX1-208ENST00000559844 EPHA10Q5JZY3 1008 aa21.62■■□□□ 1.05
SNX1-208ENST00000559844 C10orf71Q711Q0 1435 aa21.62■■□□□ 1.05
SNX1-208ENST00000559844 PLA2G12BQ9BX93 195 aa21.62■■□□□ 1.05
SNX1-208ENST00000559844 BRIP1Q9BX63 1249 aa21.61■■□□□ 1.05
SNX1-208ENST00000559844 FOXO4P98177 505 aa21.61■■□□□ 1.05
SNX1-208ENST00000559844 RABL6Q3YEC7 729 aaPredicted RBP21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms