RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 WDR43Q15061 677 aaKnown RBP eCLIP11.95□□□□□ -0.5
HDDC3-204ENST00000559834 PLBD2Q8NHP8 589 aa11.95□□□□□ -0.5
HDDC3-204ENST00000559834 ZC3H15Q8WU90 426 aaKnown RBP11.95□□□□□ -0.5
HDDC3-204ENST00000559834 GPR101Q96P66 508 aaPredicted RBP11.95□□□□□ -0.5
HDDC3-204ENST00000559834 DBF4Q9UBU7 674 aaPredicted RBP11.95□□□□□ -0.5
HDDC3-204ENST00000559834 ADAMTSL1Q8N6G6 1762 aa11.95□□□□□ -0.5
HDDC3-204ENST00000559834 MYBBP1AQ9BQG0 1328 aaKnown RBP11.94□□□□□ -0.5
HDDC3-204ENST00000559834 CDHR2Q9BYE9 1310 aa11.94□□□□□ -0.5
HDDC3-204ENST00000559834 H7C1D1 291 aa11.94□□□□□ -0.5
HDDC3-204ENST00000559834 HOXB7P09629 217 aa11.94□□□□□ -0.5
HDDC3-204ENST00000559834 GMPSP49915 693 aaPredicted RBP11.94□□□□□ -0.5
HDDC3-204ENST00000559834 HDGFL1Q5TGJ6 251 aa11.94□□□□□ -0.5
HDDC3-204ENST00000559834 CST9Q5W186 159 aa11.94□□□□□ -0.5
HDDC3-204ENST00000559834 CCDC146Q8IYE0 955 aa11.94□□□□□ -0.5
HDDC3-204ENST00000559834 CAPNS2Q96L46 248 aa11.94□□□□□ -0.5
HDDC3-204ENST00000559834 HYPKQ9NX55 129 aa11.94□□□□□ -0.5
HDDC3-204ENST00000559834 TLL2Q9Y6L7 1015 aa11.94□□□□□ -0.5
HDDC3-204ENST00000559834 TRAF5O00463 557 aa11.93□□□□□ -0.5
HDDC3-204ENST00000559834 RAD17O75943 681 aa11.93□□□□□ -0.5
HDDC3-204ENST00000559834 MAP2K2P36507 400 aa11.93□□□□□ -0.5
HDDC3-204ENST00000559834 DDX10Q13206 875 aaKnown RBP11.93□□□□□ -0.5
HDDC3-204ENST00000559834 GRM1Q13255 1194 aa11.93□□□□□ -0.5
HDDC3-204ENST00000559834 CDC37L1Q7L3B6 337 aa11.93□□□□□ -0.5
HDDC3-204ENST00000559834 CHPF2Q9P2E5 772 aa11.93□□□□□ -0.5
HDDC3-204ENST00000559834 PGAP2Q9UHJ9 254 aa11.93□□□□□ -0.5
HDDC3-204ENST00000559834 COL4A5P29400 1685 aa11.93□□□□□ -0.5
HDDC3-204ENST00000559834 CELF2O95319 508 aaKnown RBP11.92□□□□□ -0.5
HDDC3-204ENST00000559834 HSPA8P11142 646 aaKnown RBP11.92□□□□□ -0.5
HDDC3-204ENST00000559834 HSP90B1P14625 803 aaKnown RBP11.92□□□□□ -0.5
HDDC3-204ENST00000559834 FMR1Q06787 632 aaKnown RBP eCLIP11.92□□□□□ -0.5
HDDC3-204ENST00000559834 SF3B3Q15393 1217 aaKnown RBP11.92□□□□□ -0.5
HDDC3-204ENST00000559834 KRT24Q2M2I5 525 aa11.92□□□□□ -0.5
HDDC3-204ENST00000559834 WASHC4Q2M389 1173 aa11.92□□□□□ -0.5
HDDC3-204ENST00000559834 CYP4F22Q6NT55 531 aa11.92□□□□□ -0.5
HDDC3-204ENST00000559834 SLC51AQ86UW1 340 aa11.92□□□□□ -0.5
HDDC3-204ENST00000559834 HHIPL1Q96JK4 782 aa11.92□□□□□ -0.5
HDDC3-204ENST00000559834 CFAP44Q96MT7 982 aa11.92□□□□□ -0.5
HDDC3-204ENST00000559834 CNOT7Q9UIV1 285 aaKnown RBP11.92□□□□□ -0.5
HDDC3-204ENST00000559834 NSFL1CQ9UNZ2 370 aaKnown RBP11.92□□□□□ -0.5
HDDC3-204ENST00000559834 TRIM35Q9UPQ4 493 aa11.92□□□□□ -0.5
HDDC3-204ENST00000559834 TRIM28Q13263 835 aaKnown RBP11.91□□□□□ -0.5
HDDC3-204ENST00000559834 DUSP27Q5VZP5 1158 aa11.91□□□□□ -0.5
HDDC3-204ENST00000559834 SAPCD2Q86UD0 394 aa11.91□□□□□ -0.5
HDDC3-204ENST00000559834 DPF2Q92785 391 aa11.91□□□□□ -0.5
HDDC3-204ENST00000559834 FAM89AQ96GI7 184 aa11.91□□□□□ -0.5
HDDC3-204ENST00000559834 EYA3Q99504 573 aa11.91□□□□□ -0.5
HDDC3-204ENST00000559834 ISCA1Q9BUE6 129 aa11.91□□□□□ -0.5
HDDC3-204ENST00000559834 CHMP4AQ9BY43 222 aa11.91□□□□□ -0.5
HDDC3-204ENST00000559834 ADAMTS8Q9UP79 889 aa11.91□□□□□ -0.5
HDDC3-204ENST00000559834 ATP5J2-PTCD1G3V325 749 aa11.9□□□□□ -0.5
HDDC3-204ENST00000559834 C6orf229H3BNL8 230 aa11.9□□□□□ -0.5
HDDC3-204ENST00000559834 CA12O43570 354 aa11.9□□□□□ -0.5
HDDC3-204ENST00000559834 RPS8P62241 208 aaKnown RBP11.9□□□□□ -0.5
HDDC3-204ENST00000559834 CALD1Q05682 793 aaKnown RBP11.9□□□□□ -0.5
HDDC3-204ENST00000559834 RIC3Q7Z5B4 369 aa11.9□□□□□ -0.5
HDDC3-204ENST00000559834 YDJCA8MPS7 323 aa11.89□□□□□ -0.51
HDDC3-204ENST00000559834 IRS4O14654 1257 aaPredicted RBP11.89□□□□□ -0.51
HDDC3-204ENST00000559834 HIRAP54198 1017 aaPredicted RBP11.89□□□□□ -0.51
HDDC3-204ENST00000559834 MICALL2Q8IY33 904 aa11.89□□□□□ -0.51
HDDC3-204ENST00000559834 CELF1Q92879 486 aaKnown RBP11.89□□□□□ -0.51
HDDC3-204ENST00000559834 ZNF428Q96B54 188 aa11.89□□□□□ -0.51
HDDC3-204ENST00000559834 ABHD8Q96I13 439 aa11.89□□□□□ -0.51
HDDC3-204ENST00000559834 GLIS2Q9BZE0 524 aaPredicted RBP11.89□□□□□ -0.51
HDDC3-204ENST00000559834 ZNF408Q9H9D4 720 aa11.89□□□□□ -0.51
HDDC3-204ENST00000559834 LTBP1Q14766 1721 aa11.89□□□□□ -0.51
HDDC3-204ENST00000559834 G3V3G9 751 aa11.88□□□□□ -0.51
HDDC3-204ENST00000559834 RIMBP2O15034 1052 aa11.88□□□□□ -0.51
HDDC3-204ENST00000559834 RPS12P25398 132 aaKnown RBP11.88□□□□□ -0.51
HDDC3-204ENST00000559834 GOLGA2Q08379 1002 aa11.88□□□□□ -0.51
HDDC3-204ENST00000559834 RTL5Q5HYW3 569 aaPredicted RBP11.88□□□□□ -0.51
HDDC3-204ENST00000559834 DCAF8Q5TAQ9 597 aa11.88□□□□□ -0.51
HDDC3-204ENST00000559834 ZBTB38Q8NAP3 1195 aaPredicted RBP11.88□□□□□ -0.51
HDDC3-204ENST00000559834 ZC3H12CQ9C0D7 883 aaKnown RBP11.88□□□□□ -0.51
HDDC3-204ENST00000559834 PCNTO95613 3336 aa11.88□□□□□ -0.51
HDDC3-204ENST00000559834 PSMD14O00487 310 aa11.87□□□□□ -0.51
HDDC3-204ENST00000559834 AOC2O75106 756 aa11.87□□□□□ -0.51
HDDC3-204ENST00000559834 GNAI1P63096 354 aa11.87□□□□□ -0.51
HDDC3-204ENST00000559834 GPSM2P81274 684 aa11.87□□□□□ -0.51
HDDC3-204ENST00000559834 USP48Q86UV5 1035 aa11.87□□□□□ -0.51
HDDC3-204ENST00000559834 TRPM4Q8TD43 1214 aa11.87□□□□□ -0.51
HDDC3-204ENST00000559834 DCPSQ96C86 337 aaKnown RBP11.87□□□□□ -0.51
HDDC3-204ENST00000559834 DBNDD1Q9H9R9 158 aa11.87□□□□□ -0.51
HDDC3-204ENST00000559834 MBIPQ9NS73 344 aa11.87□□□□□ -0.51
HDDC3-204ENST00000559834 POLLQ9UGP5 575 aa11.87□□□□□ -0.51
HDDC3-204ENST00000559834 ZBTB12Q9Y330 459 aaPredicted RBP11.87□□□□□ -0.51
HDDC3-204ENST00000559834 ANKRD36CQ5JPF3 1778 aa11.87□□□□□ -0.51
HDDC3-204ENST00000559834 ZNF853P0CG23 659 aa11.86□□□□□ -0.51
HDDC3-204ENST00000559834 BRPF1P55201 1214 aaPredicted RBP11.86□□□□□ -0.51
HDDC3-204ENST00000559834 NOGQ13253 232 aa11.86□□□□□ -0.51
HDDC3-204ENST00000559834 SAMD7Q7Z3H4 446 aa11.86□□□□□ -0.51
HDDC3-204ENST00000559834 CCDC191Q8NCU4 936 aa11.86□□□□□ -0.51
HDDC3-204ENST00000559834 TBC1D16Q8TBP0 767 aa11.86□□□□□ -0.51
HDDC3-204ENST00000559834 IFT57Q9NWB7 429 aa11.86□□□□□ -0.51
HDDC3-204ENST00000559834 ANKIB1Q9P2G1 1089 aa11.86□□□□□ -0.51
HDDC3-204ENST00000559834 TRPM7Q96QT4 1865 aa11.85□□□□□ -0.51
HDDC3-204ENST00000559834 ELL2O00472 640 aaPredicted RBP11.85□□□□□ -0.51
HDDC3-204ENST00000559834 ECE2O60344 883 aa11.85□□□□□ -0.51
HDDC3-204ENST00000559834 DDX58O95786 925 aaKnown RBP11.85□□□□□ -0.51
HDDC3-204ENST00000559834 DOK7Q18PE1 504 aa11.85□□□□□ -0.51
HDDC3-204ENST00000559834 CCDC152Q4G0S7 254 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms