RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 SLFN5Q08AF3 891 aa5.55□□□□□ -1.52
SNX1-205ENST00000559339 DPP8Q6V1X1 898 aaPredicted RBP5.55□□□□□ -1.52
SNX1-205ENST00000559339 SP8Q8IXZ3 490 aa5.55□□□□□ -1.52
SNX1-205ENST00000559339 SYNE4Q8N205 404 aa5.55□□□□□ -1.52
SNX1-205ENST00000559339 LARGE2Q8N3Y3 721 aa5.55□□□□□ -1.52
SNX1-205ENST00000559339 CDC5LQ99459 802 aaKnown RBP5.55□□□□□ -1.52
SNX1-205ENST00000559339 VPS33BQ9H267 617 aa5.55□□□□□ -1.52
SNX1-205ENST00000559339 ZNF277Q9NRM2 450 aaPredicted RBP5.55□□□□□ -1.52
SNX1-205ENST00000559339 ZBTB12Q9Y330 459 aaPredicted RBP5.55□□□□□ -1.52
SNX1-205ENST00000559339 KIAA1551Q9HCM1 1747 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 PTPRCP08575 1304 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 IQCA1LA6NCM1 817 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 PPIP5K2O43314 1243 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 IGKV5-2P06315 115 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 CTSWP56202 376 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 EIF6P56537 245 aaKnown RBP5.54□□□□□ -1.52
SNX1-205ENST00000559339 RPS8P62241 208 aaKnown RBP5.54□□□□□ -1.52
SNX1-205ENST00000559339 HNRNPUQ00839 825 aaKnown RBP eCLIP5.54□□□□□ -1.52
SNX1-205ENST00000559339 GCKRQ14397 625 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 CWF19L2Q2TBE0 894 aaKnown RBP5.54□□□□□ -1.52
SNX1-205ENST00000559339 ALDH1L2Q3SY69 923 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 SLC4A10Q6U841 1118 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 OLFM4Q6UX06 510 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 C3orf67Q6ZVT6 689 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 G2E3Q7L622 706 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 UBE3BQ7Z3V4 1068 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 ANKRD18AQ8IVF6 992 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 NIM1KQ8IY84 436 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 MPNDQ8N594 471 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 RRAGCQ9HB90 399 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 NMRK2Q9NPI5 230 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 SMC4Q9NTJ3 1288 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 C9orf78Q9NZ63 289 aaPredicted RBP5.54□□□□□ -1.52
SNX1-205ENST00000559339 ANKIB1Q9P2G1 1089 aa5.54□□□□□ -1.52
SNX1-205ENST00000559339 NSFL1CQ9UNZ2 370 aaKnown RBP5.54□□□□□ -1.52
SNX1-205ENST00000559339 BRCA1P38398 1863 aaKnown RBP5.54□□□□□ -1.52
SNX1-205ENST00000559339 NUP98P52948 1817 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 ARFGEF1Q9Y6D6 1849 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 CDHR2Q9BYE9 1310 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 F6X3S4 739 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 G3V3G9 751 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 C6orf229H3BNL8 230 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 H7C1W4 665 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 FZD9O00144 591 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 KIF3CO14782 793 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 ALDH1L1O75891 902 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 LMOD1P29536 600 aaPredicted RBP5.53□□□□□ -1.52
SNX1-205ENST00000559339 DSG3P32926 999 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 IGHMBP2P38935 993 aaKnown RBP5.53□□□□□ -1.52
SNX1-205ENST00000559339 WASHC4Q2M389 1173 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 BEND3Q5T5X7 828 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 DCAF8Q5TAQ9 597 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 GPC2Q8N158 579 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 JARID2Q92833 1246 aaPredicted RBP5.53□□□□□ -1.52
SNX1-205ENST00000559339 CELF1Q92879 486 aaKnown RBP5.53□□□□□ -1.52
SNX1-205ENST00000559339 CDCA7LQ96GN5 454 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 CCDC85AQ96PX6 553 aaPredicted RBP5.53□□□□□ -1.52
SNX1-205ENST00000559339 EYA3Q99504 573 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 MPHOSPH8Q99549 860 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 RTFDC1Q9BY42 306 aaPredicted RBP5.53□□□□□ -1.52
SNX1-205ENST00000559339 ZC3H12CQ9C0D7 883 aaKnown RBP5.53□□□□□ -1.52
SNX1-205ENST00000559339 SRCIN1Q9C0H9 1055 aa5.53□□□□□ -1.52
SNX1-205ENST00000559339 ANKRD31Q8N7Z5 1873 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 GRM8O00222 908 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 IPO8O15397 1037 aaKnown RBP5.52□□□□□ -1.53
SNX1-205ENST00000559339 DDNO94850 711 aaPredicted RBP5.52□□□□□ -1.53
SNX1-205ENST00000559339 ITGA6P23229 1130 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 PRELPP51888 382 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 KIAA2012Q0VF49 1180 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 FSTL1Q12841 308 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 IFIT5Q13325 482 aaKnown RBP5.52□□□□□ -1.53
SNX1-205ENST00000559339 AOC3Q16853 763 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 CCDC57Q2TAC2 916 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 TAF7LQ5H9L4 462 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 PNMA8AQ86V59 439 aaPredicted RBP5.52□□□□□ -1.53
SNX1-205ENST00000559339 TRMT2AQ8IZ69 625 aaKnown RBP5.52□□□□□ -1.53
SNX1-205ENST00000559339 SMC1BQ8NDV3 1235 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 TTLL11Q8NHH1 800 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 RBM46Q8TBY0 533 aaKnown RBP5.52□□□□□ -1.53
SNX1-205ENST00000559339 SSH1Q8WYL5 1049 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 PLA2G12BQ9BX93 195 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 BCL2L13Q9BXK5 485 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 BSDC1Q9NW68 430 aaPredicted RBP5.52□□□□□ -1.53
SNX1-205ENST00000559339 ZNRF3Q9ULT6 936 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 HDAC5Q9UQL6 1122 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 CHMP3Q9Y3E7 222 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 SLX4Q8IY92 1834 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 DLEC1Q9Y238 1755 aa5.52□□□□□ -1.53
SNX1-205ENST00000559339 KIF16BQ96L93 1317 aa5.51□□□□□ -1.53
SNX1-205ENST00000559339 ANKRD18BA2A2Z9 1011 aa5.51□□□□□ -1.53
SNX1-205ENST00000559339 HSPA6P17066 643 aa5.51□□□□□ -1.53
SNX1-205ENST00000559339 ATP2B4P23634 1241 aa5.51□□□□□ -1.53
SNX1-205ENST00000559339 TNIP1Q15025 636 aa5.51□□□□□ -1.53
SNX1-205ENST00000559339 MRPL50Q8N5N7 158 aaKnown RBP5.51□□□□□ -1.53
SNX1-205ENST00000559339 L3MBTL3Q96JM7 780 aaPredicted RBP5.51□□□□□ -1.53
SNX1-205ENST00000559339 API5Q9BZZ5 524 aaKnown RBP5.51□□□□□ -1.53
SNX1-205ENST00000559339 GREM2Q9H772 168 aa5.51□□□□□ -1.53
SNX1-205ENST00000559339 SEC31BQ9NQW1 1179 aa5.51□□□□□ -1.53
SNX1-205ENST00000559339 PODXL2Q9NZ53 605 aa5.51□□□□□ -1.53
SNX1-205ENST00000559339 HACL1Q9UJ83 578 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms