RNA–Protein interactions for RNA: ENST00000559222.5

CASC4-209, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 742 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-209ENST00000559222 PPEF1O14829 653 aaPredicted RBP23.78■■□□□ 1.4
CASC4-209ENST00000559222 TNNQ9UQP3 1299 aa23.78■■□□□ 1.4
CASC4-209ENST00000559222 PDE8AO60658 829 aa23.77■■□□□ 1.4
CASC4-209ENST00000559222 C9orf131Q5VYM1 1079 aa23.77■■□□□ 1.4
CASC4-209ENST00000559222 CELF1Q92879 486 aaKnown RBP23.77■■□□□ 1.4
CASC4-209ENST00000559222 SEC31BQ9NQW1 1179 aa23.77■■□□□ 1.4
CASC4-209ENST00000559222 CCDC93Q567U6 631 aa23.76■■□□□ 1.39
CASC4-209ENST00000559222 BRPF1P55201 1214 aaPredicted RBP23.75■■□□□ 1.39
CASC4-209ENST00000559222 CTSWP56202 376 aa23.75■■□□□ 1.39
CASC4-209ENST00000559222 GRAPQ13588 217 aa23.75■■□□□ 1.39
CASC4-209ENST00000559222 DDX46Q7L014 1031 aaKnown RBP23.75■■□□□ 1.39
CASC4-209ENST00000559222 GRAPLQ8TC17 118 aaPredicted RBP23.75■■□□□ 1.39
CASC4-209ENST00000559222 SRCIN1Q9C0H9 1055 aa23.75■■□□□ 1.39
CASC4-209ENST00000559222 RNF181Q9P0P0 153 aa23.75■■□□□ 1.39
CASC4-209ENST00000559222 DUOX1Q9NRD9 1551 aa23.74■■□□□ 1.39
CASC4-209ENST00000559222 COL4A5P29400 1685 aa23.74■■□□□ 1.39
CASC4-209ENST00000559222 LTBP1Q14766 1721 aa23.74■■□□□ 1.39
CASC4-209ENST00000559222 ALDH1L1O75891 902 aa23.73■■□□□ 1.39
CASC4-209ENST00000559222 EPHA10Q5JZY3 1008 aa23.73■■□□□ 1.39
CASC4-209ENST00000559222 TAOK3Q9H2K8 898 aa23.73■■□□□ 1.39
CASC4-209ENST00000559222 GRM8O00222 908 aa23.72■■□□□ 1.39
CASC4-209ENST00000559222 ZNF784Q8NCA9 323 aaPredicted RBP23.72■■□□□ 1.39
CASC4-209ENST00000559222 TTLL11Q8NHH1 800 aa23.72■■□□□ 1.39
CASC4-209ENST00000559222 GREM2Q9H772 168 aa23.72■■□□□ 1.39
CASC4-209ENST00000559222 LTBP3Q9NS15 1303 aa23.72■■□□□ 1.39
CASC4-209ENST00000559222 SOGA3Q5TF21 947 aa23.71■■□□□ 1.39
CASC4-209ENST00000559222 YTHDC1Q96MU7 727 aaKnown RBP23.71■■□□□ 1.39
CASC4-209ENST00000559222 PLA2G12BQ9BX93 195 aa23.71■■□□□ 1.39
CASC4-209ENST00000559222 ZNF277Q9NRM2 450 aaPredicted RBP23.71■■□□□ 1.39
CASC4-209ENST00000559222 ATP6V0A2Q9Y487 856 aa23.71■■□□□ 1.39
CASC4-209ENST00000559222 NBPF7P0C2Y1 421 aaPredicted RBP23.7■■□□□ 1.38
CASC4-209ENST00000559222 LMNB1P20700 586 aa23.7■■□□□ 1.38
CASC4-209ENST00000559222 FOXO4P98177 505 aa23.7■■□□□ 1.38
CASC4-209ENST00000559222 FKBP4Q02790 459 aaKnown RBP eCLIP23.7■■□□□ 1.38
CASC4-209ENST00000559222 CCDC152Q4G0S7 254 aa23.7■■□□□ 1.38
CASC4-209ENST00000559222 KIF16BQ96L93 1317 aa23.69■■□□□ 1.38
CASC4-209ENST00000559222 FAM161AQ3B820 660 aa23.69■■□□□ 1.38
CASC4-209ENST00000559222 ZNF526Q8TF50 670 aaPredicted RBP23.69■■□□□ 1.38
CASC4-209ENST00000559222 KAZALD1Q96I82 304 aa23.69■■□□□ 1.38
CASC4-209ENST00000559222 SUCLG2Q96I99 432 aa23.69■■□□□ 1.38
CASC4-209ENST00000559222 A0A1B0GUL6 1792 aa23.69■■□□□ 1.38
CASC4-209ENST00000559222 BBOX1O75936 387 aa23.68■■□□□ 1.38
CASC4-209ENST00000559222 FRAT1Q92837 279 aaPredicted RBP23.68■■□□□ 1.38
CASC4-209ENST00000559222 C9orf78Q9NZ63 289 aaPredicted RBP23.68■■□□□ 1.38
CASC4-209ENST00000559222 UTYO14607 1347 aa23.67■■□□□ 1.38
CASC4-209ENST00000559222 TRIM27P14373 513 aa23.67■■□□□ 1.38
CASC4-209ENST00000559222 SP8Q8IXZ3 490 aa23.67■■□□□ 1.38
CASC4-209ENST00000559222 RTKN2Q8IZC4 609 aa23.67■■□□□ 1.38
CASC4-209ENST00000559222 API5Q9BZZ5 524 aaKnown RBP23.67■■□□□ 1.38
CASC4-209ENST00000559222 RTL9Q8NET4 1388 aa23.66■■□□□ 1.38
CASC4-209ENST00000559222 CSF1RP07333 972 aa23.66■■□□□ 1.38
CASC4-209ENST00000559222 HSP90B1P14625 803 aaKnown RBP23.66■■□□□ 1.38
CASC4-209ENST00000559222 RPS8P62241 208 aaKnown RBP23.66■■□□□ 1.38
CASC4-209ENST00000559222 USP44Q9H0E7 712 aa23.65■■□□□ 1.38
CASC4-209ENST00000559222 CC2D2BQ6DHV5 1058 aa23.64■■□□□ 1.37
CASC4-209ENST00000559222 CLUAP1Q96AJ1 413 aa23.64■■□□□ 1.37
CASC4-209ENST00000559222 PSMD1Q99460 953 aa23.64■■□□□ 1.37
CASC4-209ENST00000559222 ITGA6P23229 1130 aa23.63■■□□□ 1.37
CASC4-209ENST00000559222 GPSM2P81274 684 aa23.63■■□□□ 1.37
CASC4-209ENST00000559222 LMBR1LQ6UX01 489 aa23.63■■□□□ 1.37
CASC4-209ENST00000559222 ARHGAP45Q92619 1136 aa23.63■■□□□ 1.37
CASC4-209ENST00000559222 GPR101Q96P66 508 aaPredicted RBP23.63■■□□□ 1.37
CASC4-209ENST00000559222 IARSP41252 1262 aaKnown RBP23.62■■□□□ 1.37
CASC4-209ENST00000559222 ATF7IPQ6VMQ6 1270 aa23.62■■□□□ 1.37
CASC4-209ENST00000559222 CCT4P50991 539 aaKnown RBP23.61■■□□□ 1.37
CASC4-209ENST00000559222 DPP8Q6V1X1 898 aaPredicted RBP23.61■■□□□ 1.37
CASC4-209ENST00000559222 ANKRD18AQ8IVF6 992 aa23.61■■□□□ 1.37
CASC4-209ENST00000559222 MPNDQ8N594 471 aa23.61■■□□□ 1.37
CASC4-209ENST00000559222 ANKRD44Q8N8A2 993 aa23.61■■□□□ 1.37
CASC4-209ENST00000559222 BICC1Q9H694 974 aaKnown RBP23.61■■□□□ 1.37
CASC4-209ENST00000559222 CHMP3Q9Y3E7 222 aa23.61■■□□□ 1.37
CASC4-209ENST00000559222 TMC4Q7Z404 712 aa23.6■■□□□ 1.37
CASC4-209ENST00000559222 MEIS3Q99687 375 aa23.6■■□□□ 1.37
CASC4-209ENST00000559222 RTFDC1Q9BY42 306 aaPredicted RBP23.6■■□□□ 1.37
CASC4-209ENST00000559222 WTIPA6NIX2 430 aaPredicted RBP23.59■■□□□ 1.37
CASC4-209ENST00000559222 RLBP1P12271 317 aa23.59■■□□□ 1.37
CASC4-209ENST00000559222 AOC3Q16853 763 aa23.59■■□□□ 1.37
CASC4-209ENST00000559222 ZKSCAN2Q63HK3 967 aa23.59■■□□□ 1.37
CASC4-209ENST00000559222 INTS3Q68E01 1043 aaKnown RBP23.59■■□□□ 1.37
CASC4-209ENST00000559222 ZNF594Q96JF6 807 aaPredicted RBP23.59■■□□□ 1.37
CASC4-209ENST00000559222 CDC5LQ99459 802 aaKnown RBP23.59■■□□□ 1.37
CASC4-209ENST00000559222 ZNF541Q9H0D2 1346 aa23.59■■□□□ 1.37
CASC4-209ENST00000559222 TMEM57Q8N5G2 664 aa23.58■■□□□ 1.37
CASC4-209ENST00000559222 POLLQ9UGP5 575 aa23.58■■□□□ 1.37
CASC4-209ENST00000559222 NSFL1CQ9UNZ2 370 aaKnown RBP23.58■■□□□ 1.37
CASC4-209ENST00000559222 IPO8O15397 1037 aaKnown RBP23.57■■□□□ 1.36
CASC4-209ENST00000559222 NMRK2Q9NPI5 230 aa23.57■■□□□ 1.36
CASC4-209ENST00000559222 PPIP5K2O43314 1243 aa23.56■■□□□ 1.36
CASC4-209ENST00000559222 RABL6Q3YEC7 729 aaPredicted RBP23.56■■□□□ 1.36
CASC4-209ENST00000559222 TMX4Q9H1E5 349 aaPredicted RBP23.56■■□□□ 1.36
CASC4-209ENST00000559222 ZC3H4Q9UPT8 1303 aaKnown RBP23.56■■□□□ 1.36
CASC4-209ENST00000559222 ANKRD18BA2A2Z9 1011 aa23.55■■□□□ 1.36
CASC4-209ENST00000559222 GRIPAP1Q4V328 841 aa23.55■■□□□ 1.36
CASC4-209ENST00000559222 LARGE2Q8N3Y3 721 aa23.55■■□□□ 1.36
CASC4-209ENST00000559222 TBC1D16Q8TBP0 767 aa23.55■■□□□ 1.36
CASC4-209ENST00000559222 GPBP1L1Q9HC44 474 aaPredicted RBP23.55■■□□□ 1.36
CASC4-209ENST00000559222 BSDC1Q9NW68 430 aaPredicted RBP23.55■■□□□ 1.36
CASC4-209ENST00000559222 RCAN3Q9UKA8 241 aa23.55■■□□□ 1.36
CASC4-209ENST00000559222 MINPP1Q9UNW1 487 aa23.55■■□□□ 1.36
CASC4-209ENST00000559222 WDR90Q96KV7 1748 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms