RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 SLC27A2O14975 620 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 EPB41L2O43491 1005 aaKnown RBP8.23□□□□□ -1.09
USP3-210ENST00000559192 MARCH6O60337 910 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 HMGB1P09429 215 aaKnown RBP8.23□□□□□ -1.09
USP3-210ENST00000559192 LMOD1P29536 600 aaPredicted RBP8.23□□□□□ -1.09
USP3-210ENST00000559192 CNNM3Q8NE01 707 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 USP16Q9Y5T5 823 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 KIF20AO95235 890 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 UBASH3AP57075 661 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 ME3Q16798 604 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 KIF4BQ2VIQ3 1234 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 BRMS1Q9HCU9 246 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 TBC1D2BQ9UPU7 963 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 TTC41PQ6P2S7 1318 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 UNC13BO14795 1591 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 IFIT1P09914 478 aaKnown RBP8.23□□□□□ -1.09
USP3-210ENST00000559192 MARCKSP29966 332 aaPredicted RBP8.23□□□□□ -1.09
USP3-210ENST00000559192 CCDC129Q6ZRS4 1044 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 CCDC82Q8N4S0 544 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 CCDC12Q8WUD4 166 aaPredicted RBP8.23□□□□□ -1.09
USP3-210ENST00000559192 MRPS27Q92552 414 aaKnown RBP8.23□□□□□ -1.09
USP3-210ENST00000559192 KIF24Q5T7B8 1368 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 KIF5CO60282 957 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 CAVIN2O95810 425 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.23□□□□□ -1.091e-6■■■□□ 15.4
USP3-210ENST00000559192 NPHP3Q7Z494 1330 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 XBP1P17861 261 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 PTH1RQ03431 593 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 SART3Q15020 963 aaKnown RBP8.23□□□□□ -1.09
USP3-210ENST00000559192 JAKMIP3Q5VZ66 844 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 LEO1Q8WVC0 666 aaPredicted RBP8.23□□□□□ -1.09
USP3-210ENST00000559192 CNNM1Q9NRU3 951 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 CTNNA3Q9UI47 895 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 ZDHHC9Q9Y397 364 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 MYOM2P54296 1465 aa8.23□□□□□ -1.09
USP3-210ENST00000559192 ATP5J2-PTCD1G3V325 749 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 PTCD1O75127 700 aaKnown RBP8.22□□□□□ -1.09
USP3-210ENST00000559192 CDKL5O76039 1030 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 RPS6KB1P23443 525 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.22□□□□□ -1.09
USP3-210ENST00000559192 SHROOM2Q13796 1616 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 ASXL2Q76L83 1435 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 A0A1B0GVL5 298 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 RBM33Q96EV2 1170 aaKnown RBP8.22□□□□□ -1.09
USP3-210ENST00000559192 SNRKQ9NRH2 765 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 NLRP1Q9C000 1473 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 PTPDC1A2A3K4 754 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 PIP4K2AP48426 406 aaPredicted RBP8.22□□□□□ -1.09
USP3-210ENST00000559192 CABP4P57796 275 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 TRIM22Q8IYM9 498 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 CCDC47Q96A33 483 aaKnown RBP8.22□□□□□ -1.09
USP3-210ENST00000559192 MAGEC2Q9UBF1 373 aaPredicted RBP8.22□□□□□ -1.09
USP3-210ENST00000559192 JAK2O60674 1132 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 NR1I2O75469 434 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 TXLNBQ8N3L3 684 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 ERO1AQ96HE7 468 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 RAI14Q9P0K7 980 aa8.22□□□□□ -1.09
USP3-210ENST00000559192 ORC3Q9UBD5 711 aaPredicted RBP8.22□□□□□ -1.09
USP3-210ENST00000559192 IDH1O75874 414 aaKnown RBP8.21□□□□□ -1.09
USP3-210ENST00000559192 ATP2B3Q16720 1220 aa8.21□□□□□ -1.09
USP3-210ENST00000559192 CCDC57Q2TAC2 916 aa8.21□□□□□ -1.09
USP3-210ENST00000559192 EYA1Q99502 592 aa8.21□□□□□ -1.09
USP3-210ENST00000559192 MTMR6Q9Y217 621 aa8.21□□□□□ -1.09
USP3-210ENST00000559192 SBNO2Q9Y2G9 1366 aa8.21□□□□□ -1.09
USP3-210ENST00000559192 LAMC1P11047 1609 aa8.21□□□□□ -1.09
USP3-210ENST00000559192 NBPF7P0C2Y1 421 aaPredicted RBP8.21□□□□□ -1.09
USP3-210ENST00000559192 RNF216Q9NWF9 866 aaPredicted RBP8.21□□□□□ -1.09
USP3-210ENST00000559192 HYPKQ9NX55 129 aa8.21□□□□□ -1.09
USP3-210ENST00000559192 MRVI1Q9Y6F6 885 aa8.21□□□□□ -1.09
USP3-210ENST00000559192 NDUFB9Q9Y6M9 179 aa8.21□□□□□ -1.09
USP3-210ENST00000559192 KARSQ15046 597 aaKnown RBP8.21□□□□□ -1.1
USP3-210ENST00000559192 CFAP74Q9C0B2 1584 aa8.21□□□□□ -1.1
USP3-210ENST00000559192 KIF1BO60333 1816 aa8.21□□□□□ -1.1
USP3-210ENST00000559192 TATP17735 454 aaPredicted RBP8.21□□□□□ -1.1
USP3-210ENST00000559192 VPS37DQ86XT2 251 aa8.21□□□□□ -1.1
USP3-210ENST00000559192 RASEFQ8IZ41 740 aa8.21□□□□□ -1.1
USP3-210ENST00000559192 KLHDC4Q8TBB5 520 aa8.21□□□□□ -1.1
USP3-210ENST00000559192 SYKP43405 635 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 MCM6Q14566 821 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 UBE3BQ7Z3V4 1068 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 PHF23Q9BUL5 403 aaPredicted RBP8.2□□□□□ -1.1
USP3-210ENST00000559192 UTP14AQ9BVJ6 771 aaKnown RBP8.2□□□□□ -1.1
USP3-210ENST00000559192 BICC1Q9H694 974 aaKnown RBP8.2□□□□□ -1.1
USP3-210ENST00000559192 TPCN1Q9ULQ1 816 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 MAP3K4Q9Y6R4 1608 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 PTCH1Q13635 1447 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 KLF18A0A0U1RQI7 1052 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 CLGNO14967 610 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 LARGE1O95461 756 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 TRHP20396 242 aaPredicted RBP8.2□□□□□ -1.1
USP3-210ENST00000559192 PDLIM2Q96JY6 352 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 CEP126Q9P2H0 1117 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 AOX1Q06278 1338 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 A0A087WZG4 1122 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 GOLGA6L10A6NI86 522 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 ADCK5Q3MIX3 580 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 CT47A1Q5JQC4 288 aaPredicted RBP8.2□□□□□ -1.1
USP3-210ENST00000559192 KRBA2Q6ZNG9 492 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 KIAA1328Q86T90 577 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 FAM135BQ49AJ0 1406 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms