RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 CSF1RP07333 972 aa13.14□□□□□ -0.31
LRRC28-204ENST00000558172 DPEP1P16444 411 aa13.14□□□□□ -0.31
LRRC28-204ENST00000558172 HOXA10P31260 410 aaPredicted RBP13.14□□□□□ -0.31
LRRC28-204ENST00000558172 CTSWP56202 376 aa13.14□□□□□ -0.31
LRRC28-204ENST00000558172 CNKSR1Q969H4 720 aa13.14□□□□□ -0.31
LRRC28-204ENST00000558172 SUCLG2Q96I99 432 aa13.14□□□□□ -0.31
LRRC28-204ENST00000558172 MEIS3Q99687 375 aa13.14□□□□□ -0.31
LRRC28-204ENST00000558172 PIM2Q9P1W9 311 aa13.14□□□□□ -0.31
LRRC28-204ENST00000558172 TAF1P21675 1872 aa13.14□□□□□ -0.31
LRRC28-204ENST00000558172 GNAI2P04899 355 aa13.13□□□□□ -0.31
LRRC28-204ENST00000558172 KCNA3P22001 575 aa13.13□□□□□ -0.31
LRRC28-204ENST00000558172 CHRNA5P30532 468 aa13.13□□□□□ -0.31
LRRC28-204ENST00000558172 FOXO4P98177 505 aa13.13□□□□□ -0.31
LRRC28-204ENST00000558172 C20orf194Q5TEA3 1177 aa13.13□□□□□ -0.31
LRRC28-204ENST00000558172 DDX46Q7L014 1031 aaKnown RBP13.13□□□□□ -0.31
LRRC28-204ENST00000558172 NLGN2Q8NFZ4 835 aa13.13□□□□□ -0.31
LRRC28-204ENST00000558172 TTLL11Q8NHH1 800 aa13.13□□□□□ -0.31
LRRC28-204ENST00000558172 ZNF622Q969S3 477 aaKnown RBP eCLIP13.13□□□□□ -0.31
LRRC28-204ENST00000558172 CRAMP1Q96RY5 1269 aa13.13□□□□□ -0.31
LRRC28-204ENST00000558172 ARFGEF1Q9Y6D6 1849 aa13.13□□□□□ -0.31
LRRC28-204ENST00000558172 RTL9Q8NET4 1388 aa13.12□□□□□ -0.31
LRRC28-204ENST00000558172 RABL6Q3YEC7 729 aaPredicted RBP13.12□□□□□ -0.31
LRRC28-204ENST00000558172 C3orf67Q6ZVT6 689 aa13.12□□□□□ -0.31
LRRC28-204ENST00000558172 TTLL6Q8N841 843 aa13.12□□□□□ -0.31
LRRC28-204ENST00000558172 KAZALD1Q96I82 304 aa13.12□□□□□ -0.31
LRRC28-204ENST00000558172 SLX4Q8IY92 1834 aa13.11□□□□□ -0.31
LRRC28-204ENST00000558172 BBOX1O75936 387 aa13.11□□□□□ -0.31
LRRC28-204ENST00000558172 EPHA10Q5JZY3 1008 aa13.11□□□□□ -0.31
LRRC28-204ENST00000558172 LMBR1LQ6UX01 489 aa13.11□□□□□ -0.31
LRRC28-204ENST00000558172 BICC1Q9H694 974 aaKnown RBP13.11□□□□□ -0.31
LRRC28-204ENST00000558172 LRRFIP2Q9Y608 721 aaKnown RBP13.11□□□□□ -0.31
LRRC28-204ENST00000558172 ANKRD18BA2A2Z9 1011 aa13.1□□□□□ -0.31
LRRC28-204ENST00000558172 IFIT5Q13325 482 aaKnown RBP13.1□□□□□ -0.31
LRRC28-204ENST00000558172 GRAPQ13588 217 aa13.1□□□□□ -0.31
LRRC28-204ENST00000558172 AAMPQ13685 434 aa13.1□□□□□ -0.31
LRRC28-204ENST00000558172 CCDC57Q2TAC2 916 aa13.1□□□□□ -0.31
LRRC28-204ENST00000558172 DALRD3Q5D0E6 543 aaKnown RBP13.1□□□□□ -0.31
LRRC28-204ENST00000558172 TMC4Q7Z404 712 aa13.1□□□□□ -0.31
LRRC28-204ENST00000558172 GRAPLQ8TC17 118 aaPredicted RBP13.1□□□□□ -0.31
LRRC28-204ENST00000558172 CDC5LQ99459 802 aaKnown RBP13.1□□□□□ -0.31
LRRC28-204ENST00000558172 ZBTB40Q9NUA8 1239 aa13.1□□□□□ -0.31
LRRC28-204ENST00000558172 CHMP3Q9Y3E7 222 aa13.1□□□□□ -0.31
LRRC28-204ENST00000558172 SPEF2Q9C093 1822 aa13.09□□□□□ -0.31
LRRC28-204ENST00000558172 ITGA6P23229 1130 aa13.09□□□□□ -0.31
LRRC28-204ENST00000558172 ANKRD44Q8N8A2 993 aa13.09□□□□□ -0.31
LRRC28-204ENST00000558172 CCDC85AQ96PX6 553 aaPredicted RBP13.09□□□□□ -0.31
LRRC28-204ENST00000558172 TMX4Q9H1E5 349 aaPredicted RBP13.09□□□□□ -0.31
LRRC28-204ENST00000558172 GREM2Q9H772 168 aa13.09□□□□□ -0.31
LRRC28-204ENST00000558172 RPS8P62241 208 aaKnown RBP13.08□□□□□ -0.32
LRRC28-204ENST00000558172 MTX1Q13505 466 aa13.08□□□□□ -0.32
LRRC28-204ENST00000558172 ANKRD18AQ8IVF6 992 aa13.08□□□□□ -0.32
LRRC28-204ENST00000558172 CRBNQ96SW2 442 aa13.08□□□□□ -0.32
LRRC28-204ENST00000558172 SEC31BQ9NQW1 1179 aa13.08□□□□□ -0.32
LRRC28-204ENST00000558172 DCAF8L1A6NGE4 600 aa13.07□□□□□ -0.32
LRRC28-204ENST00000558172 IGHMBP2P38935 993 aaKnown RBP13.07□□□□□ -0.32
LRRC28-204ENST00000558172 ATP8B2P98198 1209 aa13.07□□□□□ -0.32
LRRC28-204ENST00000558172 FAM161AQ3B820 660 aa13.07□□□□□ -0.32
LRRC28-204ENST00000558172 GRIPAP1Q4V328 841 aa13.07□□□□□ -0.32
LRRC28-204ENST00000558172 TAF7LQ5H9L4 462 aa13.07□□□□□ -0.32
LRRC28-204ENST00000558172 SOGA3Q5TF21 947 aa13.07□□□□□ -0.32
LRRC28-204ENST00000558172 CC2D2BQ6DHV5 1058 aa13.07□□□□□ -0.32
LRRC28-204ENST00000558172 PRPF40BQ6NWY9 871 aaKnown RBP13.07□□□□□ -0.32
LRRC28-204ENST00000558172 RPAP2Q8IXW5 612 aaPredicted RBP13.07□□□□□ -0.32
LRRC28-204ENST00000558172 CELF1Q92879 486 aaKnown RBP13.07□□□□□ -0.32
LRRC28-204ENST00000558172 BCS1LQ9Y276 419 aa13.07□□□□□ -0.32
LRRC28-204ENST00000558172 SRCAPQ6ZRS2 3230 aa13.06□□□□□ -0.32
LRRC28-204ENST00000558172 PPEF1O14829 653 aaPredicted RBP13.06□□□□□ -0.32
LRRC28-204ENST00000558172 SP8Q8IXZ3 490 aa13.06□□□□□ -0.32
LRRC28-204ENST00000558172 MPHOSPH8Q99549 860 aa13.06□□□□□ -0.32
LRRC28-204ENST00000558172 BSDC1Q9NW68 430 aaPredicted RBP13.06□□□□□ -0.32
LRRC28-204ENST00000558172 FER1L6Q2WGJ9 1857 aa13.06□□□□□ -0.32
LRRC28-204ENST00000558172 LRRC37AA6NMS7 1700 aa13.05□□□□□ -0.32
LRRC28-204ENST00000558172 SRGAP3O43295 1099 aa13.05□□□□□ -0.32
LRRC28-204ENST00000558172 C7orf43Q8WVR3 580 aa13.05□□□□□ -0.32
LRRC28-204ENST00000558172 C1orf115Q9H7X2 142 aa13.05□□□□□ -0.32
LRRC28-204ENST00000558172 FBXO3Q9UK99 471 aa13.05□□□□□ -0.32
LRRC28-204ENST00000558172 ATP6V0A2Q9Y487 856 aa13.05□□□□□ -0.32
LRRC28-204ENST00000558172 CCDC88AQ3V6T2 1871 aa13.04□□□□□ -0.32
LRRC28-204ENST00000558172 C21orf2O43822 256 aa13.04□□□□□ -0.32
LRRC28-204ENST00000558172 GRIN3BO60391 1043 aa13.04□□□□□ -0.32
LRRC28-204ENST00000558172 RFX5P48382 616 aaPredicted RBP13.04□□□□□ -0.32
LRRC28-204ENST00000558172 GPR162Q16538 588 aa13.04□□□□□ -0.32
LRRC28-204ENST00000558172 CEP85Q6P2H3 762 aa13.04□□□□□ -0.32
LRRC28-204ENST00000558172 LDHAL6AQ6ZMR3 332 aa13.04□□□□□ -0.32
LRRC28-204ENST00000558172 COPRSQ9NQ92 184 aa13.04□□□□□ -0.32
LRRC28-204ENST00000558172 HMMRO75330 724 aa13.03□□□□□ -0.32
LRRC28-204ENST00000558172 PTPN12Q05209 780 aaKnown RBP13.03□□□□□ -0.32
LRRC28-204ENST00000558172 CCDC93Q567U6 631 aa13.03□□□□□ -0.32
LRRC28-204ENST00000558172 RTKN2Q8IZC4 609 aa13.03□□□□□ -0.32
LRRC28-204ENST00000558172 PELP1Q8IZL8 1130 aaKnown RBP13.03□□□□□ -0.32
LRRC28-204ENST00000558172 SSH3Q8TE77 659 aa13.03□□□□□ -0.32
LRRC28-204ENST00000558172 ZNF594Q96JF6 807 aaPredicted RBP13.03□□□□□ -0.32
LRRC28-204ENST00000558172 CNNM1Q9NRU3 951 aa13.03□□□□□ -0.32
LRRC28-204ENST00000558172 WWC3Q9ULE0 1092 aa13.03□□□□□ -0.32
LRRC28-204ENST00000558172 COL4A1P02462 1669 aa13.02□□□□□ -0.32
LRRC28-204ENST00000558172 A0A1B0GUL6 1792 aa13.02□□□□□ -0.32
LRRC28-204ENST00000558172 SBF1O95248 1867 aa13.02□□□□□ -0.32
LRRC28-204ENST00000558172 PNMA6EA0A0J9YXQ4 647 aa13.02□□□□□ -0.33
LRRC28-204ENST00000558172 POLA2Q14181 598 aa13.02□□□□□ -0.33
LRRC28-204ENST00000558172 EXOC6Q8TAG9 804 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms