RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 CDAN1Q8IWY9 1227 aa6.93□□□□□ -1.3
SPG11-208ENST00000558155 NBPF15Q8N660 670 aa6.93□□□□□ -1.3
SPG11-208ENST00000558155 SUPT20HQ8NEM7 779 aa6.93□□□□□ -1.3
SPG11-208ENST00000558155 ZC3H15Q8WU90 426 aaKnown RBP6.93□□□□□ -1.3
SPG11-208ENST00000558155 GPRC5DQ9NZD1 345 aa6.93□□□□□ -1.3
SPG11-208ENST00000558155 TRIM35Q9UPQ4 493 aa6.93□□□□□ -1.3
SPG11-208ENST00000558155 PRAMEF22A3QJZ6 481 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 TCERG1O14776 1098 aaKnown RBP6.92□□□□□ -1.3
SPG11-208ENST00000558155 PPIP5K2O43314 1243 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 TNIP1Q15025 636 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 CC2D1BQ5T0F9 858 aaKnown RBP6.92□□□□□ -1.3
SPG11-208ENST00000558155 NUTM1Q86Y26 1132 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 MIER1Q8N108 512 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 NGEFQ8N5V2 710 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 PHACTR3Q96KR7 559 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 BCL2L13Q9BXK5 485 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 ZNF408Q9H9D4 720 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 PGAP2Q9UHJ9 254 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 ZNRF3Q9ULT6 936 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 KIF7Q2M1P5 1343 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 CEMIPQ8WUJ3 1361 aa6.92□□□□□ -1.3
SPG11-208ENST00000558155 BCORQ6W2J9 1755 aa6.91□□□□□ -1.3
SPG11-208ENST00000558155 H7C1D1 291 aa6.91□□□□□ -1.3
SPG11-208ENST00000558155 PPEF1O14829 653 aaPredicted RBP6.91□□□□□ -1.3
SPG11-208ENST00000558155 PER1O15534 1290 aaPredicted RBP6.91□□□□□ -1.3
SPG11-208ENST00000558155 HTATSF1O43719 755 aaKnown RBP6.91□□□□□ -1.3
SPG11-208ENST00000558155 CXCL9Q07325 125 aa6.91□□□□□ -1.3
SPG11-208ENST00000558155 TAF7Q15545 349 aaPredicted RBP6.91□□□□□ -1.3
SPG11-208ENST00000558155 KIF6Q6ZMV9 814 aa6.91□□□□□ -1.3
SPG11-208ENST00000558155 PPP1R42Q7Z4L9 355 aa6.91□□□□□ -1.3
SPG11-208ENST00000558155 CCDC102AQ96A19 550 aa6.91□□□□□ -1.3
SPG11-208ENST00000558155 NLRP3Q96P20 1036 aa6.91□□□□□ -1.3
SPG11-208ENST00000558155 GLIS2Q9BZE0 524 aaPredicted RBP6.91□□□□□ -1.3
SPG11-208ENST00000558155 NUDCQ9Y266 331 aa6.91□□□□□ -1.3
SPG11-208ENST00000558155 CLSPNQ9HAW4 1339 aa6.91□□□□□ -1.3
SPG11-208ENST00000558155 NPC1L1Q9UHC9 1359 aa6.91□□□□□ -1.3
SPG11-208ENST00000558155 THSD7BQ9C0I4 1608 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 SIPA1L3O60292 1781 aaPredicted RBP6.9□□□□□ -1.3
SPG11-208ENST00000558155 BBOX1O75936 387 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 SEC24BO95487 1268 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 PRKAR2BP31323 418 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 GMPSP49915 693 aaPredicted RBP6.9□□□□□ -1.3
SPG11-208ENST00000558155 HUNKP57058 714 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 TRIM26Q12899 539 aaPredicted RBP6.9□□□□□ -1.3
SPG11-208ENST00000558155 AOC3Q16853 763 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 SUSD4Q5VX71 490 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 MCM10Q7L590 875 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 USP48Q86UV5 1035 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 C2orf69Q8N8R5 385 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 CFAP53Q96M91 514 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 CNOT7Q9UIV1 285 aaKnown RBP6.9□□□□□ -1.3
SPG11-208ENST00000558155 RRP7AQ9Y3A4 280 aaKnown RBP6.9□□□□□ -1.3
SPG11-208ENST00000558155 ATP6V0A2Q9Y487 856 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 MAP3K15Q6ZN16 1313 aa6.9□□□□□ -1.3
SPG11-208ENST00000558155 LTBP1Q14766 1721 aa6.9□□□□□ -1.31
SPG11-208ENST00000558155 PDE4DIPQ5VU43 2346 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 ST18O60284 1047 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 GPTP24298 496 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 NUBP1P53384 320 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 HIRAP54198 1017 aaPredicted RBP6.89□□□□□ -1.31
SPG11-208ENST00000558155 CNGB1Q14028 1251 aaPredicted RBP6.89□□□□□ -1.31
SPG11-208ENST00000558155 IER5LQ5T953 404 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 RGMBQ6NW40 437 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 DPP8Q6V1X1 898 aaPredicted RBP6.89□□□□□ -1.31
SPG11-208ENST00000558155 IFNL1Q8IU54 200 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 SP8Q8IXZ3 490 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 ZNF34Q8IZ26 560 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 MPNDQ8N594 471 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 PNISRQ8TF01 805 aaKnown RBP6.89□□□□□ -1.31
SPG11-208ENST00000558155 RTFDC1Q9BY42 306 aaPredicted RBP6.89□□□□□ -1.31
SPG11-208ENST00000558155 SAGE1Q9NXZ1 904 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 CDHR2Q9BYE9 1310 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 SNED1Q8TER0 1413 aa6.89□□□□□ -1.31
SPG11-208ENST00000558155 POLR2AP24928 1970 aaKnown RBP6.88□□□□□ -1.31
SPG11-208ENST00000558155 NUP98P52948 1817 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 TRPA1O75762 1119 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 RAD17O75943 681 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 NEFMP07197 916 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 U2AF1L5P0DN76 240 aaPredicted RBP6.88□□□□□ -1.31
SPG11-208ENST00000558155 SOX10P56693 466 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 U2AF1Q01081 240 aaKnown RBP eCLIP6.88□□□□□ -1.31
SPG11-208ENST00000558155 KIF23Q02241 960 aaPredicted RBP6.88□□□□□ -1.31
SPG11-208ENST00000558155 KIAA2012Q0VF49 1180 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 PARP10Q53GL7 1025 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 SLC10A5Q5PT55 438 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 PRPF38BQ5VTL8 546 aaKnown RBP6.88□□□□□ -1.31
SPG11-208ENST00000558155 DPF2Q92785 391 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 ZIC5Q96T25 663 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 UTP14AQ9BVJ6 771 aaKnown RBP6.88□□□□□ -1.31
SPG11-208ENST00000558155 PCGF6Q9BYE7 350 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 RSPH6AQ9H0K4 717 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 GBA2Q9HCG7 927 aaPredicted RBP6.88□□□□□ -1.31
SPG11-208ENST00000558155 RNF186Q9NXI6 227 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 MIS18AQ9NYP9 233 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 PCDHB13Q9Y5F0 798 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 AKAP11Q9UKA4 1901 aa6.88□□□□□ -1.31
SPG11-208ENST00000558155 COL4A5P29400 1685 aa6.87□□□□□ -1.31
SPG11-208ENST00000558155 ABCC12Q96J65 1359 aa6.87□□□□□ -1.31
SPG11-208ENST00000558155 IBTKQ9P2D0 1353 aaPredicted RBP6.87□□□□□ -1.31
SPG11-208ENST00000558155 MYL6BP14649 208 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms