RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 PPEF1O14829 653 aaPredicted RBP18.1■□□□□ 0.49
USP3-205ENST00000557884 SEC31BQ9NQW1 1179 aa18.1■□□□□ 0.49
USP3-205ENST00000557884 DLEC1Q9Y238 1755 aa18.09■□□□□ 0.49
USP3-205ENST00000557884 DDX60Q8IY21 1712 aaKnown RBP18.09■□□□□ 0.49
USP3-205ENST00000557884 NBPF7P0C2Y1 421 aaPredicted RBP18.09■□□□□ 0.49
USP3-205ENST00000557884 GRAPQ13588 217 aa18.09■□□□□ 0.49
USP3-205ENST00000557884 GRAPLQ8TC17 118 aaPredicted RBP18.09■□□□□ 0.49
USP3-205ENST00000557884 C7orf43Q8WVR3 580 aa18.09■□□□□ 0.49
USP3-205ENST00000557884 SUCLG2Q96I99 432 aa18.09■□□□□ 0.49
USP3-205ENST00000557884 BRCA1P38398 1863 aaKnown RBP18.09■□□□□ 0.49
USP3-205ENST00000557884 RASSF7Q02833 373 aa18.08■□□□□ 0.48
USP3-205ENST00000557884 EPHA10Q5JZY3 1008 aa18.08■□□□□ 0.48
USP3-205ENST00000557884 PIAS4Q8N2W9 510 aaPredicted RBP18.08■□□□□ 0.48
USP3-205ENST00000557884 TTLL11Q8NHH1 800 aa18.08■□□□□ 0.48
USP3-205ENST00000557884 CELF1Q92879 486 aaKnown RBP18.08■□□□□ 0.48
USP3-205ENST00000557884 PLA2G12BQ9BX93 195 aa18.08■□□□□ 0.48
USP3-205ENST00000557884 USP44Q9H0E7 712 aa18.08■□□□□ 0.48
USP3-205ENST00000557884 GREM2Q9H772 168 aa18.08■□□□□ 0.48
USP3-205ENST00000557884 FOXO4P98177 505 aa18.07■□□□□ 0.48
USP3-205ENST00000557884 FAM161AQ3B820 660 aa18.07■□□□□ 0.48
USP3-205ENST00000557884 INTS3Q68E01 1043 aaKnown RBP18.07■□□□□ 0.48
USP3-205ENST00000557884 FTSJ3Q8IY81 847 aaKnown RBP18.07■□□□□ 0.48
USP3-205ENST00000557884 CHMP3Q9Y3E7 222 aa18.07■□□□□ 0.48
USP3-205ENST00000557884 UTYO14607 1347 aa18.06■□□□□ 0.48
USP3-205ENST00000557884 NFKBIEO00221 500 aa18.06■□□□□ 0.48
USP3-205ENST00000557884 PLIN1O60240 522 aa18.06■□□□□ 0.48
USP3-205ENST00000557884 CCDC93Q567U6 631 aa18.06■□□□□ 0.48
USP3-205ENST00000557884 TMEM57Q8N5G2 664 aa18.06■□□□□ 0.48
USP3-205ENST00000557884 SLX4Q8IY92 1834 aa18.06■□□□□ 0.48
USP3-205ENST00000557884 LAMB2P55268 1798 aa18.05■□□□□ 0.48
USP3-205ENST00000557884 BBOX1O75936 387 aa18.05■□□□□ 0.48
USP3-205ENST00000557884 RLBP1P12271 317 aa18.05■□□□□ 0.48
USP3-205ENST00000557884 SOGA3Q5TF21 947 aa18.05■□□□□ 0.48
USP3-205ENST00000557884 LMBR1LQ6UX01 489 aa18.05■□□□□ 0.48
USP3-205ENST00000557884 DZIP1LQ8IYY4 767 aaKnown RBP18.05■□□□□ 0.48
USP3-205ENST00000557884 KAZALD1Q96I82 304 aa18.05■□□□□ 0.48
USP3-205ENST00000557884 MEIS3Q99687 375 aa18.05■□□□□ 0.48
USP3-205ENST00000557884 ATP6V0A2Q9Y487 856 aa18.05■□□□□ 0.48
USP3-205ENST00000557884 COL4A1P02462 1669 aa18.04■□□□□ 0.48
USP3-205ENST00000557884 CSF1RP07333 972 aa18.04■□□□□ 0.48
USP3-205ENST00000557884 RPS8P62241 208 aaKnown RBP18.04■□□□□ 0.48
USP3-205ENST00000557884 PANK1Q8TE04 598 aa18.04■□□□□ 0.48
USP3-205ENST00000557884 BICC1Q9H694 974 aaKnown RBP18.04■□□□□ 0.48
USP3-205ENST00000557884 UBTFL1P0CB47 393 aaPredicted RBP18.03■□□□□ 0.48
USP3-205ENST00000557884 ITGA6P23229 1130 aa18.03■□□□□ 0.48
USP3-205ENST00000557884 CDC5LQ99459 802 aaKnown RBP18.03■□□□□ 0.48
USP3-205ENST00000557884 TMX4Q9H1E5 349 aaPredicted RBP18.03■□□□□ 0.48
USP3-205ENST00000557884 RTL9Q8NET4 1388 aa18.03■□□□□ 0.48
USP3-205ENST00000557884 ANKRD18AQ8IVF6 992 aa18.02■□□□□ 0.48
USP3-205ENST00000557884 ITPRIPQ8IWB1 547 aa18.02■□□□□ 0.48
USP3-205ENST00000557884 SP8Q8IXZ3 490 aa18.02■□□□□ 0.48
USP3-205ENST00000557884 TAOK3Q9H2K8 898 aa18.02■□□□□ 0.48
USP3-205ENST00000557884 ARFGEF1Q9Y6D6 1849 aa18.02■□□□□ 0.47
USP3-205ENST00000557884 PRELPP51888 382 aa18.01■□□□□ 0.47
USP3-205ENST00000557884 C9orf131Q5VYM1 1079 aa18.01■□□□□ 0.47
USP3-205ENST00000557884 CC2D2BQ6DHV5 1058 aa18.01■□□□□ 0.47
USP3-205ENST00000557884 RTKN2Q8IZC4 609 aa18.01■□□□□ 0.47
USP3-205ENST00000557884 ANKRD44Q8N8A2 993 aa18.01■□□□□ 0.47
USP3-205ENST00000557884 LRRFIP2Q9Y608 721 aaKnown RBP18.01■□□□□ 0.47
USP3-205ENST00000557884 CACNA1SQ13698 1873 aa18.01■□□□□ 0.47
USP3-205ENST00000557884 ANKRD18BA2A2Z9 1011 aa18■□□□□ 0.47
USP3-205ENST00000557884 FKBP4Q02790 459 aaKnown RBP eCLIP18■□□□□ 0.47
USP3-205ENST00000557884 IFIT5Q13325 482 aaKnown RBP18■□□□□ 0.47
USP3-205ENST00000557884 TMC4Q7Z404 712 aa18■□□□□ 0.47
USP3-205ENST00000557884 ZNF277Q9NRM2 450 aaPredicted RBP18■□□□□ 0.47
USP3-205ENST00000557884 RNF181Q9P0P0 153 aa18■□□□□ 0.47
USP3-205ENST00000557884 LMNB1P20700 586 aa17.99■□□□□ 0.47
USP3-205ENST00000557884 YY1P25490 414 aa17.99■□□□□ 0.47
USP3-205ENST00000557884 IGHMBP2P38935 993 aaKnown RBP17.99■□□□□ 0.47
USP3-205ENST00000557884 CCDC57Q2TAC2 916 aa17.99■□□□□ 0.47
USP3-205ENST00000557884 RABL6Q3YEC7 729 aaPredicted RBP17.99■□□□□ 0.47
USP3-205ENST00000557884 TAF7LQ5H9L4 462 aa17.99■□□□□ 0.47
USP3-205ENST00000557884 DPP8Q6V1X1 898 aaPredicted RBP17.99■□□□□ 0.47
USP3-205ENST00000557884 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.99■□□□□ 0.47
USP3-205ENST00000557884 ZNF594Q96JF6 807 aaPredicted RBP17.99■□□□□ 0.47
USP3-205ENST00000557884 SNED1Q8TER0 1413 aa17.98■□□□□ 0.47
USP3-205ENST00000557884 GNAI3P08754 354 aa17.98■□□□□ 0.47
USP3-205ENST00000557884 MS4A1P11836 297 aa17.98■□□□□ 0.47
USP3-205ENST00000557884 GPSM2P81274 684 aa17.98■□□□□ 0.47
USP3-205ENST00000557884 MPNDQ8N594 471 aa17.98■□□□□ 0.47
USP3-205ENST00000557884 MPHOSPH8Q99549 860 aa17.98■□□□□ 0.47
USP3-205ENST00000557884 LTBP3Q9NS15 1303 aa17.98■□□□□ 0.47
USP3-205ENST00000557884 C20orf194Q5TEA3 1177 aa17.97■□□□□ 0.47
USP3-205ENST00000557884 PSMD1Q99460 953 aa17.97■□□□□ 0.47
USP3-205ENST00000557884 NSFL1CQ9UNZ2 370 aaKnown RBP17.97■□□□□ 0.47
USP3-205ENST00000557884 TAF1P21675 1872 aa17.97■□□□□ 0.47
USP3-205ENST00000557884 GRIPAP1Q4V328 841 aa17.96■□□□□ 0.47
USP3-205ENST00000557884 BSDC1Q9NW68 430 aaPredicted RBP17.96■□□□□ 0.47
USP3-205ENST00000557884 ANKIB1Q9P2G1 1089 aa17.96■□□□□ 0.47
USP3-205ENST00000557884 COG6Q9Y2V7 657 aa17.96■□□□□ 0.47
USP3-205ENST00000557884 GNAI2P04899 355 aa17.95■□□□□ 0.46
USP3-205ENST00000557884 GPR101Q96P66 508 aaPredicted RBP17.95■□□□□ 0.46
USP3-205ENST00000557884 C1orf115Q9H7X2 142 aa17.95■□□□□ 0.46
USP3-205ENST00000557884 MINPP1Q9UNW1 487 aa17.95■□□□□ 0.46
USP3-205ENST00000557884 HDAC5Q9UQL6 1122 aa17.95■□□□□ 0.46
USP3-205ENST00000557884 C6orf229H3BNL8 230 aa17.94■□□□□ 0.46
USP3-205ENST00000557884 IARSP41252 1262 aaKnown RBP17.94■□□□□ 0.46
USP3-205ENST00000557884 RRP1P56182 461 aaKnown RBP17.94■□□□□ 0.46
USP3-205ENST00000557884 MVPQ14764 893 aaKnown RBP17.94■□□□□ 0.46
USP3-205ENST00000557884 KLHDC4Q8TBB5 520 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms