RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 CDHR2Q9BYE9 1310 aa17.54■□□□□ 0.4
VPS33B-206ENST00000557358 LAMB2P55268 1798 aa17.54■□□□□ 0.4
VPS33B-206ENST00000557358 DPP8Q6V1X1 898 aaPredicted RBP17.54■□□□□ 0.4
VPS33B-206ENST00000557358 MPNDQ8N594 471 aa17.54■□□□□ 0.4
VPS33B-206ENST00000557358 VPS33BQ9H267 617 aa17.54■□□□□ 0.4
VPS33B-206ENST00000557358 TIAM2Q8IVF5 1701 aa17.53■□□□□ 0.4
VPS33B-206ENST00000557358 IGKV5-2P06315 115 aa17.53■□□□□ 0.4
VPS33B-206ENST00000557358 CWF19L2Q2TBE0 894 aaKnown RBP17.53■□□□□ 0.4
VPS33B-206ENST00000557358 OLFM4Q6UX06 510 aa17.53■□□□□ 0.4
VPS33B-206ENST00000557358 LARGE2Q8N3Y3 721 aa17.53■□□□□ 0.4
VPS33B-206ENST00000557358 DDX60Q8IY21 1712 aaKnown RBP17.52■□□□□ 0.4
VPS33B-206ENST00000557358 VEGFAP15692 232 aaPredicted RBP17.52■□□□□ 0.4
VPS33B-206ENST00000557358 GCKRQ14397 625 aa17.52■□□□□ 0.4
VPS33B-206ENST00000557358 UBE3BQ7Z3V4 1068 aa17.52■□□□□ 0.4
VPS33B-206ENST00000557358 CDC5LQ99459 802 aaKnown RBP17.52■□□□□ 0.4
VPS33B-206ENST00000557358 PTPRCP08575 1304 aa17.51■□□□□ 0.39
VPS33B-206ENST00000557358 EIF6P56537 245 aaKnown RBP17.51■□□□□ 0.39
VPS33B-206ENST00000557358 RPS8P62241 208 aaKnown RBP17.51■□□□□ 0.39
VPS33B-206ENST00000557358 HNRNPUQ00839 825 aaKnown RBP eCLIP17.51■□□□□ 0.39
VPS33B-206ENST00000557358 ALDH1L2Q3SY69 923 aa17.51■□□□□ 0.39
VPS33B-206ENST00000557358 SLC4A10Q6U841 1118 aa17.51■□□□□ 0.39
VPS33B-206ENST00000557358 NIM1KQ8IY84 436 aa17.51■□□□□ 0.39
VPS33B-206ENST00000557358 CDCA7LQ96GN5 454 aa17.51■□□□□ 0.39
VPS33B-206ENST00000557358 RRAGCQ9HB90 399 aa17.51■□□□□ 0.39
VPS33B-206ENST00000557358 NMRK2Q9NPI5 230 aa17.51■□□□□ 0.39
VPS33B-206ENST00000557358 PPIP5K2O43314 1243 aa17.5■□□□□ 0.39
VPS33B-206ENST00000557358 TOMM70O94826 608 aa17.5■□□□□ 0.39
VPS33B-206ENST00000557358 PRELPP51888 382 aa17.5■□□□□ 0.39
VPS33B-206ENST00000557358 CTSWP56202 376 aa17.5■□□□□ 0.39
VPS33B-206ENST00000557358 ANKRD18AQ8IVF6 992 aa17.5■□□□□ 0.39
VPS33B-206ENST00000557358 JARID2Q92833 1246 aaPredicted RBP17.5■□□□□ 0.39
VPS33B-206ENST00000557358 SMC4Q9NTJ3 1288 aa17.5■□□□□ 0.39
VPS33B-206ENST00000557358 C9orf78Q9NZ63 289 aaPredicted RBP17.5■□□□□ 0.39
VPS33B-206ENST00000557358 IQCA1LA6NCM1 817 aa17.49■□□□□ 0.39
VPS33B-206ENST00000557358 F6X3S4 739 aa17.49■□□□□ 0.39
VPS33B-206ENST00000557358 H7C1W4 665 aa17.49■□□□□ 0.39
VPS33B-206ENST00000557358 KIF3CO14782 793 aa17.49■□□□□ 0.39
VPS33B-206ENST00000557358 ALDH1L1O75891 902 aa17.49■□□□□ 0.39
VPS33B-206ENST00000557358 SRCIN1Q9C0H9 1055 aa17.49■□□□□ 0.39
VPS33B-206ENST00000557358 MYH3P11055 1940 aa17.49■□□□□ 0.39
VPS33B-206ENST00000557358 CELF1Q92879 486 aaKnown RBP17.48■□□□□ 0.39
VPS33B-206ENST00000557358 CCDC85AQ96PX6 553 aaPredicted RBP17.48■□□□□ 0.39
VPS33B-206ENST00000557358 EYA3Q99504 573 aa17.48■□□□□ 0.39
VPS33B-206ENST00000557358 NSFL1CQ9UNZ2 370 aaKnown RBP17.48■□□□□ 0.39
VPS33B-206ENST00000557358 C6orf229H3BNL8 230 aa17.47■□□□□ 0.39
VPS33B-206ENST00000557358 IGHMBP2P38935 993 aaKnown RBP17.47■□□□□ 0.39
VPS33B-206ENST00000557358 BEND3Q5T5X7 828 aa17.47■□□□□ 0.39
VPS33B-206ENST00000557358 TRMT2AQ8IZ69 625 aaKnown RBP17.47■□□□□ 0.39
VPS33B-206ENST00000557358 MRPL50Q8N5N7 158 aaKnown RBP17.47■□□□□ 0.39
VPS33B-206ENST00000557358 RBM46Q8TBY0 533 aaKnown RBP17.47■□□□□ 0.39
VPS33B-206ENST00000557358 RTFDC1Q9BY42 306 aaPredicted RBP17.47■□□□□ 0.39
VPS33B-206ENST00000557358 ANKIB1Q9P2G1 1089 aa17.47■□□□□ 0.39
VPS33B-206ENST00000557358 G3V3G9 751 aa17.46■□□□□ 0.39
VPS33B-206ENST00000557358 DCAF8Q5TAQ9 597 aa17.46■□□□□ 0.39
VPS33B-206ENST00000557358 TTLL11Q8NHH1 800 aa17.46■□□□□ 0.39
VPS33B-206ENST00000557358 SSH1Q8WYL5 1049 aa17.46■□□□□ 0.39
VPS33B-206ENST00000557358 PLA2G12BQ9BX93 195 aa17.46■□□□□ 0.39
VPS33B-206ENST00000557358 TAF1P21675 1872 aa17.46■□□□□ 0.38
VPS33B-206ENST00000557358 FZD9O00144 591 aa17.45■□□□□ 0.38
VPS33B-206ENST00000557358 GRM8O00222 908 aa17.45■□□□□ 0.38
VPS33B-206ENST00000557358 DDNO94850 711 aaPredicted RBP17.45■□□□□ 0.38
VPS33B-206ENST00000557358 LMOD1P29536 600 aaPredicted RBP17.45■□□□□ 0.38
VPS33B-206ENST00000557358 AOC3Q16853 763 aa17.45■□□□□ 0.38
VPS33B-206ENST00000557358 GPC2Q8N158 579 aa17.45■□□□□ 0.38
VPS33B-206ENST00000557358 MPHOSPH8Q99549 860 aa17.45■□□□□ 0.38
VPS33B-206ENST00000557358 BCL2L13Q9BXK5 485 aa17.45■□□□□ 0.38
VPS33B-206ENST00000557358 SEC31BQ9NQW1 1179 aa17.45■□□□□ 0.38
VPS33B-206ENST00000557358 CHMP3Q9Y3E7 222 aa17.45■□□□□ 0.38
VPS33B-206ENST00000557358 KIAA2012Q0VF49 1180 aa17.44■□□□□ 0.38
VPS33B-206ENST00000557358 FSTL1Q12841 308 aa17.44■□□□□ 0.38
VPS33B-206ENST00000557358 WASHC4Q2M389 1173 aa17.44■□□□□ 0.38
VPS33B-206ENST00000557358 SMC1BQ8NDV3 1235 aa17.44■□□□□ 0.38
VPS33B-206ENST00000557358 GGA1Q9UJY5 639 aa17.44■□□□□ 0.38
VPS33B-206ENST00000557358 SNED1Q8TER0 1413 aa17.44■□□□□ 0.38
VPS33B-206ENST00000557358 RTL9Q8NET4 1388 aa17.43■□□□□ 0.38
VPS33B-206ENST00000557358 ANKRD18BA2A2Z9 1011 aa17.43■□□□□ 0.38
VPS33B-206ENST00000557358 TAF7LQ5H9L4 462 aa17.43■□□□□ 0.38
VPS33B-206ENST00000557358 ZC3H12CQ9C0D7 883 aaKnown RBP17.43■□□□□ 0.38
VPS33B-206ENST00000557358 GREM2Q9H772 168 aa17.43■□□□□ 0.38
VPS33B-206ENST00000557358 ZNRF3Q9ULT6 936 aa17.43■□□□□ 0.38
VPS33B-206ENST00000557358 GJA3Q9Y6H8 435 aa17.43■□□□□ 0.38
VPS33B-206ENST00000557358 WDR90Q96KV7 1748 aa17.43■□□□□ 0.38
VPS33B-206ENST00000557358 IFIT5Q13325 482 aaKnown RBP17.42■□□□□ 0.38
VPS33B-206ENST00000557358 TNIP1Q15025 636 aa17.42■□□□□ 0.38
VPS33B-206ENST00000557358 L3MBTL3Q96JM7 780 aaPredicted RBP17.42■□□□□ 0.38
VPS33B-206ENST00000557358 API5Q9BZZ5 524 aaKnown RBP17.42■□□□□ 0.38
VPS33B-206ENST00000557358 BSDC1Q9NW68 430 aaPredicted RBP17.42■□□□□ 0.38
VPS33B-206ENST00000557358 HACL1Q9UJ83 578 aa17.42■□□□□ 0.38
VPS33B-206ENST00000557358 HDAC5Q9UQL6 1122 aa17.42■□□□□ 0.38
VPS33B-206ENST00000557358 XDHP47989 1333 aa17.42■□□□□ 0.38
VPS33B-206ENST00000557358 KIF16BQ96L93 1317 aa17.42■□□□□ 0.38
VPS33B-206ENST00000557358 ZNF541Q9H0D2 1346 aa17.42■□□□□ 0.38
VPS33B-206ENST00000557358 IPO8O15397 1037 aaKnown RBP17.41■□□□□ 0.38
VPS33B-206ENST00000557358 UFL1O94874 794 aa17.41■□□□□ 0.38
VPS33B-206ENST00000557358 ITGA6P23229 1130 aa17.41■□□□□ 0.38
VPS33B-206ENST00000557358 ATP2B4P23634 1241 aa17.41■□□□□ 0.38
VPS33B-206ENST00000557358 GPSM2P81274 684 aa17.41■□□□□ 0.38
VPS33B-206ENST00000557358 CCDC57Q2TAC2 916 aa17.41■□□□□ 0.38
VPS33B-206ENST00000557358 PODXL2Q9NZ53 605 aa17.41■□□□□ 0.38
VPS33B-206ENST00000557358 LRRC37AA6NMS7 1700 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms