RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 CEP126Q9P2H0 1117 aa7.15□□□□□ -1.26
SYNE2-225ENST00000557060 NAP1L2Q9ULW6 460 aaPredicted RBP7.15□□□□□ -1.26
SYNE2-225ENST00000557060 AK9Q5TCS8 1911 aa7.15□□□□□ -1.27
SYNE2-225ENST00000557060 IRS4O14654 1257 aaPredicted RBP7.15□□□□□ -1.27
SYNE2-225ENST00000557060 CRKLP46109 303 aaKnown RBP7.15□□□□□ -1.27
SYNE2-225ENST00000557060 SNX14Q9Y5W7 946 aa7.15□□□□□ -1.27
SYNE2-225ENST00000557060 CRYBG1Q9Y4K1 1723 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 MAP3K15Q6ZN16 1313 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 ITGA6P23229 1130 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 ITPK1Q13572 414 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 METTL24Q5JXM2 366 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 ATG9AQ7Z3C6 839 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 IFNLR1Q8IU57 520 aaPredicted RBP7.14□□□□□ -1.27
SYNE2-225ENST00000557060 LSG1Q9H089 658 aaKnown RBP7.14□□□□□ -1.27
SYNE2-225ENST00000557060 RBM8AQ9Y5S9 174 aaKnown RBP7.14□□□□□ -1.27
SYNE2-225ENST00000557060 SIPA1L3O60292 1781 aaPredicted RBP7.14□□□□□ -1.27
SYNE2-225ENST00000557060 RAD50Q92878 1312 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 NPHP1O15259 732 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 TRAK2O60296 914 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 GTF2E1P29083 439 aaPredicted RBP7.14□□□□□ -1.27
SYNE2-225ENST00000557060 STK3Q13188 491 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 RABL6Q3YEC7 729 aaPredicted RBP7.14□□□□□ -1.27
SYNE2-225ENST00000557060 GIGYF2Q6Y7W6 1299 aaKnown RBP7.14□□□□□ -1.27
SYNE2-225ENST00000557060 NLRP10Q86W26 655 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 TEX13AQ9BXU3 409 aaPredicted RBP7.14□□□□□ -1.27
SYNE2-225ENST00000557060 LRRC2Q9BYS8 371 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 EYA2O00167 538 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 PHF14O94880 888 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 IFIT1P09914 478 aaKnown RBP7.14□□□□□ -1.27
SYNE2-225ENST00000557060 HSPA4P34932 840 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 WASHC4Q2M389 1173 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 NECAB1Q8N987 351 aa7.14□□□□□ -1.27
SYNE2-225ENST00000557060 IQSEC3Q9UPP2 1182 aaPredicted RBP7.14□□□□□ -1.27
SYNE2-225ENST00000557060 NIP7Q9Y221 180 aaKnown RBP eCLIP7.14□□□□□ -1.27
SYNE2-225ENST00000557060 BCL9O00512 1426 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 AOX1Q06278 1338 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 KCPQ6ZWJ8 1503 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 MRC1P22897 1456 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 TAF5LO75529 589 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 ZKSCAN1P17029 563 aaPredicted RBP7.13□□□□□ -1.27
SYNE2-225ENST00000557060 AK2P54819 239 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 FGD1P98174 961 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 ZBTB38Q8NAP3 1195 aaPredicted RBP7.13□□□□□ -1.27
SYNE2-225ENST00000557060 GBP4Q96PP9 640 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 GDPD2Q9HCC8 539 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 USP21Q9UK80 565 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 ERBB4Q15303 1308 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 EIF5BO60841 1220 aaKnown RBP7.13□□□□□ -1.27
SYNE2-225ENST00000557060 PRKCSHP14314 528 aaPredicted RBP7.13□□□□□ -1.27
SYNE2-225ENST00000557060 TTC39AQ5SRH9 613 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 ISCA1Q9BUE6 129 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 SEC31BQ9NQW1 1179 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 BRPF3Q9ULD4 1205 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 UBN2Q6ZU65 1347 aa7.13□□□□□ -1.27
SYNE2-225ENST00000557060 IL15P40933 162 aaPredicted RBP7.12□□□□□ -1.27
SYNE2-225ENST00000557060 FOSBP53539 338 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 SCARF1Q14162 830 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 RAB3GAP1Q15042 981 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 VPS53Q5VIR6 699 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 CHST3Q7LGC8 479 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 PKD1L3Q7Z443 1732 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 CCDC83Q8IWF9 413 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 STK11IPQ8N1F8 1099 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 CCDC87Q9NVE4 849 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 PARP4Q9UKK3 1724 aaKnown RBP7.12□□□□□ -1.27
SYNE2-225ENST00000557060 SPATA31A5Q5VU36 1347 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 CCDC171Q6TFL3 1326 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 SPATA31A7Q8IWB4 1347 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 A0A0G2JLW4 131 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 LARGE1O95461 756 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 HAND2P61296 217 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 SUSD4Q5VX71 490 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 PAG1Q9NWQ8 432 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 PALLDQ8WX93 1383 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 PRPF40AO75400 957 aaKnown RBP7.12□□□□□ -1.27
SYNE2-225ENST00000557060 ATP5JP18859 108 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 CREB3L3Q68CJ9 461 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 VSIG10Q8N0Z9 540 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 TTLL11Q8NHH1 800 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 XAGE2Q96GT9 111 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 PDRG1Q9NUG6 133 aa7.12□□□□□ -1.27
SYNE2-225ENST00000557060 NHSL1Q5SYE7 1610 aa7.11□□□□□ -1.27
SYNE2-225ENST00000557060 ABCA3Q99758 1704 aa7.11□□□□□ -1.27
SYNE2-225ENST00000557060 ANKRD18BA2A2Z9 1011 aa7.11□□□□□ -1.27
SYNE2-225ENST00000557060 WTIPA6NIX2 430 aaPredicted RBP7.11□□□□□ -1.27
SYNE2-225ENST00000557060 IDH1O75874 414 aaKnown RBP7.11□□□□□ -1.27
SYNE2-225ENST00000557060 PCCAP05165 728 aaPredicted RBP7.11□□□□□ -1.27
SYNE2-225ENST00000557060 INTS5Q6P9B9 1019 aaKnown RBP7.11□□□□□ -1.27
SYNE2-225ENST00000557060 MPHOSPH8Q99549 860 aa7.11□□□□□ -1.27
SYNE2-225ENST00000557060 DDX49Q9Y6V7 483 aaKnown RBP7.11□□□□□ -1.27
SYNE2-225ENST00000557060 ADAMTS7Q9UKP4 1686 aa7.11□□□□□ -1.27
SYNE2-225ENST00000557060 AFDNP55196 1824 aaKnown RBP7.11□□□□□ -1.27
SYNE2-225ENST00000557060 BAG4O95429 457 aaKnown RBP7.11□□□□□ -1.27
SYNE2-225ENST00000557060 CTSWP56202 376 aa7.11□□□□□ -1.27
SYNE2-225ENST00000557060 CCDC158Q5M9N0 1113 aa7.11□□□□□ -1.27
SYNE2-225ENST00000557060 RUFY3Q7L099 469 aa7.11□□□□□ -1.27
SYNE2-225ENST00000557060 CYP46A1Q9Y6A2 500 aa7.11□□□□□ -1.27
SYNE2-225ENST00000557060 GOLGA6L22H0YM25 854 aa7.1□□□□□ -1.27
SYNE2-225ENST00000557060 HSP90B1P14625 803 aaKnown RBP7.1□□□□□ -1.27
SYNE2-225ENST00000557060 DDIT3P35638 169 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms