RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	CD109	Q6YHK3	1445 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	PI4KAP2	A4QPH2	592 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	RPS6KB1	P23443	525 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	DNA2	P51530	1060 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	LRMP	Q12912	555 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	HSP90AB2P	Q58FF8	381 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	PI4KAP1	Q8N8J0	262 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	PLCD4	Q9BRC7	762 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	PPP2R3A	Q06190	1150 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	IDI1	Q13907	227 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	RNF187	Q5TA31	235 aa	Predicted RBP	5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	DDX46	Q7L014	1031 aa	Known RBP	5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	C10orf67	Q8IYJ2	551 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	SLC52A1	Q9NWF4	448 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	MAP3K4	Q9Y6R4	1608 aa		5.77	□□□□□ -1.49
SYNE2-223	ENST00000557005	RGS12	O14924	1447 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	IFIT1	P09914	478 aa	Known RBP	5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	PIP4K2A	P48426	406 aa	Predicted RBP	5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	GIMAP7	Q8NHV1	300 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	ZNHIT6	Q9NWK9	470 aa	Known RBP	5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	ACE	P12821	1306 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	GOLGA8A	A7E2F4	631 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	HMGB1	P09429	215 aa	Known RBP	5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	RHOXF2B	P0C7M4	288 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	RHOXF2	Q9BQY4	288 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	MRVI1	Q9Y6F6	885 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	GOLGA6L10	A6NI86	522 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	POTEB2	H3BUK9	544 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	ODF2	Q5BJF6	829 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	IQCE	Q6IPM2	695 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	CCDC82	Q8N4S0	544 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	MRPS27	Q92552	414 aa	Known RBP	5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	GOLGA1	Q92805	767 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	RBM33	Q96EV2	1170 aa	Known RBP	5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	CAPZA3	Q96KX2	299 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	FAM227B	Q96M60	508 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	UTP14A	Q9BVJ6	771 aa	Known RBP	5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	HMG20B	Q9P0W2	317 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	TTC21B	Q7Z4L5	1316 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	ZCCHC11	Q5TAX3	1644 aa	Known RBP	5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	AMOTL1	Q8IY63	956 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005	TRIM22	Q8IYM9	498 aa		5.76	□□□□□ -1.49
SYNE2-223	ENST00000557005		A0A1B0GVL5	298 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	PTPDC1	A2A3K4	754 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	TTC31	Q49AM3	519 aa	Predicted RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	ERO1A	Q96HE7	468 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	BICC1	Q9H694	974 aa	Known RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	CEP131	Q9UPN4	1083 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	YTHDC2	Q9H6S0	1430 aa	Known RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	TRH	P20396	242 aa	Predicted RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	CDR1	P51861	262 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	IRX3	P78415	501 aa	Predicted RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	TFCP2	Q12800	502 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	ME3	Q16798	604 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	CYB5RL	Q6IPT4	315 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	CDK5RAP3	Q96JB5	506 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	SLC26A8	Q96RN1	970 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	LZTFL1	Q9NQ48	299 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	BCCIP	Q9P287	314 aa	Known RBP eCLIP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	CTNNA3	Q9UI47	895 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	USP16	Q9Y5T5	823 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	IDH1	O75874	414 aa	Known RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	SEC31A	O94979	1220 aa	Known RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	OAS2	P29728	719 aa	Known RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	TXLNA	P40222	546 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	MATR3	P43243	847 aa	Known RBP eCLIP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	TDO2	P48775	406 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	PTH1R	Q03431	593 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	MCM6	Q14566	821 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	CCDC57	Q2TAC2	916 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	UTP14C	Q5TAP6	766 aa	Known RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	CRACR2A	Q9BSW2	395 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	IQSEC2	Q5JU85	1478 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	SOS1	Q07889	1333 aa	Predicted RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	ATP5J2-PTCD1	G3V325	749 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	PTCD1	O75127	700 aa	Known RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	NR1I2	O75469	434 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	PDIA4	P13667	645 aa	Known RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	SYK	P43405	635 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	AFM	P43652	599 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	EIF5	P55010	431 aa	Known RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	GOLGA8F	Q08AF8	430 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	GOLGA8DP	Q0D2H9	430 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	CWF19L2	Q2TBE0	894 aa	Known RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	TICAM2	Q86XR7	235 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	SLC26A6	Q9BXS9	759 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	NDUFB9	Q9Y6M9	179 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	IQGAP1	P46940	1657 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	KIF24	Q5T7B8	1368 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	TAT	P17735	454 aa	Predicted RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	RXRA	P19793	462 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	LMOD1	P29536	600 aa	Predicted RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	PTPN21	Q16825	1174 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	LEO1	Q8WVC0	666 aa	Predicted RBP	5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	WASF1	Q92558	559 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	CEP89	Q96ST8	783 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	GBP3	Q9H0R5	595 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	SLC12A7	Q9Y666	1083 aa		5.75	□□□□□ -1.49
SYNE2-223	ENST00000557005	PLA2R1	Q13018	1463 aa		5.74	□□□□□ -1.49

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