RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 TSGA10IPQ3SY00 556 aa4.38□□□□□ -1.71
SLIRP-208ENST00000556956 HDGFL1Q5TGJ6 251 aa4.38□□□□□ -1.71
SLIRP-208ENST00000556956 TRIM50Q86XT4 487 aa4.38□□□□□ -1.71
SLIRP-208ENST00000556956 MRPL18Q9H0U6 180 aaKnown RBP4.38□□□□□ -1.71
SLIRP-208ENST00000556956 RBM19Q9Y4C8 960 aaKnown RBP4.38□□□□□ -1.71
SLIRP-208ENST00000556956 PARP3Q9Y6F1 533 aa4.38□□□□□ -1.71
SLIRP-208ENST00000556956 CENPBP07199 599 aaPredicted RBP4.37□□□□□ -1.71
SLIRP-208ENST00000556956 ATP1A2P50993 1020 aa4.37□□□□□ -1.71
SLIRP-208ENST00000556956 GDF10P55107 478 aa4.37□□□□□ -1.71
SLIRP-208ENST00000556956 PSME1Q06323 249 aa4.37□□□□□ -1.71
SLIRP-208ENST00000556956 MSMPQ1L6U9 139 aa4.37□□□□□ -1.71
SLIRP-208ENST00000556956 POM121Q96HA1 1249 aa4.37□□□□□ -1.71
SLIRP-208ENST00000556956 DNAJB12Q9NXW2 375 aaKnown RBP4.37□□□□□ -1.71
SLIRP-208ENST00000556956 ACIN1Q9UKV3 1341 aaKnown RBP4.37□□□□□ -1.71
SLIRP-208ENST00000556956 A6NJR5 290 aa4.36□□□□□ -1.71
SLIRP-208ENST00000556956 SMTNP53814 917 aa4.36□□□□□ -1.71
SLIRP-208ENST00000556956 ECM1Q16610 540 aa4.36□□□□□ -1.71
SLIRP-208ENST00000556956 PROSER2Q86WR7 435 aaPredicted RBP4.36□□□□□ -1.71
SLIRP-208ENST00000556956 WFDC8Q8IUA0 241 aa4.36□□□□□ -1.71
SLIRP-208ENST00000556956 FBXL18Q96ME1 805 aa4.36□□□□□ -1.71
SLIRP-208ENST00000556956 SLC4A9Q96Q91 983 aa4.36□□□□□ -1.71
SLIRP-208ENST00000556956 IQSEC3Q9UPP2 1182 aaPredicted RBP4.36□□□□□ -1.71
SLIRP-208ENST00000556956 CDK2AP1O14519 115 aa4.35□□□□□ -1.71
SLIRP-208ENST00000556956 SCNN1DP51172 638 aa4.35□□□□□ -1.71
SLIRP-208ENST00000556956 NCOA4Q13772 614 aa4.35□□□□□ -1.71
SLIRP-208ENST00000556956 A6NJY4 79 aa4.34□□□□□ -1.71
SLIRP-208ENST00000556956 USP17L5A8MUK1 530 aa4.34□□□□□ -1.71
SLIRP-208ENST00000556956 WDR64B1ANS9 1081 aa4.34□□□□□ -1.71
SLIRP-208ENST00000556956 ATP9BO43861 1147 aa4.34□□□□□ -1.71
SLIRP-208ENST00000556956 PRNPP04156 253 aa4.34□□□□□ -1.71
SLIRP-208ENST00000556956 GRNP28799 593 aaKnown RBP4.34□□□□□ -1.71
SLIRP-208ENST00000556956 GTF2IP78347 998 aa4.34□□□□□ -1.71
SLIRP-208ENST00000556956 PLEKHM2Q8IWE5 1019 aa4.34□□□□□ -1.71
SLIRP-208ENST00000556956 CALR3Q96L12 384 aaKnown RBP4.34□□□□□ -1.71
SLIRP-208ENST00000556956 LPIN3Q9BQK8 851 aa4.34□□□□□ -1.71
SLIRP-208ENST00000556956 RAPGEFL1Q9UHV5 662 aa4.34□□□□□ -1.71
SLIRP-208ENST00000556956 CHMP3Q9Y3E7 222 aa4.34□□□□□ -1.71
SLIRP-208ENST00000556956 PCDHGA11Q9Y5H2 935 aa4.34□□□□□ -1.71
SLIRP-208ENST00000556956 PALM3A6NDB9 673 aaPredicted RBP4.33□□□□□ -1.72
SLIRP-208ENST00000556956 PIK3CDO00329 1044 aa4.33□□□□□ -1.72
SLIRP-208ENST00000556956 MESP2Q0VG99 397 aa4.33□□□□□ -1.72
SLIRP-208ENST00000556956 VSIG10LQ86VR7 867 aa4.33□□□□□ -1.72
SLIRP-208ENST00000556956 LARGE2Q8N3Y3 721 aa4.33□□□□□ -1.72
SLIRP-208ENST00000556956 C7orf43Q8WVR3 580 aa4.33□□□□□ -1.72
SLIRP-208ENST00000556956 CLUAP1Q96AJ1 413 aa4.33□□□□□ -1.72
SLIRP-208ENST00000556956 SLC38A3Q99624 504 aa4.33□□□□□ -1.72
SLIRP-208ENST00000556956 BRD7Q9NPI1 651 aa4.33□□□□□ -1.72
SLIRP-208ENST00000556956 CABP1Q9NZU7 370 aa4.33□□□□□ -1.72
SLIRP-208ENST00000556956 PIM2Q9P1W9 311 aa4.33□□□□□ -1.72
SLIRP-208ENST00000556956 SERTAD1Q9UHV2 236 aa4.33□□□□□ -1.72
SLIRP-208ENST00000556956 POM121CA8CG34 1229 aa4.32□□□□□ -1.72
SLIRP-208ENST00000556956 ZSCAN22P10073 491 aaPredicted RBP4.32□□□□□ -1.72
SLIRP-208ENST00000556956 CPB1P15086 417 aa4.32□□□□□ -1.72
SLIRP-208ENST00000556956 MTFR1Q15390 333 aa4.32□□□□□ -1.72
SLIRP-208ENST00000556956 CCDC102BQ68D86 513 aa4.32□□□□□ -1.72
SLIRP-208ENST00000556956 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.32□□□□□ -1.72
SLIRP-208ENST00000556956 FAM35AQ86V20 835 aa4.32□□□□□ -1.72
SLIRP-208ENST00000556956 LRRC56Q8IYG6 542 aaPredicted RBP4.32□□□□□ -1.72
SLIRP-208ENST00000556956 DEPDC4Q8N2C3 294 aa4.32□□□□□ -1.72
SLIRP-208ENST00000556956 FNBP4Q8N3X1 1017 aaPredicted RBP4.32□□□□□ -1.72
SLIRP-208ENST00000556956 GLMNQ92990 594 aa4.32□□□□□ -1.72
SLIRP-208ENST00000556956 UTP4Q969X6 686 aaKnown RBP4.32□□□□□ -1.72
SLIRP-208ENST00000556956 TOX2Q96NM4 488 aa4.32□□□□□ -1.72
SLIRP-208ENST00000556956 NEUROD4Q9HD90 331 aa4.32□□□□□ -1.72
SLIRP-208ENST00000556956 MKRN1Q9UHC7 482 aaKnown RBP4.32□□□□□ -1.72
SLIRP-208ENST00000556956 USP17L3A6NCW0 530 aa4.31□□□□□ -1.72
SLIRP-208ENST00000556956 USP17L4A6NCW7 530 aa4.31□□□□□ -1.72
SLIRP-208ENST00000556956 TMEM229AB2RXF0 380 aa4.31□□□□□ -1.72
SLIRP-208ENST00000556956 M0R2N6 131 aa4.31□□□□□ -1.72
SLIRP-208ENST00000556956 KCNQ4P56696 695 aa4.31□□□□□ -1.72
SLIRP-208ENST00000556956 LARP1Q6PKG0 1096 aaKnown RBP4.31□□□□□ -1.72
SLIRP-208ENST00000556956 USP17L2Q6R6M4 530 aa4.31□□□□□ -1.72
SLIRP-208ENST00000556956 USP17L1Q7RTZ2 530 aa4.31□□□□□ -1.72
SLIRP-208ENST00000556956 SIAH1Q8IUQ4 282 aa4.31□□□□□ -1.72
SLIRP-208ENST00000556956 PAK6Q9NQU5 681 aaPredicted RBP4.31□□□□□ -1.72
SLIRP-208ENST00000556956 SCHIP1Q9P0W5 487 aaPredicted RBP4.31□□□□□ -1.72
SLIRP-208ENST00000556956 TFIP11Q9UBB9 837 aaKnown RBP4.31□□□□□ -1.72
SLIRP-208ENST00000556956 KCNH4Q9UQ05 1017 aa4.31□□□□□ -1.72
SLIRP-208ENST00000556956 INHBBP09529 407 aa4.3□□□□□ -1.72
SLIRP-208ENST00000556956 RASA1P20936 1047 aa4.3□□□□□ -1.72
SLIRP-208ENST00000556956 CTSWP56202 376 aa4.3□□□□□ -1.72
SLIRP-208ENST00000556956 PERM1Q5SV97 790 aa4.3□□□□□ -1.72
SLIRP-208ENST00000556956 OGFOD1Q8N543 542 aa4.3□□□□□ -1.72
SLIRP-208ENST00000556956 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.3□□□□□ -1.72
SLIRP-208ENST00000556956 TPCN2Q8NHX9 752 aa4.3□□□□□ -1.72
SLIRP-208ENST00000556956 GAS2L2Q8NHY3 880 aa4.3□□□□□ -1.72
SLIRP-208ENST00000556956 ZDHHC1Q8WTX9 485 aa4.3□□□□□ -1.72
SLIRP-208ENST00000556956 COL26A1Q96A83 441 aa4.3□□□□□ -1.72
SLIRP-208ENST00000556956 CEP63Q96MT8 703 aa4.3□□□□□ -1.72
SLIRP-208ENST00000556956 ZNF358Q9NW07 568 aa4.3□□□□□ -1.72
SLIRP-208ENST00000556956 GPC6Q9Y625 555 aaPredicted RBP4.3□□□□□ -1.72
SLIRP-208ENST00000556956 EML1O00423 815 aa4.29□□□□□ -1.72
SLIRP-208ENST00000556956 ZBTB7BO15156 539 aaPredicted RBP4.29□□□□□ -1.72
SLIRP-208ENST00000556956 KRTAP10-2P60368 255 aa4.29□□□□□ -1.72
SLIRP-208ENST00000556956 TEAD4Q15561 434 aa4.29□□□□□ -1.72
SLIRP-208ENST00000556956 DBX2Q6ZNG2 339 aa4.29□□□□□ -1.72
SLIRP-208ENST00000556956 ZSCAN18Q8TBC5 510 aaPredicted RBP4.29□□□□□ -1.72
SLIRP-208ENST00000556956 ADAMTS19Q8TE59 1207 aa4.29□□□□□ -1.72
SLIRP-208ENST00000556956 FAM46AQ96IP4 442 aaKnown RBP4.29□□□□□ -1.72
SLIRP-208ENST00000556956 PPP1R12CQ9BZL4 782 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms