RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 HCLS1P14317 486 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-223ENST00000556689 KIAA2012Q0VF49 1180 aa16.64■□□□□ 0.25
SHMT2-223ENST00000556689 DDX46Q7L014 1031 aaKnown RBP16.64■□□□□ 0.25
SHMT2-223ENST00000556689 CDC37L1Q7L3B6 337 aa16.64■□□□□ 0.25
SHMT2-223ENST00000556689 GLIS2Q9BZE0 524 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-223ENST00000556689 ANXA1P04083 346 aa16.63■□□□□ 0.25
SHMT2-223ENST00000556689 RGS19P49795 217 aa16.63■□□□□ 0.25
SHMT2-223ENST00000556689 HIRAP54198 1017 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-223ENST00000556689 MLLT1Q03111 559 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-223ENST00000556689 AIMP1Q12904 312 aaKnown RBP16.63■□□□□ 0.25
SHMT2-223ENST00000556689 PROSER3Q2NL68 480 aa16.63■□□□□ 0.25
SHMT2-223ENST00000556689 COPS6Q7L5N1 327 aa16.63■□□□□ 0.25
SHMT2-223ENST00000556689 NLRP10Q86W26 655 aa16.63■□□□□ 0.25
SHMT2-223ENST00000556689 ZNF408Q9H9D4 720 aa16.63■□□□□ 0.25
SHMT2-223ENST00000556689 BABAM1Q9NWV8 329 aa16.63■□□□□ 0.25
SHMT2-223ENST00000556689 TRMT112Q9UI30 125 aaKnown RBP16.63■□□□□ 0.25
SHMT2-223ENST00000556689 CNOT7Q9UIV1 285 aaKnown RBP16.63■□□□□ 0.25
SHMT2-223ENST00000556689 CDHR2Q9BYE9 1310 aa16.63■□□□□ 0.25
SHMT2-223ENST00000556689 H7C1D1 291 aa16.62■□□□□ 0.25
SHMT2-223ENST00000556689 BRPF1P55201 1214 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-223ENST00000556689 RIPK4P57078 832 aa16.62■□□□□ 0.25
SHMT2-223ENST00000556689 TCIRG1Q13488 830 aa16.62■□□□□ 0.25
SHMT2-223ENST00000556689 GRAPQ13588 217 aa16.62■□□□□ 0.25
SHMT2-223ENST00000556689 GRAPLQ8TC17 118 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-223ENST00000556689 KDM3BQ7LBC6 1761 aa16.61■□□□□ 0.25
SHMT2-223ENST00000556689 TMC4Q7Z404 712 aa16.61■□□□□ 0.25
SHMT2-223ENST00000556689 XAGE3Q8WTP9 111 aa16.61■□□□□ 0.25
SHMT2-223ENST00000556689 NECTIN2Q92692 538 aa16.61■□□□□ 0.25
SHMT2-223ENST00000556689 SH3TC1Q8TE82 1336 aa16.61■□□□□ 0.25
SHMT2-223ENST00000556689 TRPM4Q8TD43 1214 aa16.6■□□□□ 0.25
SHMT2-223ENST00000556689 YDJCA8MPS7 323 aa16.59■□□□□ 0.25
SHMT2-223ENST00000556689 SLC34A2O95436 690 aa16.59■□□□□ 0.25
SHMT2-223ENST00000556689 USP48Q86UV5 1035 aa16.59■□□□□ 0.25
SHMT2-223ENST00000556689 LMOD3Q0VAK6 560 aa16.58■□□□□ 0.24
SHMT2-223ENST00000556689 WASHC4Q2M389 1173 aa16.58■□□□□ 0.24
SHMT2-223ENST00000556689 MICALL2Q8IY33 904 aa16.58■□□□□ 0.24
SHMT2-223ENST00000556689 DPF2Q92785 391 aa16.58■□□□□ 0.24
SHMT2-223ENST00000556689 MCOLN1Q9GZU1 580 aa16.58■□□□□ 0.24
SHMT2-223ENST00000556689 ZBTB12Q9Y330 459 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-223ENST00000556689 TRPM7Q96QT4 1865 aa16.58■□□□□ 0.24
SHMT2-223ENST00000556689 THSD7BQ9C0I4 1608 aa16.57■□□□□ 0.24
SHMT2-223ENST00000556689 SHTN1A0MZ66 631 aa16.57■□□□□ 0.24
SHMT2-223ENST00000556689 TMPOP42166 694 aaKnown RBP16.57■□□□□ 0.24
SHMT2-223ENST00000556689 NOGQ13253 232 aa16.57■□□□□ 0.24
SHMT2-223ENST00000556689 CFAP44Q96MT7 982 aa16.57■□□□□ 0.24
SHMT2-223ENST00000556689 DLG5Q8TDM6 1919 aa16.57■□□□□ 0.24
SHMT2-223ENST00000556689 HUNKP57058 714 aa16.56■□□□□ 0.24
SHMT2-223ENST00000556689 SAMD7Q7Z3H4 446 aa16.56■□□□□ 0.24
SHMT2-223ENST00000556689 NSFL1CQ9UNZ2 370 aaKnown RBP16.56■□□□□ 0.24
SHMT2-223ENST00000556689 PSMD14O00487 310 aa16.55■□□□□ 0.24
SHMT2-223ENST00000556689 DGKZQ13574 1117 aa16.55■□□□□ 0.24
SHMT2-223ENST00000556689 ZNF428Q96B54 188 aa16.55■□□□□ 0.24
SHMT2-223ENST00000556689 C6orf229H3BNL8 230 aa16.54■□□□□ 0.24
SHMT2-223ENST00000556689 RIMBP2O15034 1052 aa16.54■□□□□ 0.24
SHMT2-223ENST00000556689 SF3B3Q15393 1217 aaKnown RBP16.54■□□□□ 0.24
SHMT2-223ENST00000556689 TBC1D10BQ4KMP7 808 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-223ENST00000556689 ANKRD13DQ6ZTN6 518 aa16.54■□□□□ 0.24
SHMT2-223ENST00000556689 KRT26Q7Z3Y9 468 aa16.54■□□□□ 0.24
SHMT2-223ENST00000556689 C2orf69Q8N8R5 385 aa16.54■□□□□ 0.24
SHMT2-223ENST00000556689 PLBD2Q8NHP8 589 aa16.54■□□□□ 0.24
SHMT2-223ENST00000556689 ZIC5Q96T25 663 aa16.54■□□□□ 0.24
SHMT2-223ENST00000556689 DBNDD1Q9H9R9 158 aa16.54■□□□□ 0.24
SHMT2-223ENST00000556689 CHL1O00533 1208 aa16.53■□□□□ 0.24
SHMT2-223ENST00000556689 RPS12P25398 132 aaKnown RBP16.53■□□□□ 0.24
SHMT2-223ENST00000556689 RBM26Q5T8P6 1007 aaKnown RBP16.53■□□□□ 0.24
SHMT2-223ENST00000556689 RGMBQ6NW40 437 aa16.53■□□□□ 0.24
SHMT2-223ENST00000556689 DLK2Q6UY11 383 aa16.53■□□□□ 0.24
SHMT2-223ENST00000556689 CELF1Q92879 486 aaKnown RBP16.53■□□□□ 0.24
SHMT2-223ENST00000556689 CCDC102AQ96A19 550 aa16.53■□□□□ 0.24
SHMT2-223ENST00000556689 DCPSQ96C86 337 aaKnown RBP16.53■□□□□ 0.24
SHMT2-223ENST00000556689 FAM89AQ96GI7 184 aa16.53■□□□□ 0.24
SHMT2-223ENST00000556689 EYA3Q99504 573 aa16.53■□□□□ 0.24
SHMT2-223ENST00000556689 CHPF2Q9P2E5 772 aa16.53■□□□□ 0.24
SHMT2-223ENST00000556689 POLLQ9UGP5 575 aa16.53■□□□□ 0.24
SHMT2-223ENST00000556689 LAS1LQ9Y4W2 734 aaKnown RBP16.53■□□□□ 0.24
SHMT2-223ENST00000556689 NEUROD2Q15784 382 aa16.52■□□□□ 0.24
SHMT2-223ENST00000556689 KRT24Q2M2I5 525 aa16.52■□□□□ 0.24
SHMT2-223ENST00000556689 ISCA1Q9BUE6 129 aa16.52■□□□□ 0.24
SHMT2-223ENST00000556689 GBA2Q9HCG7 927 aaPredicted RBP16.52■□□□□ 0.24
SHMT2-223ENST00000556689 ATP5J2-PTCD1G3V325 749 aa16.51■□□□□ 0.23
SHMT2-223ENST00000556689 ECE2O60344 883 aa16.51■□□□□ 0.23
SHMT2-223ENST00000556689 EGFRP00533 1210 aa16.51■□□□□ 0.23
SHMT2-223ENST00000556689 GPSM2P81274 684 aa16.51■□□□□ 0.23
SHMT2-223ENST00000556689 DOK7Q18PE1 504 aa16.51■□□□□ 0.23
SHMT2-223ENST00000556689 KCNQ5Q9NR82 932 aa16.51■□□□□ 0.23
SHMT2-223ENST00000556689 FAM155AB1AL88 458 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-223ENST00000556689 ZNF157P51786 506 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-223ENST00000556689 RPS8P62241 208 aaKnown RBP16.5■□□□□ 0.23
SHMT2-223ENST00000556689 HDGFL1Q5TGJ6 251 aa16.5■□□□□ 0.23
SHMT2-223ENST00000556689 ZC3H12CQ9C0D7 883 aaKnown RBP16.5■□□□□ 0.23
SHMT2-223ENST00000556689 DBF4Q9UBU7 674 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-223ENST00000556689 VIL1P09327 827 aaKnown RBP16.49■□□□□ 0.23
SHMT2-223ENST00000556689 KIF23Q02241 960 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-223ENST00000556689 TRIM28Q13263 835 aaKnown RBP16.49■□□□□ 0.23
SHMT2-223ENST00000556689 RALBP1Q15311 655 aa16.49■□□□□ 0.23
SHMT2-223ENST00000556689 RTL5Q5HYW3 569 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-223ENST00000556689 TBC1D16Q8TBP0 767 aa16.49■□□□□ 0.23
SHMT2-223ENST00000556689 SAGE1Q9NXZ1 904 aa16.49■□□□□ 0.23
SHMT2-223ENST00000556689 ANKRD36CQ5JPF3 1778 aa16.49■□□□□ 0.23
SHMT2-223ENST00000556689 ADM5C9JUS6 153 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms