RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 SUPT20HQ8NEM7 779 aa26.3■■□□□ 1.8
CCDC88C-210ENST00000555995 LINS1Q8NG48 757 aa26.3■■□□□ 1.8
CCDC88C-210ENST00000555995 IARSP41252 1262 aaKnown RBP26.29■■□□□ 1.8
CCDC88C-210ENST00000555995 CCDC152Q4G0S7 254 aa26.29■■□□□ 1.8
CCDC88C-210ENST00000555995 OLFM4Q6UX06 510 aa26.29■■□□□ 1.8
CCDC88C-210ENST00000555995 SP8Q8IXZ3 490 aa26.29■■□□□ 1.8
CCDC88C-210ENST00000555995 WDR90Q96KV7 1748 aa26.28■■□□□ 1.8
CCDC88C-210ENST00000555995 KIF3CO14782 793 aa26.28■■□□□ 1.8
CCDC88C-210ENST00000555995 C16orf71Q8IYS4 520 aaPredicted RBP26.28■■□□□ 1.8
CCDC88C-210ENST00000555995 VPS33BQ9H267 617 aa26.28■■□□□ 1.8
CCDC88C-210ENST00000555995 ZNF277Q9NRM2 450 aaPredicted RBP26.28■■□□□ 1.8
CCDC88C-210ENST00000555995 CT47B1P0C2W7 299 aaPredicted RBP26.27■■□□□ 1.8
CCDC88C-210ENST00000555995 JDP2Q8WYK2 163 aa26.27■■□□□ 1.8
CCDC88C-210ENST00000555995 NMRK2Q9NPI5 230 aa26.27■■□□□ 1.8
CCDC88C-210ENST00000555995 TAF1P21675 1872 aa26.26■■□□□ 1.79
CCDC88C-210ENST00000555995 CWF19L2Q2TBE0 894 aaKnown RBP26.26■■□□□ 1.79
CCDC88C-210ENST00000555995 TOMM70O94826 608 aa26.24■■□□□ 1.79
CCDC88C-210ENST00000555995 GCKRQ14397 625 aa26.24■■□□□ 1.79
CCDC88C-210ENST00000555995 DPP8Q6V1X1 898 aaPredicted RBP26.24■■□□□ 1.79
CCDC88C-210ENST00000555995 VEGFAP15692 232 aaPredicted RBP26.23■■□□□ 1.79
CCDC88C-210ENST00000555995 ALDH1L2Q3SY69 923 aa26.23■■□□□ 1.79
CCDC88C-210ENST00000555995 TRMT2AQ8IZ69 625 aaKnown RBP26.23■■□□□ 1.79
CCDC88C-210ENST00000555995 MPNDQ8N594 471 aa26.23■■□□□ 1.79
CCDC88C-210ENST00000555995 PTPRCP08575 1304 aa26.22■■□□□ 1.79
CCDC88C-210ENST00000555995 CTSWP56202 376 aa26.22■■□□□ 1.79
CCDC88C-210ENST00000555995 UBE3BQ7Z3V4 1068 aa26.22■■□□□ 1.79
CCDC88C-210ENST00000555995 RTFDC1Q9BY42 306 aaPredicted RBP26.22■■□□□ 1.79
CCDC88C-210ENST00000555995 RTL9Q8NET4 1388 aa26.21■■□□□ 1.79
CCDC88C-210ENST00000555995 H7C1W4 665 aa26.21■■□□□ 1.79
CCDC88C-210ENST00000555995 RPS8P62241 208 aaKnown RBP26.21■■□□□ 1.79
CCDC88C-210ENST00000555995 LARGE2Q8N3Y3 721 aa26.21■■□□□ 1.79
CCDC88C-210ENST00000555995 CELF1Q92879 486 aaKnown RBP26.21■■□□□ 1.79
CCDC88C-210ENST00000555995 CDCA7LQ96GN5 454 aa26.21■■□□□ 1.79
CCDC88C-210ENST00000555995 RRAGCQ9HB90 399 aa26.21■■□□□ 1.79
CCDC88C-210ENST00000555995 SCN4AP35499 1836 aa26.21■■□□□ 1.79
CCDC88C-210ENST00000555995 CDC5LQ99459 802 aaKnown RBP26.2■■□□□ 1.78
CCDC88C-210ENST00000555995 FZD9O00144 591 aa26.19■■□□□ 1.78
CCDC88C-210ENST00000555995 PPIP5K2O43314 1243 aa26.19■■□□□ 1.78
CCDC88C-210ENST00000555995 ALDH1L1O75891 902 aa26.19■■□□□ 1.78
CCDC88C-210ENST00000555995 BEND3Q5T5X7 828 aa26.19■■□□□ 1.78
CCDC88C-210ENST00000555995 NIM1KQ8IY84 436 aa26.19■■□□□ 1.78
CCDC88C-210ENST00000555995 RBM46Q8TBY0 533 aaKnown RBP26.19■■□□□ 1.78
CCDC88C-210ENST00000555995 PLA2G12BQ9BX93 195 aa26.19■■□□□ 1.78
CCDC88C-210ENST00000555995 IQCA1LA6NCM1 817 aa26.18■■□□□ 1.78
CCDC88C-210ENST00000555995 F6X3S4 739 aa26.18■■□□□ 1.78
CCDC88C-210ENST00000555995 EIF6P56537 245 aaKnown RBP26.18■■□□□ 1.78
CCDC88C-210ENST00000555995 MRPL50Q8N5N7 158 aaKnown RBP26.18■■□□□ 1.78
CCDC88C-210ENST00000555995 ANKRD18AQ8IVF6 992 aa26.17■■□□□ 1.78
CCDC88C-210ENST00000555995 JARID2Q92833 1246 aaPredicted RBP26.17■■□□□ 1.78
CCDC88C-210ENST00000555995 L3MBTL3Q96JM7 780 aaPredicted RBP26.17■■□□□ 1.78
CCDC88C-210ENST00000555995 SRCIN1Q9C0H9 1055 aa26.17■■□□□ 1.78
CCDC88C-210ENST00000555995 DUOX1Q9NRD9 1551 aa26.16■■□□□ 1.78
CCDC88C-210ENST00000555995 TTLL11Q8NHH1 800 aa26.16■■□□□ 1.78
CCDC88C-210ENST00000555995 SSH1Q8WYL5 1049 aa26.16■■□□□ 1.78
CCDC88C-210ENST00000555995 LTBP1Q14766 1721 aa26.16■■□□□ 1.78
CCDC88C-210ENST00000555995 KIAA2012Q0VF49 1180 aa26.15■■□□□ 1.78
CCDC88C-210ENST00000555995 SLC4A10Q6U841 1118 aa26.15■■□□□ 1.78
CCDC88C-210ENST00000555995 GPC2Q8N158 579 aa26.15■■□□□ 1.78
CCDC88C-210ENST00000555995 EYA3Q99504 573 aa26.15■■□□□ 1.78
CCDC88C-210ENST00000555995 SEC31BQ9NQW1 1179 aa26.15■■□□□ 1.78
CCDC88C-210ENST00000555995 SMC4Q9NTJ3 1288 aa26.15■■□□□ 1.78
CCDC88C-210ENST00000555995 ZNF541Q9H0D2 1346 aa26.14■■□□□ 1.78
CCDC88C-210ENST00000555995 DDNO94850 711 aaPredicted RBP26.14■■□□□ 1.78
CCDC88C-210ENST00000555995 HNRNPUQ00839 825 aaKnown RBP eCLIP26.14■■□□□ 1.78
CCDC88C-210ENST00000555995 FSTL1Q12841 308 aa26.14■■□□□ 1.78
CCDC88C-210ENST00000555995 AOC3Q16853 763 aa26.14■■□□□ 1.78
CCDC88C-210ENST00000555995 NSFL1CQ9UNZ2 370 aaKnown RBP26.14■■□□□ 1.78
CCDC88C-210ENST00000555995 SPEF2Q9C093 1822 aa26.14■■□□□ 1.77
CCDC88C-210ENST00000555995 GRM8O00222 908 aa26.13■■□□□ 1.77
CCDC88C-210ENST00000555995 CASP7P55210 303 aa26.13■■□□□ 1.77
CCDC88C-210ENST00000555995 C9orf78Q9NZ63 289 aaPredicted RBP26.13■■□□□ 1.77
CCDC88C-210ENST00000555995 COL4A5P29400 1685 aa26.12■■□□□ 1.77
CCDC88C-210ENST00000555995 SMC1BQ8NDV3 1235 aa26.12■■□□□ 1.77
CCDC88C-210ENST00000555995 CCDC85AQ96PX6 553 aaPredicted RBP26.12■■□□□ 1.77
CCDC88C-210ENST00000555995 PODXL2Q9NZ53 605 aa26.12■■□□□ 1.77
CCDC88C-210ENST00000555995 COL4A1P02462 1669 aa26.12■■□□□ 1.77
CCDC88C-210ENST00000555995 IGHMBP2P38935 993 aaKnown RBP26.11■■□□□ 1.77
CCDC88C-210ENST00000555995 SLC51AQ86UW1 340 aa26.11■■□□□ 1.77
CCDC88C-210ENST00000555995 GREM2Q9H772 168 aa26.11■■□□□ 1.77
CCDC88C-210ENST00000555995 ZNRF3Q9ULT6 936 aa26.11■■□□□ 1.77
CCDC88C-210ENST00000555995 WASHC4Q2M389 1173 aa26.1■■□□□ 1.77
CCDC88C-210ENST00000555995 ANKIB1Q9P2G1 1089 aa26.1■■□□□ 1.77
CCDC88C-210ENST00000555995 XDHP47989 1333 aa26.1■■□□□ 1.77
CCDC88C-210ENST00000555995 C6orf229H3BNL8 230 aa26.09■■□□□ 1.77
CCDC88C-210ENST00000555995 CSF1RP07333 972 aa26.09■■□□□ 1.77
CCDC88C-210ENST00000555995 HSPA6P17066 643 aa26.09■■□□□ 1.77
CCDC88C-210ENST00000555995 BRPF1P55201 1214 aaPredicted RBP26.09■■□□□ 1.77
CCDC88C-210ENST00000555995 GPSM2P81274 684 aa26.09■■□□□ 1.77
CCDC88C-210ENST00000555995 BCL2L13Q9BXK5 485 aa26.09■■□□□ 1.77
CCDC88C-210ENST00000555995 BSDC1Q9NW68 430 aaPredicted RBP26.09■■□□□ 1.77
CCDC88C-210ENST00000555995 KIF16BQ96L93 1317 aa26.09■■□□□ 1.77
CCDC88C-210ENST00000555995 POTECB2RU33 542 aa26.08■■□□□ 1.77
CCDC88C-210ENST00000555995 HACL1Q9UJ83 578 aa26.08■■□□□ 1.77
CCDC88C-210ENST00000555995 GGA1Q9UJY5 639 aa26.08■■□□□ 1.77
CCDC88C-210ENST00000555995 ITGA6P23229 1130 aa26.07■■□□□ 1.76
CCDC88C-210ENST00000555995 LMOD1P29536 600 aaPredicted RBP26.07■■□□□ 1.76
CCDC88C-210ENST00000555995 ANKRD18BA2A2Z9 1011 aa26.06■■□□□ 1.76
CCDC88C-210ENST00000555995 UFL1O94874 794 aa26.06■■□□□ 1.76
CCDC88C-210ENST00000555995 FAM161AQ3B820 660 aa26.06■■□□□ 1.76
CCDC88C-210ENST00000555995 TBC1D16Q8TBP0 767 aa26.06■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms