RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 ERFEQ4G0M1 354 aa13.89□□□□□ -0.19
SHMT2-220ENST00000555634 B4GALNT3Q6L9W6 998 aa13.89□□□□□ -0.19
SHMT2-220ENST00000555634 LMBR1LQ6UX01 489 aa13.89□□□□□ -0.19
SHMT2-220ENST00000555634 ERC1Q8IUD2 1116 aa13.89□□□□□ -0.19
SHMT2-220ENST00000555634 RPGRQ92834 1020 aaKnown RBP13.89□□□□□ -0.19
SHMT2-220ENST00000555634 CDC5LQ99459 802 aaKnown RBP13.89□□□□□ -0.19
SHMT2-220ENST00000555634 RTL9Q8NET4 1388 aa13.88□□□□□ -0.19
SHMT2-220ENST00000555634 HCLS1P14317 486 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-220ENST00000555634 TM4SF1P30408 202 aa13.88□□□□□ -0.19
SHMT2-220ENST00000555634 JARID2Q92833 1246 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-220ENST00000555634 PDZRN3Q9UPQ7 1066 aa13.88□□□□□ -0.19
SHMT2-220ENST00000555634 PCDHB15Q9Y5E8 787 aa13.88□□□□□ -0.19
SHMT2-220ENST00000555634 PDE6BP35913 854 aa13.87□□□□□ -0.19
SHMT2-220ENST00000555634 PRR5LQ6MZQ0 368 aa13.87□□□□□ -0.19
SHMT2-220ENST00000555634 PELP1Q8IZL8 1130 aaKnown RBP13.87□□□□□ -0.19
SHMT2-220ENST00000555634 SSH3Q8TE77 659 aa13.87□□□□□ -0.19
SHMT2-220ENST00000555634 ARAP2Q8WZ64 1704 aa13.87□□□□□ -0.19
SHMT2-220ENST00000555634 IGHMBP2P38935 993 aaKnown RBP13.86□□□□□ -0.19
SHMT2-220ENST00000555634 FOXO4P98177 505 aa13.86□□□□□ -0.19
SHMT2-220ENST00000555634 DDR1Q08345 913 aa13.86□□□□□ -0.19
SHMT2-220ENST00000555634 G3BP1Q13283 466 aaKnown RBP eCLIP13.86□□□□□ -0.198e-8■■■□□ 16.6
SHMT2-220ENST00000555634 FAM161AQ3B820 660 aa13.86□□□□□ -0.19
SHMT2-220ENST00000555634 DDX46Q7L014 1031 aaKnown RBP13.86□□□□□ -0.19
SHMT2-220ENST00000555634 FBXO3Q9UK99 471 aa13.86□□□□□ -0.19
SHMT2-220ENST00000555634 AK9Q5TCS8 1911 aa13.86□□□□□ -0.19
SHMT2-220ENST00000555634 MYH13Q9UKX3 1938 aa13.86□□□□□ -0.19
SHMT2-220ENST00000555634 TAF1P21675 1872 aa13.85□□□□□ -0.19
SHMT2-220ENST00000555634 C10orf71Q711Q0 1435 aa13.85□□□□□ -0.19
SHMT2-220ENST00000555634 PNMA6EA0A0J9YXQ4 647 aa13.85□□□□□ -0.19
SHMT2-220ENST00000555634 PSDA5PKW4 1024 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-220ENST00000555634 RAB11FIP3O75154 756 aa13.85□□□□□ -0.19
SHMT2-220ENST00000555634 SURF6O75683 361 aaKnown RBP13.85□□□□□ -0.19
SHMT2-220ENST00000555634 ZBTB7AO95365 584 aa13.85□□□□□ -0.19
SHMT2-220ENST00000555634 ITGA6P23229 1130 aa13.85□□□□□ -0.19
SHMT2-220ENST00000555634 SLC10A5Q5PT55 438 aa13.85□□□□□ -0.19
SHMT2-220ENST00000555634 MPHOSPH8Q99549 860 aa13.85□□□□□ -0.19
SHMT2-220ENST00000555634 BRIP1Q9BX63 1249 aa13.85□□□□□ -0.19
SHMT2-220ENST00000555634 TMX4Q9H1E5 349 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-220ENST00000555634 LRRC37AA6NMS7 1700 aa13.84□□□□□ -0.19
SHMT2-220ENST00000555634 POLA2Q14181 598 aa13.84□□□□□ -0.19
SHMT2-220ENST00000555634 ANKRD18AQ8IVF6 992 aa13.84□□□□□ -0.19
SHMT2-220ENST00000555634 TTLL11Q8NHH1 800 aa13.84□□□□□ -0.19
SHMT2-220ENST00000555634 RBM17Q96I25 401 aaKnown RBP13.84□□□□□ -0.19
SHMT2-220ENST00000555634 CCDC85AQ96PX6 553 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-220ENST00000555634 CSF1RP07333 972 aa13.83□□□□□ -0.2
SHMT2-220ENST00000555634 SF3B3Q15393 1217 aaKnown RBP13.83□□□□□ -0.2
SHMT2-220ENST00000555634 EPHA10Q5JZY3 1008 aa13.83□□□□□ -0.2
SHMT2-220ENST00000555634 KIF1BPQ96EK5 621 aa13.83□□□□□ -0.2
SHMT2-220ENST00000555634 KAZALD1Q96I82 304 aa13.83□□□□□ -0.2
SHMT2-220ENST00000555634 LRRCC1Q9C099 1032 aa13.83□□□□□ -0.2
SHMT2-220ENST00000555634 GREM2Q9H772 168 aa13.83□□□□□ -0.2
SHMT2-220ENST00000555634 CNNM1Q9NRU3 951 aa13.83□□□□□ -0.2
SHMT2-220ENST00000555634 KDM2BQ8NHM5 1336 aa13.83□□□□□ -0.2
SHMT2-220ENST00000555634 APBB1O00213 710 aa13.82□□□□□ -0.2
SHMT2-220ENST00000555634 CIAO1O76071 339 aa13.82□□□□□ -0.2
SHMT2-220ENST00000555634 IL15P40933 162 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-220ENST00000555634 TMC4Q7Z404 712 aa13.82□□□□□ -0.2
SHMT2-220ENST00000555634 SMC5Q8IY18 1101 aa13.82□□□□□ -0.2
SHMT2-220ENST00000555634 SYNE4Q8N205 404 aa13.82□□□□□ -0.2
SHMT2-220ENST00000555634 GPATCH3Q96I76 525 aa13.82□□□□□ -0.2
SHMT2-220ENST00000555634 SIL1Q9H173 461 aa13.82□□□□□ -0.2
SHMT2-220ENST00000555634 DCTPP1Q9H773 170 aa13.82□□□□□ -0.2
SHMT2-220ENST00000555634 COPRSQ9NQ92 184 aa13.82□□□□□ -0.2
SHMT2-220ENST00000555634 EXOC6BQ9Y2D4 811 aa13.82□□□□□ -0.2
SHMT2-220ENST00000555634 BRCA1P38398 1863 aaKnown RBP13.81□□□□□ -0.2
SHMT2-220ENST00000555634 H0YIN7 160 aa13.81□□□□□ -0.2
SHMT2-220ENST00000555634 NPR1P16066 1061 aa13.81□□□□□ -0.2
SHMT2-220ENST00000555634 LDHAL6AQ6ZMR3 332 aa13.81□□□□□ -0.2
SHMT2-220ENST00000555634 SIRT2Q8IXJ6 389 aa13.81□□□□□ -0.2
SHMT2-220ENST00000555634 SPON1Q9HCB6 807 aa13.81□□□□□ -0.2
SHMT2-220ENST00000555634 MROH5Q6ZUA9 1318 aa13.81□□□□□ -0.2
SHMT2-220ENST00000555634 IGHDP01880 384 aa13.8□□□□□ -0.2
SHMT2-220ENST00000555634 ALDH1B1P30837 517 aa13.8□□□□□ -0.2
SHMT2-220ENST00000555634 ANKRD45Q5TZF3 282 aa13.8□□□□□ -0.2
SHMT2-220ENST00000555634 CLASRPQ8N2M8 674 aaKnown RBP13.8□□□□□ -0.2
SHMT2-220ENST00000555634 CCDC24Q8N4L8 307 aa13.8□□□□□ -0.2
SHMT2-220ENST00000555634 ATF5Q9Y2D1 282 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-220ENST00000555634 NOP58Q9Y2X3 529 aaKnown RBP13.8□□□□□ -0.2
SHMT2-220ENST00000555634 KIAA1551Q9HCM1 1747 aa13.79□□□□□ -0.2
SHMT2-220ENST00000555634 EYA2O00167 538 aa13.79□□□□□ -0.2
SHMT2-220ENST00000555634 PTPN12Q05209 780 aaKnown RBP13.79□□□□□ -0.2
SHMT2-220ENST00000555634 GRAPQ13588 217 aa13.79□□□□□ -0.2
SHMT2-220ENST00000555634 CRY2Q49AN0 593 aa13.79□□□□□ -0.2
SHMT2-220ENST00000555634 METTL24Q5JXM2 366 aa13.79□□□□□ -0.2
SHMT2-220ENST00000555634 C2CD5Q86YS7 1000 aa13.79□□□□□ -0.2
SHMT2-220ENST00000555634 KLHL34Q8N239 644 aa13.79□□□□□ -0.2
SHMT2-220ENST00000555634 GRAPLQ8TC17 118 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-220ENST00000555634 MASTLQ96GX5 879 aa13.79□□□□□ -0.2
SHMT2-220ENST00000555634 PDGFDQ9GZP0 370 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-220ENST00000555634 PPP1R1BQ9UD71 204 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-220ENST00000555634 AKAP2Q9Y2D5 859 aa13.79□□□□□ -0.2
SHMT2-220ENST00000555634 KCNJ4P48050 445 aa13.78□□□□□ -0.2
SHMT2-220ENST00000555634 STYK1Q6J9G0 422 aa13.78□□□□□ -0.2
SHMT2-220ENST00000555634 CHD1LQ86WJ1 897 aa13.78□□□□□ -0.2
SHMT2-220ENST00000555634 CRAMP1Q96RY5 1269 aa13.78□□□□□ -0.2
SHMT2-220ENST00000555634 BCL11AQ9H165 835 aa13.78□□□□□ -0.2
SHMT2-220ENST00000555634 CEP126Q9P2H0 1117 aa13.78□□□□□ -0.2
SHMT2-220ENST00000555634 PA2G4Q9UQ80 394 aaKnown RBP13.78□□□□□ -0.2
SHMT2-220ENST00000555634 ARFGEF1Q9Y6D6 1849 aa13.78□□□□□ -0.2
SHMT2-220ENST00000555634 ZNF609O15014 1411 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 144.1 ms