RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 SOGA3Q5TF21 947 aa18.03■□□□□ 0.48
SHMT2-217ENST00000555116 DDX46Q7L014 1031 aaKnown RBP18.03■□□□□ 0.48
SHMT2-217ENST00000555116 SRCIN1Q9C0H9 1055 aa18.03■□□□□ 0.48
SHMT2-217ENST00000555116 PRELPP51888 382 aa18.02■□□□□ 0.48
SHMT2-217ENST00000555116 SLC51AQ86UW1 340 aa18.02■□□□□ 0.48
SHMT2-217ENST00000555116 PPEF1O14829 653 aaPredicted RBP18.01■□□□□ 0.47
SHMT2-217ENST00000555116 BCAR3O75815 825 aa18.01■□□□□ 0.47
SHMT2-217ENST00000555116 GRAPQ13588 217 aa18.01■□□□□ 0.47
SHMT2-217ENST00000555116 CCDC93Q567U6 631 aa18.01■□□□□ 0.47
SHMT2-217ENST00000555116 GRAPLQ8TC17 118 aaPredicted RBP18.01■□□□□ 0.47
SHMT2-217ENST00000555116 PLA2G12BQ9BX93 195 aa18.01■□□□□ 0.47
SHMT2-217ENST00000555116 LRRC37AA6NMS7 1700 aa18.01■□□□□ 0.47
SHMT2-217ENST00000555116 LTBP3Q9NS15 1303 aa18.01■□□□□ 0.47
SHMT2-217ENST00000555116 CTSWP56202 376 aa18.01■□□□□ 0.47
SHMT2-217ENST00000555116 KIF16BQ96L93 1317 aa18■□□□□ 0.47
SHMT2-217ENST00000555116 GRM8O00222 908 aa18■□□□□ 0.47
SHMT2-217ENST00000555116 BBOX1O75936 387 aa18■□□□□ 0.47
SHMT2-217ENST00000555116 CCDC152Q4G0S7 254 aa17.99■□□□□ 0.47
SHMT2-217ENST00000555116 C9orf131Q5VYM1 1079 aa17.99■□□□□ 0.47
SHMT2-217ENST00000555116 CC2D2BQ6DHV5 1058 aa17.99■□□□□ 0.47
SHMT2-217ENST00000555116 TTLL11Q8NHH1 800 aa17.99■□□□□ 0.47
SHMT2-217ENST00000555116 ARHGAP45Q92619 1136 aa17.99■□□□□ 0.47
SHMT2-217ENST00000555116 CELF1Q92879 486 aaKnown RBP17.99■□□□□ 0.47
SHMT2-217ENST00000555116 API5Q9BZZ5 524 aaKnown RBP17.99■□□□□ 0.47
SHMT2-217ENST00000555116 SEC31BQ9NQW1 1179 aa17.99■□□□□ 0.47
SHMT2-217ENST00000555116 ATP6V0A2Q9Y487 856 aa17.99■□□□□ 0.47
SHMT2-217ENST00000555116 SPEF2Q9C093 1822 aa17.99■□□□□ 0.47
SHMT2-217ENST00000555116 RTKN2Q8IZC4 609 aa17.98■□□□□ 0.47
SHMT2-217ENST00000555116 CCDC85AQ96PX6 553 aaPredicted RBP17.98■□□□□ 0.47
SHMT2-217ENST00000555116 TAOK3Q9H2K8 898 aa17.98■□□□□ 0.47
SHMT2-217ENST00000555116 C9orf78Q9NZ63 289 aaPredicted RBP17.98■□□□□ 0.47
SHMT2-217ENST00000555116 RTL9Q8NET4 1388 aa17.98■□□□□ 0.47
SHMT2-217ENST00000555116 UTYO14607 1347 aa17.97■□□□□ 0.47
SHMT2-217ENST00000555116 TIAM2Q8IVF5 1701 aa17.97■□□□□ 0.47
SHMT2-217ENST00000555116 LMNB1P20700 586 aa17.97■□□□□ 0.47
SHMT2-217ENST00000555116 SP8Q8IXZ3 490 aa17.97■□□□□ 0.47
SHMT2-217ENST00000555116 RNF181Q9P0P0 153 aa17.97■□□□□ 0.47
SHMT2-217ENST00000555116 CSF1RP07333 972 aa17.97■□□□□ 0.47
SHMT2-217ENST00000555116 FOXO4P98177 505 aa17.97■□□□□ 0.47
SHMT2-217ENST00000555116 FKBP4Q02790 459 aaKnown RBP eCLIP17.97■□□□□ 0.47
SHMT2-217ENST00000555116 TMC4Q7Z404 712 aa17.97■□□□□ 0.47
SHMT2-217ENST00000555116 RPS8P62241 208 aaKnown RBP17.96■□□□□ 0.47
SHMT2-217ENST00000555116 GRIPAP1Q4V328 841 aa17.96■□□□□ 0.47
SHMT2-217ENST00000555116 GREM2Q9H772 168 aa17.96■□□□□ 0.47
SHMT2-217ENST00000555116 IPO8O15397 1037 aaKnown RBP17.95■□□□□ 0.46
SHMT2-217ENST00000555116 NBPF7P0C2Y1 421 aaPredicted RBP17.95■□□□□ 0.46
SHMT2-217ENST00000555116 CCT4P50991 539 aaKnown RBP17.95■□□□□ 0.46
SHMT2-217ENST00000555116 EPHA10Q5JZY3 1008 aa17.95■□□□□ 0.46
SHMT2-217ENST00000555116 TRIM27P14373 513 aa17.95■□□□□ 0.46
SHMT2-217ENST00000555116 ATF7IPQ6VMQ6 1270 aa17.95■□□□□ 0.46
SHMT2-217ENST00000555116 FRAT1Q92837 279 aaPredicted RBP17.95■□□□□ 0.46
SHMT2-217ENST00000555116 PSMD1Q99460 953 aa17.95■□□□□ 0.46
SHMT2-217ENST00000555116 USP44Q9H0E7 712 aa17.95■□□□□ 0.46
SHMT2-217ENST00000555116 TNNQ9UQP3 1299 aa17.95■□□□□ 0.46
SHMT2-217ENST00000555116 LTBP1Q14766 1721 aa17.94■□□□□ 0.46
SHMT2-217ENST00000555116 KAZALD1Q96I82 304 aa17.94■□□□□ 0.46
SHMT2-217ENST00000555116 SUCLG2Q96I99 432 aa17.94■□□□□ 0.46
SHMT2-217ENST00000555116 FAM161AQ3B820 660 aa17.93■□□□□ 0.46
SHMT2-217ENST00000555116 ZNF784Q8NCA9 323 aaPredicted RBP17.93■□□□□ 0.46
SHMT2-217ENST00000555116 ZNF277Q9NRM2 450 aaPredicted RBP17.93■□□□□ 0.46
SHMT2-217ENST00000555116 DUOX1Q9NRD9 1551 aa17.93■□□□□ 0.46
SHMT2-217ENST00000555116 INTS3Q68E01 1043 aaKnown RBP17.92■□□□□ 0.46
SHMT2-217ENST00000555116 TMX4Q9H1E5 349 aaPredicted RBP17.92■□□□□ 0.46
SHMT2-217ENST00000555116 ZKSCAN2Q63HK3 967 aa17.92■□□□□ 0.46
SHMT2-217ENST00000555116 ANKRD18AQ8IVF6 992 aa17.92■□□□□ 0.46
SHMT2-217ENST00000555116 CDC5LQ99459 802 aaKnown RBP17.92■□□□□ 0.46
SHMT2-217ENST00000555116 RTFDC1Q9BY42 306 aaPredicted RBP17.92■□□□□ 0.46
SHMT2-217ENST00000555116 ITGA6P23229 1130 aa17.91■□□□□ 0.46
SHMT2-217ENST00000555116 LMBR1LQ6UX01 489 aa17.91■□□□□ 0.46
SHMT2-217ENST00000555116 MPNDQ8N594 471 aa17.91■□□□□ 0.46
SHMT2-217ENST00000555116 ZC3H4Q9UPT8 1303 aaKnown RBP17.91■□□□□ 0.46
SHMT2-217ENST00000555116 COL4A5P29400 1685 aa17.9■□□□□ 0.46
SHMT2-217ENST00000555116 IARSP41252 1262 aaKnown RBP17.9■□□□□ 0.46
SHMT2-217ENST00000555116 GPSM2P81274 684 aa17.9■□□□□ 0.46
SHMT2-217ENST00000555116 DPP8Q6V1X1 898 aaPredicted RBP17.9■□□□□ 0.46
SHMT2-217ENST00000555116 ANKRD44Q8N8A2 993 aa17.89■□□□□ 0.45
SHMT2-217ENST00000555116 CLUAP1Q96AJ1 413 aa17.89■□□□□ 0.45
SHMT2-217ENST00000555116 BSDC1Q9NW68 430 aaPredicted RBP17.89■□□□□ 0.45
SHMT2-217ENST00000555116 A0A1B0GUL6 1792 aa17.89■□□□□ 0.45
SHMT2-217ENST00000555116 RABL6Q3YEC7 729 aaPredicted RBP17.88■□□□□ 0.45
SHMT2-217ENST00000555116 BICC1Q9H694 974 aaKnown RBP17.88■□□□□ 0.45
SHMT2-217ENST00000555116 RCAN3Q9UKA8 241 aa17.88■□□□□ 0.45
SHMT2-217ENST00000555116 ANKRD18BA2A2Z9 1011 aa17.88■□□□□ 0.45
SHMT2-217ENST00000555116 SUPT20HQ8NEM7 779 aa17.88■□□□□ 0.45
SHMT2-217ENST00000555116 NSFL1CQ9UNZ2 370 aaKnown RBP17.88■□□□□ 0.45
SHMT2-217ENST00000555116 CHMP3Q9Y3E7 222 aa17.88■□□□□ 0.45
SHMT2-217ENST00000555116 IFIT5Q13325 482 aaKnown RBP17.87■□□□□ 0.45
SHMT2-217ENST00000555116 MEIS3Q99687 375 aa17.87■□□□□ 0.45
SHMT2-217ENST00000555116 PODXL2Q9NZ53 605 aa17.87■□□□□ 0.45
SHMT2-217ENST00000555116 UBTFL1P0CB47 393 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-217ENST00000555116 IGHMBP2P38935 993 aaKnown RBP17.86■□□□□ 0.45
SHMT2-217ENST00000555116 TMEM57Q8N5G2 664 aa17.86■□□□□ 0.45
SHMT2-217ENST00000555116 VPS33BQ9H267 617 aa17.86■□□□□ 0.45
SHMT2-217ENST00000555116 POLLQ9UGP5 575 aa17.86■□□□□ 0.45
SHMT2-217ENST00000555116 MINPP1Q9UNW1 487 aa17.86■□□□□ 0.45
SHMT2-217ENST00000555116 ZNF526Q8TF50 670 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-217ENST00000555116 PPIP5K2O43314 1243 aa17.85■□□□□ 0.45
SHMT2-217ENST00000555116 RLBP1P12271 317 aa17.85■□□□□ 0.45
SHMT2-217ENST00000555116 AOC3Q16853 763 aa17.85■□□□□ 0.45
SHMT2-217ENST00000555116 CCDC57Q2TAC2 916 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms