RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 PTF1AQ7RTS3 328 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 TNPO1Q92973 898 aaKnown RBP14.11□□□□□ -0.15
SHMT2-212ENST00000554467 SSFA2P28290 1259 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 EVI5LQ96CN4 794 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 MAP3K15Q6ZN16 1313 aa14.1□□□□□ -0.15
SHMT2-212ENST00000554467 A0A0D9SFI3 127 aa14.1□□□□□ -0.15
SHMT2-212ENST00000554467 FOXD4L5Q5VV16 416 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-212ENST00000554467 FOXD4L4Q8WXT5 416 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-212ENST00000554467 DDX46Q7L014 1031 aaKnown RBP14.1□□□□□ -0.15
SHMT2-212ENST00000554467 TJP1Q07157 1748 aa14.1□□□□□ -0.15
SHMT2-212ENST00000554467 DZIP3Q86Y13 1208 aaKnown RBP14.09□□□□□ -0.15
SHMT2-212ENST00000554467 DOT1LQ8TEK3 1739 aa14.09□□□□□ -0.15
SHMT2-212ENST00000554467 GIGYF2Q6Y7W6 1299 aaKnown RBP14.09□□□□□ -0.15
SHMT2-212ENST00000554467 GAS2L3Q86XJ1 694 aa14.09□□□□□ -0.15
SHMT2-212ENST00000554467 RAD50Q92878 1312 aa14.09□□□□□ -0.15
SHMT2-212ENST00000554467 HSPA4P34932 840 aa14.09□□□□□ -0.15
SHMT2-212ENST00000554467 ITPK1Q13572 414 aa14.09□□□□□ -0.15
SHMT2-212ENST00000554467 PRPF40BQ6NWY9 871 aaKnown RBP14.09□□□□□ -0.15
SHMT2-212ENST00000554467 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.09□□□□□ -0.15
SHMT2-212ENST00000554467 CCDC57Q2TAC2 916 aa14.08□□□□□ -0.16
SHMT2-212ENST00000554467 NLRP10Q86W26 655 aa14.08□□□□□ -0.16
SHMT2-212ENST00000554467 SNX14Q9Y5W7 946 aa14.08□□□□□ -0.16
SHMT2-212ENST00000554467 TPM2P07951 284 aa14.08□□□□□ -0.16
SHMT2-212ENST00000554467 COL9A3Q14050 684 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-212ENST00000554467 CHAMP1Q96JM3 812 aa14.08□□□□□ -0.16
SHMT2-212ENST00000554467 TRMT112Q9UI30 125 aaKnown RBP14.08□□□□□ -0.16
SHMT2-212ENST00000554467 TAF7LQ5H9L4 462 aa14.08□□□□□ -0.16
SHMT2-212ENST00000554467 ZNF589Q86UQ0 364 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-212ENST00000554467 TMX3Q96JJ7 454 aa14.08□□□□□ -0.16
SHMT2-212ENST00000554467 SEC62Q99442 399 aaKnown RBP14.08□□□□□ -0.16
SHMT2-212ENST00000554467 LOC102724428A0A0B4J2F2 783 aa14.07□□□□□ -0.16
SHMT2-212ENST00000554467 CRKLP46109 303 aaKnown RBP14.07□□□□□ -0.16
SHMT2-212ENST00000554467 KCNJ4P48050 445 aa14.07□□□□□ -0.16
SHMT2-212ENST00000554467 SIK1P57059 783 aa14.07□□□□□ -0.16
SHMT2-212ENST00000554467 CCDC129Q6ZRS4 1044 aa14.07□□□□□ -0.16
SHMT2-212ENST00000554467 EYA2O00167 538 aa14.07□□□□□ -0.16
SHMT2-212ENST00000554467 GREM2Q9H772 168 aa14.07□□□□□ -0.16
SHMT2-212ENST00000554467 ZBTB38Q8NAP3 1195 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-212ENST00000554467 ADCK5Q3MIX3 580 aa14.06□□□□□ -0.16
SHMT2-212ENST00000554467 INTS5Q6P9B9 1019 aaKnown RBP14.06□□□□□ -0.16
SHMT2-212ENST00000554467 SNRKQ9NRH2 765 aa14.06□□□□□ -0.16
SHMT2-212ENST00000554467 THRAP3Q9Y2W1 955 aaKnown RBP14.06□□□□□ -0.16
SHMT2-212ENST00000554467 TAF6LQ9Y6J9 622 aa14.06□□□□□ -0.16
SHMT2-212ENST00000554467 NRAPQ86VF7 1730 aa14.06□□□□□ -0.16
SHMT2-212ENST00000554467 UBN2Q6ZU65 1347 aa14.06□□□□□ -0.16
SHMT2-212ENST00000554467 GOLIM4O00461 696 aa14.06□□□□□ -0.16
SHMT2-212ENST00000554467 PCCAP05165 728 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-212ENST00000554467 ADORA1P30542 326 aa14.06□□□□□ -0.16
SHMT2-212ENST00000554467 RAB3GAP1Q15042 981 aa14.06□□□□□ -0.16
SHMT2-212ENST00000554467 RUFY2Q8WXA3 655 aa14.06□□□□□ -0.16
SHMT2-212ENST00000554467 CDCA7Q9BWT1 371 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-212ENST00000554467 A0A1B0GUL7 405 aa14.05□□□□□ -0.16
SHMT2-212ENST00000554467 HCLS1P14317 486 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-212ENST00000554467 ATP5JP18859 108 aa14.05□□□□□ -0.16
SHMT2-212ENST00000554467 COL15A1P39059 1388 aa14.05□□□□□ -0.16
SHMT2-212ENST00000554467 IRS4O14654 1257 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-212ENST00000554467 CASTP20810 708 aaKnown RBP14.05□□□□□ -0.16
SHMT2-212ENST00000554467 IL15P40933 162 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-212ENST00000554467 ANAPC15P60006 121 aa14.04□□□□□ -0.16
SHMT2-212ENST00000554467 IFIT5Q13325 482 aaKnown RBP14.04□□□□□ -0.16
SHMT2-212ENST00000554467 TCEANC2Q96MN5 208 aa14.04□□□□□ -0.16
SHMT2-212ENST00000554467 CCDC87Q9NVE4 849 aa14.04□□□□□ -0.16
SHMT2-212ENST00000554467 RBM8AQ9Y5S9 174 aaKnown RBP14.04□□□□□ -0.16
SHMT2-212ENST00000554467 SLIT2O94813 1529 aa14.04□□□□□ -0.16
SHMT2-212ENST00000554467 PALLDQ8WX93 1383 aa14.04□□□□□ -0.16
SHMT2-212ENST00000554467 WNK3Q9BYP7 1800 aa14.04□□□□□ -0.16
SHMT2-212ENST00000554467 CCDC171Q6TFL3 1326 aa14.04□□□□□ -0.16
SHMT2-212ENST00000554467 JAKMIP1Q96N16 626 aaKnown RBP14.04□□□□□ -0.16
SHMT2-212ENST00000554467 NCLP19338 710 aaKnown RBP14.03□□□□□ -0.16
SHMT2-212ENST00000554467 ITGA6P23229 1130 aa14.03□□□□□ -0.16
SHMT2-212ENST00000554467 IL6STP40189 918 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-212ENST00000554467 TRIM28Q13263 835 aaKnown RBP14.03□□□□□ -0.16
SHMT2-212ENST00000554467 CEP126Q9P2H0 1117 aa14.03□□□□□ -0.16
SHMT2-212ENST00000554467 FOXD4L6Q3SYB3 417 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-212ENST00000554467 FOXD4L3Q6VB84 417 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-212ENST00000554467 TTLL11Q8NHH1 800 aa14.03□□□□□ -0.16
SHMT2-212ENST00000554467 GOLGB1Q14789 3259 aaKnown RBP14.03□□□□□ -0.16
SHMT2-212ENST00000554467 PI16Q6UXB8 463 aa14.03□□□□□ -0.16
SHMT2-212ENST00000554467 HELBQ8NG08 1087 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-212ENST00000554467 CIZ1Q9ULV3 898 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-212ENST00000554467 EIF5P55010 431 aaKnown RBP14.02□□□□□ -0.16
SHMT2-212ENST00000554467 FKBP4Q02790 459 aaKnown RBP eCLIP14.02□□□□□ -0.16
SHMT2-212ENST00000554467 GORABQ5T7V8 394 aa14.02□□□□□ -0.16
SHMT2-212ENST00000554467 LRP6O75581 1613 aa14.02□□□□□ -0.16
SHMT2-212ENST00000554467 SNAP23O00161 211 aa14.02□□□□□ -0.17
SHMT2-212ENST00000554467 SUSD4Q5VX71 490 aa14.02□□□□□ -0.17
SHMT2-212ENST00000554467 LDHAL6AQ6ZMR3 332 aa14.02□□□□□ -0.17
SHMT2-212ENST00000554467 BARGINQ6ZT62 677 aa14.02□□□□□ -0.17
SHMT2-212ENST00000554467 HAUS7Q99871 368 aa14.02□□□□□ -0.17
SHMT2-212ENST00000554467 AK2P54819 239 aa14.02□□□□□ -0.17
SHMT2-212ENST00000554467 USP21Q9UK80 565 aa14.02□□□□□ -0.17
SHMT2-212ENST00000554467 BCL9LQ86UU0 1499 aa14.01□□□□□ -0.17
SHMT2-212ENST00000554467 CTSWP56202 376 aa14.01□□□□□ -0.17
SHMT2-212ENST00000554467 HSP90AB3PQ58FF7 597 aa14.01□□□□□ -0.17
SHMT2-212ENST00000554467 CREB3L3Q68CJ9 461 aa14.01□□□□□ -0.17
SHMT2-212ENST00000554467 CNNM1Q9NRU3 951 aa14.01□□□□□ -0.17
SHMT2-212ENST00000554467 MYH14Q7Z406 1995 aaKnown RBP14.01□□□□□ -0.17
SHMT2-212ENST00000554467 IFIT1P09914 478 aaKnown RBP14.01□□□□□ -0.17
SHMT2-212ENST00000554467 SCARF1Q14162 830 aa14.01□□□□□ -0.17
SHMT2-212ENST00000554467 METTL24Q5JXM2 366 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms