RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 KIFC2Q96AC6 838 aa7.55□□□□□ -1.2
VIPAS39-204ENST00000553576 DCTPP1Q9H773 170 aa7.55□□□□□ -1.2
VIPAS39-204ENST00000553576 FMNL1O95466 1100 aaPredicted RBP7.54□□□□□ -1.2
VIPAS39-204ENST00000553576 CCT4P50991 539 aaKnown RBP7.54□□□□□ -1.2
VIPAS39-204ENST00000553576 CHD1LQ86WJ1 897 aa7.54□□□□□ -1.2
VIPAS39-204ENST00000553576 ANKRD44Q8N8A2 993 aa7.54□□□□□ -1.2
VIPAS39-204ENST00000553576 ANKRD24Q8TF21 1146 aa7.54□□□□□ -1.2
VIPAS39-204ENST00000553576 LTV1Q96GA3 475 aaPredicted RBP7.54□□□□□ -1.2
VIPAS39-204ENST00000553576 MIS18AQ9NYP9 233 aa7.54□□□□□ -1.2
VIPAS39-204ENST00000553576 PXDNQ92626 1479 aa7.54□□□□□ -1.2
VIPAS39-204ENST00000553576 SPATA31A3Q5VYP0 1347 aa7.53□□□□□ -1.2
VIPAS39-204ENST00000553576 OATP04181 439 aa7.53□□□□□ -1.2
VIPAS39-204ENST00000553576 EIF4A1P60842 406 aaKnown RBP7.53□□□□□ -1.2
VIPAS39-204ENST00000553576 FUT2Q10981 343 aa7.53□□□□□ -1.2
VIPAS39-204ENST00000553576 ZSCAN1Q8NBB4 408 aa7.53□□□□□ -1.2
VIPAS39-204ENST00000553576 HPS1Q92902 700 aa7.53□□□□□ -1.2
VIPAS39-204ENST00000553576 MRGPRX2Q96LB1 330 aa7.53□□□□□ -1.2
VIPAS39-204ENST00000553576 STK31Q9BXU1 1019 aa7.53□□□□□ -1.2
VIPAS39-204ENST00000553576 SLC27A5Q9Y2P5 690 aa7.53□□□□□ -1.2
VIPAS39-204ENST00000553576 CPDO75976 1380 aa7.53□□□□□ -1.2
VIPAS39-204ENST00000553576 HEG1Q9ULI3 1381 aa7.53□□□□□ -1.2
VIPAS39-204ENST00000553576 PXDNLA1KZ92 1463 aa7.53□□□□□ -1.2
VIPAS39-204ENST00000553576 TNS3Q68CZ2 1445 aa7.52□□□□□ -1.2
VIPAS39-204ENST00000553576 RNMTO43148 476 aaKnown RBP7.52□□□□□ -1.21
VIPAS39-204ENST00000553576 GMPRP36959 345 aa7.52□□□□□ -1.21
VIPAS39-204ENST00000553576 TRIM32Q13049 653 aa7.52□□□□□ -1.21
VIPAS39-204ENST00000553576 ERICH6Q7L0X2 663 aa7.52□□□□□ -1.21
VIPAS39-204ENST00000553576 G2E3Q7L622 706 aa7.52□□□□□ -1.21
VIPAS39-204ENST00000553576 USHBP1Q8N6Y0 703 aa7.52□□□□□ -1.21
VIPAS39-204ENST00000553576 SLC16A10Q8TF71 515 aa7.52□□□□□ -1.21
VIPAS39-204ENST00000553576 LRRC59Q96AG4 307 aaKnown RBP7.52□□□□□ -1.21
VIPAS39-204ENST00000553576 LGR6Q9HBX8 967 aa7.52□□□□□ -1.21
VIPAS39-204ENST00000553576 PKD1L3Q7Z443 1732 aa7.52□□□□□ -1.21
VIPAS39-204ENST00000553576 ATP6V1AP38606 617 aa7.51□□□□□ -1.21
VIPAS39-204ENST00000553576 HSPA2P54652 639 aa7.51□□□□□ -1.21
VIPAS39-204ENST00000553576 XPCQ01831 940 aaPredicted RBP7.51□□□□□ -1.21
VIPAS39-204ENST00000553576 FLIIQ13045 1269 aa7.51□□□□□ -1.21
VIPAS39-204ENST00000553576 MSS51Q4VC12 460 aa7.51□□□□□ -1.21
VIPAS39-204ENST00000553576 BMP2KLQ5H9B9 411 aa7.51□□□□□ -1.21
VIPAS39-204ENST00000553576 ZNF530Q6P9A1 599 aaPredicted RBP7.51□□□□□ -1.21
VIPAS39-204ENST00000553576 BRICD5Q6PL45 260 aa7.51□□□□□ -1.21
VIPAS39-204ENST00000553576 METTL3Q86U44 580 aaKnown RBP7.51□□□□□ -1.21
VIPAS39-204ENST00000553576 ARHGEF1Q92888 912 aaKnown RBP7.51□□□□□ -1.21
VIPAS39-204ENST00000553576 ATP10DQ9P241 1426 aa7.51□□□□□ -1.21
VIPAS39-204ENST00000553576 SOS2Q07890 1332 aaPredicted RBP7.51□□□□□ -1.21
VIPAS39-204ENST00000553576 IBTKQ9P2D0 1353 aaPredicted RBP7.5□□□□□ -1.21
VIPAS39-204ENST00000553576 EIF5BO60841 1220 aaKnown RBP7.5□□□□□ -1.21
VIPAS39-204ENST00000553576 GNAI3P08754 354 aa7.5□□□□□ -1.21
VIPAS39-204ENST00000553576 C1orf141Q5JVX7 400 aa7.5□□□□□ -1.21
VIPAS39-204ENST00000553576 ANKRD45Q5TZF3 282 aa7.5□□□□□ -1.21
VIPAS39-204ENST00000553576 CEP85Q6P2H3 762 aa7.5□□□□□ -1.21
VIPAS39-204ENST00000553576 NPM2Q86SE8 214 aaKnown RBP7.5□□□□□ -1.21
VIPAS39-204ENST00000553576 RDH13Q8NBN7 331 aa7.5□□□□□ -1.21
VIPAS39-204ENST00000553576 TBC1D32Q96NH3 1257 aa7.5□□□□□ -1.21
VIPAS39-204ENST00000553576 NXF1Q9UBU9 619 aaKnown RBP7.5□□□□□ -1.21
VIPAS39-204ENST00000553576 NHSL1Q5SYE7 1610 aa7.49□□□□□ -1.21
VIPAS39-204ENST00000553576 BTBD11A6QL63 1104 aa7.49□□□□□ -1.21
VIPAS39-204ENST00000553576 HMMRO75330 724 aa7.49□□□□□ -1.21
VIPAS39-204ENST00000553576 ZC3H6P61129 1189 aaKnown RBP7.49□□□□□ -1.21
VIPAS39-204ENST00000553576 ATP8B2P98198 1209 aa7.49□□□□□ -1.21
VIPAS39-204ENST00000553576 TEFQ10587 303 aa7.49□□□□□ -1.21
VIPAS39-204ENST00000553576 BRINP3Q76B58 766 aa7.49□□□□□ -1.21
VIPAS39-204ENST00000553576 MEIS3Q99687 375 aa7.49□□□□□ -1.21
VIPAS39-204ENST00000553576 LNPKQ9C0E8 428 aa7.49□□□□□ -1.21
VIPAS39-204ENST00000553576 SLAIN2Q9P270 581 aa7.49□□□□□ -1.21
VIPAS39-204ENST00000553576 TUBGCP6Q96RT7 1819 aa7.49□□□□□ -1.21
VIPAS39-204ENST00000553576 GIGYF1O75420 1035 aaPredicted RBP7.48□□□□□ -1.21
VIPAS39-204ENST00000553576 GNAI2P04899 355 aa7.48□□□□□ -1.21
VIPAS39-204ENST00000553576 TATP17735 454 aaPredicted RBP7.48□□□□□ -1.21
VIPAS39-204ENST00000553576 HDGFL1Q5TGJ6 251 aa7.48□□□□□ -1.21
VIPAS39-204ENST00000553576 MPRIPQ6WCQ1 1025 aa7.48□□□□□ -1.21
VIPAS39-204ENST00000553576 RNF19BQ6ZMZ0 732 aa7.48□□□□□ -1.21
VIPAS39-204ENST00000553576 PLEKHM2Q8IWE5 1019 aa7.48□□□□□ -1.21
VIPAS39-204ENST00000553576 ABCA3Q99758 1704 aa7.48□□□□□ -1.21
VIPAS39-204ENST00000553576 C1orf115Q9H7X2 142 aa7.48□□□□□ -1.21
VIPAS39-204ENST00000553576 UPF2Q9HAU5 1272 aaKnown RBP7.48□□□□□ -1.21
VIPAS39-204ENST00000553576 PARP4Q9UKK3 1724 aaKnown RBP7.48□□□□□ -1.21
VIPAS39-204ENST00000553576 SPG7Q9UQ90 795 aa7.48□□□□□ -1.21
VIPAS39-204ENST00000553576 F6X3S4 739 aa7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 KCNQ3O43525 872 aa7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 HSP90AB1P08238 724 aaKnown RBP7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 PHKG2P15735 406 aa7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 FECHP22830 423 aa7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 FKBP5Q13451 457 aaPredicted RBP7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 IFNL2Q8IZJ0 200 aa7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 RAPGEF4Q8WZA2 1011 aa7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 IRF7Q92985 503 aa7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 REPIN1Q9BWE0 567 aaKnown RBP7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 USP44Q9H0E7 712 aa7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 OSBPL3Q9H4L5 887 aa7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 DBF4Q9UBU7 674 aaPredicted RBP7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 MRC1P22897 1456 aa7.47□□□□□ -1.21
VIPAS39-204ENST00000553576 ZBTB7CA1YPR0 619 aa7.46□□□□□ -1.22
VIPAS39-204ENST00000553576 RBM25P49756 843 aaKnown RBP7.46□□□□□ -1.22
VIPAS39-204ENST00000553576 SUZ12Q15022 739 aaKnown RBP7.46□□□□□ -1.22
VIPAS39-204ENST00000553576 SLC4A10Q6U841 1118 aa7.46□□□□□ -1.22
VIPAS39-204ENST00000553576 NPAS3Q8IXF0 933 aa7.46□□□□□ -1.22
VIPAS39-204ENST00000553576 DDX17Q92841 729 aaKnown RBP7.46□□□□□ -1.22
VIPAS39-204ENST00000553576 DCAF5Q96JK2 942 aa7.46□□□□□ -1.22
VIPAS39-204ENST00000553576 PHAXQ9H814 394 aaKnown RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms