RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 LARGE2Q8N3Y3 721 aa23.46■■□□□ 1.35
SHMT2-206ENST00000553529 GJA3Q9Y6H8 435 aa23.46■■□□□ 1.35
SHMT2-206ENST00000553529 PPIP5K2O43314 1243 aa23.45■■□□□ 1.34
SHMT2-206ENST00000553529 SF3B3Q15393 1217 aaKnown RBP23.45■■□□□ 1.34
SHMT2-206ENST00000553529 KSR2Q6VAB6 950 aa23.45■■□□□ 1.34
SHMT2-206ENST00000553529 WDR63Q8IWG1 891 aa23.45■■□□□ 1.34
SHMT2-206ENST00000553529 ZBTB38Q8NAP3 1195 aaPredicted RBP23.45■■□□□ 1.34
SHMT2-206ENST00000553529 SMC1BQ8NDV3 1235 aa23.45■■□□□ 1.34
SHMT2-206ENST00000553529 FSTL1Q12841 308 aa23.44■■□□□ 1.34
SHMT2-206ENST00000553529 CC2D2BQ6DHV5 1058 aa23.44■■□□□ 1.34
SHMT2-206ENST00000553529 SP8Q8IXZ3 490 aa23.44■■□□□ 1.34
SHMT2-206ENST00000553529 STK31Q9BXU1 1019 aa23.44■■□□□ 1.34
SHMT2-206ENST00000553529 CWC25Q9NXE8 425 aaPredicted RBP23.44■■□□□ 1.34
SHMT2-206ENST00000553529 SPEF2Q9C093 1822 aa23.44■■□□□ 1.34
SHMT2-206ENST00000553529 DNAJC5GQ8N7S2 189 aa23.43■■□□□ 1.34
SHMT2-206ENST00000553529 L3MBTL3Q96JM7 780 aaPredicted RBP23.43■■□□□ 1.34
SHMT2-206ENST00000553529 TAF1DQ9H5J8 278 aaPredicted RBP23.43■■□□□ 1.34
SHMT2-206ENST00000553529 SCN4AP35499 1836 aa23.43■■□□□ 1.34
SHMT2-206ENST00000553529 ADAMTSL1Q8N6G6 1762 aa23.42■■□□□ 1.34
SHMT2-206ENST00000553529 ZNF521Q96K83 1311 aa23.42■■□□□ 1.34
SHMT2-206ENST00000553529 BBOX1O75936 387 aa23.42■■□□□ 1.34
SHMT2-206ENST00000553529 PCCAP05165 728 aaPredicted RBP23.42■■□□□ 1.34
SHMT2-206ENST00000553529 APLP1P51693 650 aa23.42■■□□□ 1.34
SHMT2-206ENST00000553529 GPSM2P81274 684 aa23.42■■□□□ 1.34
SHMT2-206ENST00000553529 FLIIQ13045 1269 aa23.42■■□□□ 1.34
SHMT2-206ENST00000553529 DPP8Q6V1X1 898 aaPredicted RBP23.42■■□□□ 1.34
SHMT2-206ENST00000553529 MPNDQ8N594 471 aa23.42■■□□□ 1.34
SHMT2-206ENST00000553529 F6X3S4 739 aa23.41■■□□□ 1.34
SHMT2-206ENST00000553529 DDX58O95786 925 aaKnown RBP23.41■■□□□ 1.34
SHMT2-206ENST00000553529 NCBP3Q53F19 620 aaKnown RBP23.41■■□□□ 1.34
SHMT2-206ENST00000553529 EAPPQ56P03 285 aaPredicted RBP23.41■■□□□ 1.34
SHMT2-206ENST00000553529 CCDC191Q8NCU4 936 aa23.41■■□□□ 1.34
SHMT2-206ENST00000553529 JDP2Q8WYK2 163 aa23.41■■□□□ 1.34
SHMT2-206ENST00000553529 WTIPA6NIX2 430 aaPredicted RBP23.4■■□□□ 1.34
SHMT2-206ENST00000553529 NEURL1BA8MQ27 555 aa23.4■■□□□ 1.34
SHMT2-206ENST00000553529 RTFDC1Q9BY42 306 aaPredicted RBP23.4■■□□□ 1.34
SHMT2-206ENST00000553529 SHTN1A0MZ66 631 aa23.39■■□□□ 1.33
SHMT2-206ENST00000553529 YDJCA8MPS7 323 aa23.39■■□□□ 1.33
SHMT2-206ENST00000553529 SCNN1DP51172 638 aa23.39■■□□□ 1.33
SHMT2-206ENST00000553529 NIM1KQ8IY84 436 aa23.39■■□□□ 1.33
SHMT2-206ENST00000553529 POLLQ9UGP5 575 aa23.39■■□□□ 1.33
SHMT2-206ENST00000553529 RIMBP2O15034 1052 aa23.38■■□□□ 1.33
SHMT2-206ENST00000553529 EPHX2P34913 555 aa23.38■■□□□ 1.33
SHMT2-206ENST00000553529 EPS15P42566 896 aa23.38■■□□□ 1.33
SHMT2-206ENST00000553529 FKBP5Q13451 457 aaPredicted RBP23.38■■□□□ 1.33
SHMT2-206ENST00000553529 GPC2Q8N158 579 aa23.38■■□□□ 1.33
SHMT2-206ENST00000553529 NSFL1CQ9UNZ2 370 aaKnown RBP23.38■■□□□ 1.33
SHMT2-206ENST00000553529 EIF6P56537 245 aaKnown RBP23.37■■□□□ 1.33
SHMT2-206ENST00000553529 FMR1Q06787 632 aaKnown RBP eCLIP23.37■■□□□ 1.33
SHMT2-206ENST00000553529 CXCL9Q07325 125 aa23.37■■□□□ 1.33
SHMT2-206ENST00000553529 CHADLQ6NUI6 762 aa23.37■■□□□ 1.33
SHMT2-206ENST00000553529 KCNQ5Q9NR82 932 aa23.37■■□□□ 1.33
SHMT2-206ENST00000553529 HACL1Q9UJ83 578 aa23.37■■□□□ 1.33
SHMT2-206ENST00000553529 PDE8AO60658 829 aa23.36■■□□□ 1.33
SHMT2-206ENST00000553529 RAD17O75943 681 aa23.36■■□□□ 1.33
SHMT2-206ENST00000553529 UBE3BQ7Z3V4 1068 aa23.36■■□□□ 1.33
SHMT2-206ENST00000553529 RPS8P62241 208 aaKnown RBP23.35■■□□□ 1.33
SHMT2-206ENST00000553529 KIAA2012Q0VF49 1180 aa23.35■■□□□ 1.33
SHMT2-206ENST00000553529 MAP1SQ66K74 1059 aaPredicted RBP23.35■■□□□ 1.33
SHMT2-206ENST00000553529 CDCA7LQ96GN5 454 aa23.35■■□□□ 1.33
SHMT2-206ENST00000553529 GREM2Q9H772 168 aa23.35■■□□□ 1.33
SHMT2-206ENST00000553529 DBNDD1Q9H9R9 158 aa23.35■■□□□ 1.33
SHMT2-206ENST00000553529 MYH3P11055 1940 aa23.35■■□□□ 1.33
SHMT2-206ENST00000553529 IQCA1LA6NCM1 817 aa23.34■■□□□ 1.33
SHMT2-206ENST00000553529 CASP7P55210 303 aa23.34■■□□□ 1.33
SHMT2-206ENST00000553529 CTSWP56202 376 aa23.34■■□□□ 1.33
SHMT2-206ENST00000553529 DOK7Q18PE1 504 aa23.34■■□□□ 1.33
SHMT2-206ENST00000553529 DNAAF4Q8WXU2 420 aa23.34■■□□□ 1.33
SHMT2-206ENST00000553529 TMX4Q9H1E5 349 aaPredicted RBP23.34■■□□□ 1.33
SHMT2-206ENST00000553529 CDHR2Q9BYE9 1310 aa23.33■■□□□ 1.33
SHMT2-206ENST00000553529 GCKRQ14397 625 aa23.33■■□□□ 1.33
SHMT2-206ENST00000553529 ZNRF3Q9ULT6 936 aa23.33■■□□□ 1.33
SHMT2-206ENST00000553529 CLEC11AQ9Y240 323 aa23.33■■□□□ 1.33
SHMT2-206ENST00000553529 C6orf229H3BNL8 230 aa23.32■■□□□ 1.32
SHMT2-206ENST00000553529 H7C1W4 665 aa23.32■■□□□ 1.32
SHMT2-206ENST00000553529 GRIPAP1Q4V328 841 aa23.32■■□□□ 1.32
SHMT2-206ENST00000553529 TTLL11Q8NHH1 800 aa23.32■■□□□ 1.32
SHMT2-206ENST00000553529 TBC1D16Q8TBP0 767 aa23.32■■□□□ 1.32
SHMT2-206ENST00000553529 MYH16Q9H6N6 1097 aa23.32■■□□□ 1.32
SHMT2-206ENST00000553529 SCN9AQ15858 1988 aa23.32■■□□□ 1.32
SHMT2-206ENST00000553529 GMPSP49915 693 aaPredicted RBP23.31■■□□□ 1.32
SHMT2-206ENST00000553529 NEXNQ0ZGT2 675 aa23.31■■□□□ 1.32
SHMT2-206ENST00000553529 CCDC152Q4G0S7 254 aa23.31■■□□□ 1.32
SHMT2-206ENST00000553529 LDHDQ86WU2 507 aa23.31■■□□□ 1.32
SHMT2-206ENST00000553529 SUPT20HQ8NEM7 779 aa23.31■■□□□ 1.32
SHMT2-206ENST00000553529 ZBTB12Q9Y330 459 aaPredicted RBP23.31■■□□□ 1.32
SHMT2-206ENST00000553529 ITGBL1O95965 494 aaPredicted RBP23.3■■□□□ 1.32
SHMT2-206ENST00000553529 KLRG1Q96E93 195 aa23.3■■□□□ 1.32
SHMT2-206ENST00000553529 RTL9Q8NET4 1388 aa23.29■■□□□ 1.32
SHMT2-206ENST00000553529 WASHC4Q2M389 1173 aa23.29■■□□□ 1.32
SHMT2-206ENST00000553529 FAM161AQ3B820 660 aa23.29■■□□□ 1.32
SHMT2-206ENST00000553529 BEND3Q5T5X7 828 aa23.29■■□□□ 1.32
SHMT2-206ENST00000553529 PASKQ96RG2 1323 aa23.29■■□□□ 1.32
SHMT2-206ENST00000553529 CACNA1FO60840 1977 aa23.29■■□□□ 1.32
SHMT2-206ENST00000553529 UFL1O94874 794 aa23.28■■□□□ 1.32
SHMT2-206ENST00000553529 BCL2L13Q9BXK5 485 aa23.28■■□□□ 1.32
SHMT2-206ENST00000553529 EPHA10Q5JZY3 1008 aa23.27■■□□□ 1.32
SHMT2-206ENST00000553529 CIAPIN1Q6FI81 312 aa23.27■■□□□ 1.32
SHMT2-206ENST00000553529 TMC4Q7Z404 712 aa23.27■■□□□ 1.32
SHMT2-206ENST00000553529 GPRC5DQ9NZD1 345 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms