RNA–Protein interactions for RNA: ENST00000552890.5

TRAFD1-208, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 2

Gene TRAFD1, Length 1,043 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-208ENST00000552890 F6X3S4 739 aa12.9□□□□□ -0.34
TRAFD1-208ENST00000552890 PPEF1O14829 653 aaPredicted RBP12.9□□□□□ -0.34
TRAFD1-208ENST00000552890 IGHMBP2P38935 993 aaKnown RBP12.9□□□□□ -0.34
TRAFD1-208ENST00000552890 ANKRD18AQ8IVF6 992 aa12.9□□□□□ -0.34
TRAFD1-208ENST00000552890 CCDC24Q8N4L8 307 aa12.9□□□□□ -0.34
TRAFD1-208ENST00000552890 FRAT1Q92837 279 aaPredicted RBP12.9□□□□□ -0.34
TRAFD1-208ENST00000552890 PSMD1Q99460 953 aa12.9□□□□□ -0.34
TRAFD1-208ENST00000552890 BCL2L13Q9BXK5 485 aa12.9□□□□□ -0.34
TRAFD1-208ENST00000552890 TAOK3Q9H2K8 898 aa12.9□□□□□ -0.34
TRAFD1-208ENST00000552890 RCAN3Q9UKA8 241 aa12.9□□□□□ -0.34
TRAFD1-208ENST00000552890 ATP6V0A2Q9Y487 856 aa12.9□□□□□ -0.34
TRAFD1-208ENST00000552890 BRCA1P38398 1863 aaKnown RBP12.89□□□□□ -0.35
TRAFD1-208ENST00000552890 C21orf2O43822 256 aa12.89□□□□□ -0.35
TRAFD1-208ENST00000552890 IFIT5Q13325 482 aaKnown RBP12.89□□□□□ -0.35
TRAFD1-208ENST00000552890 CCDC57Q2TAC2 916 aa12.89□□□□□ -0.35
TRAFD1-208ENST00000552890 INTS3Q68E01 1043 aaKnown RBP12.89□□□□□ -0.35
TRAFD1-208ENST00000552890 MPHOSPH8Q99549 860 aa12.89□□□□□ -0.35
TRAFD1-208ENST00000552890 CHD4Q14839 1912 aa12.89□□□□□ -0.35
TRAFD1-208ENST00000552890 ANKRD31Q8N7Z5 1873 aa12.89□□□□□ -0.35
TRAFD1-208ENST00000552890 ANKRD18BA2A2Z9 1011 aa12.88□□□□□ -0.35
TRAFD1-208ENST00000552890 CSF1RP07333 972 aa12.88□□□□□ -0.35
TRAFD1-208ENST00000552890 UBTFL1P0CB47 393 aaPredicted RBP12.88□□□□□ -0.35
TRAFD1-208ENST00000552890 FKBP4Q02790 459 aaKnown RBP eCLIP12.88□□□□□ -0.35
TRAFD1-208ENST00000552890 TAF7LQ5H9L4 462 aa12.88□□□□□ -0.35
TRAFD1-208ENST00000552890 RTL5Q5HYW3 569 aaPredicted RBP12.88□□□□□ -0.35
TRAFD1-208ENST00000552890 TTLL11Q8NHH1 800 aa12.88□□□□□ -0.35
TRAFD1-208ENST00000552890 C7orf43Q8WVR3 580 aa12.88□□□□□ -0.35
TRAFD1-208ENST00000552890 EYA3Q99504 573 aa12.88□□□□□ -0.35
TRAFD1-208ENST00000552890 KIAA1551Q9HCM1 1747 aa12.88□□□□□ -0.35
TRAFD1-208ENST00000552890 ABCC4O15439 1325 aa12.88□□□□□ -0.35
TRAFD1-208ENST00000552890 YY1P25490 414 aa12.87□□□□□ -0.35
TRAFD1-208ENST00000552890 DPY19L2Q6NUT2 758 aa12.87□□□□□ -0.35
TRAFD1-208ENST00000552890 DPP8Q6V1X1 898 aaPredicted RBP12.87□□□□□ -0.35
TRAFD1-208ENST00000552890 DZIP1LQ8IYY4 767 aaKnown RBP12.87□□□□□ -0.35
TRAFD1-208ENST00000552890 JDP2Q8WYK2 163 aa12.87□□□□□ -0.35
TRAFD1-208ENST00000552890 ANKRD2Q9GZV1 360 aa12.87□□□□□ -0.35
TRAFD1-208ENST00000552890 BSDC1Q9NW68 430 aaPredicted RBP12.87□□□□□ -0.35
TRAFD1-208ENST00000552890 LAMB2P55268 1798 aa12.86□□□□□ -0.35
TRAFD1-208ENST00000552890 MPNDQ8N594 471 aa12.86□□□□□ -0.35
TRAFD1-208ENST00000552890 FBXO3Q9UK99 471 aa12.86□□□□□ -0.35
TRAFD1-208ENST00000552890 BCAR3O75815 825 aa12.85□□□□□ -0.35
TRAFD1-208ENST00000552890 TRIM27P14373 513 aa12.85□□□□□ -0.35
TRAFD1-208ENST00000552890 CASP7P55210 303 aa12.85□□□□□ -0.35
TRAFD1-208ENST00000552890 PDE3AQ14432 1141 aa12.85□□□□□ -0.35
TRAFD1-208ENST00000552890 KDM2BQ8NHM5 1336 aa12.85□□□□□ -0.35
TRAFD1-208ENST00000552890 MYH3P11055 1940 aa12.84□□□□□ -0.35
TRAFD1-208ENST00000552890 ITGA6P23229 1130 aa12.84□□□□□ -0.35
TRAFD1-208ENST00000552890 SYNE4Q8N205 404 aa12.84□□□□□ -0.35
TRAFD1-208ENST00000552890 RTFDC1Q9BY42 306 aaPredicted RBP12.84□□□□□ -0.35
TRAFD1-208ENST00000552890 USP44Q9H0E7 712 aa12.84□□□□□ -0.35
TRAFD1-208ENST00000552890 PODXL2Q9NZ53 605 aa12.84□□□□□ -0.35
TRAFD1-208ENST00000552890 RNF181Q9P0P0 153 aa12.84□□□□□ -0.35
TRAFD1-208ENST00000552890 ANKIB1Q9P2G1 1089 aa12.84□□□□□ -0.35
TRAFD1-208ENST00000552890 CHMP3Q9Y3E7 222 aa12.84□□□□□ -0.35
TRAFD1-208ENST00000552890 XDHP47989 1333 aa12.84□□□□□ -0.35
TRAFD1-208ENST00000552890 GNAI2P04899 355 aa12.83□□□□□ -0.36
TRAFD1-208ENST00000552890 ATP2B4P23634 1241 aa12.83□□□□□ -0.36
TRAFD1-208ENST00000552890 RABL6Q3YEC7 729 aaPredicted RBP12.83□□□□□ -0.36
TRAFD1-208ENST00000552890 C9orf131Q5VYM1 1079 aa12.83□□□□□ -0.36
TRAFD1-208ENST00000552890 LMBR1LQ6UX01 489 aa12.83□□□□□ -0.36
TRAFD1-208ENST00000552890 YTHDC1Q96MU7 727 aaKnown RBP12.83□□□□□ -0.36
TRAFD1-208ENST00000552890 WWC3Q9ULE0 1092 aa12.83□□□□□ -0.36
TRAFD1-208ENST00000552890 LEMD3Q9Y2U8 911 aa12.83□□□□□ -0.36
TRAFD1-208ENST00000552890 COL11A2P13942 1736 aaPredicted RBP12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 DDX60Q8IY21 1712 aaKnown RBP12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 G3V3G9 751 aa12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 IARSP41252 1262 aaKnown RBP12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 FOXO4P98177 505 aa12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 AAMPQ13685 434 aa12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 DCAF8Q5TAQ9 597 aa12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 C3orf67Q6ZVT6 689 aa12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 ZC3H12CQ9C0D7 883 aaKnown RBP12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 GREM2Q9H772 168 aa12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 ZNF219Q9P2Y4 722 aaPredicted RBP12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 GGA1Q9UJY5 639 aa12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 DDX19BQ9UMR2 479 aa12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 NSFL1CQ9UNZ2 370 aaKnown RBP12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 SLX4Q8IY92 1834 aa12.82□□□□□ -0.36
TRAFD1-208ENST00000552890 TNRC6CQ9HCJ0 1690 aaKnown RBP12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 NFKBIEO00221 500 aa12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 NBPF7P0C2Y1 421 aaPredicted RBP12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 MMP14P50281 582 aa12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 EIF6P56537 245 aaKnown RBP12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 WASHC4Q2M389 1173 aa12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 LDHAL6AQ6ZMR3 332 aa12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 ITPRIPQ8IWB1 547 aa12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 NIM1KQ8IY84 436 aa12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 LARGE2Q8N3Y3 721 aa12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 CELF1Q92879 486 aaKnown RBP12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 CNNM1Q9NRU3 951 aa12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 MROH5Q6ZUA9 1318 aa12.81□□□□□ -0.36
TRAFD1-208ENST00000552890 C6orf229H3BNL8 230 aa12.8□□□□□ -0.36
TRAFD1-208ENST00000552890 KCNJ4P48050 445 aa12.8□□□□□ -0.36
TRAFD1-208ENST00000552890 KIAA2012Q0VF49 1180 aa12.8□□□□□ -0.36
TRAFD1-208ENST00000552890 FAM161AQ3B820 660 aa12.8□□□□□ -0.36
TRAFD1-208ENST00000552890 BICC1Q9H694 974 aaKnown RBP12.8□□□□□ -0.36
TRAFD1-208ENST00000552890 FER1L6Q2WGJ9 1857 aa12.8□□□□□ -0.36
TRAFD1-208ENST00000552890 IQCA1LA6NCM1 817 aa12.79□□□□□ -0.36
TRAFD1-208ENST00000552890 PPIP5K2O43314 1243 aa12.79□□□□□ -0.36
TRAFD1-208ENST00000552890 TNIP1Q15025 636 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms