RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 HACL1Q9UJ83 578 aa14.17□□□□□ -0.14
VPS29-208ENST00000550267 SCN4AP35499 1836 aa14.17□□□□□ -0.14
VPS29-208ENST00000550267 BCORQ6W2J9 1755 aa14.17□□□□□ -0.14
VPS29-208ENST00000550267 GNAT3A8MTJ3 354 aa14.16□□□□□ -0.14
VPS29-208ENST00000550267 KCNQ3O43525 872 aa14.16□□□□□ -0.14
VPS29-208ENST00000550267 HRO43593 1189 aa14.16□□□□□ -0.14
VPS29-208ENST00000550267 HSPA8P11142 646 aaKnown RBP14.16□□□□□ -0.14
VPS29-208ENST00000550267 EPHX2P34913 555 aa14.16□□□□□ -0.14
VPS29-208ENST00000550267 PIP4K2AP48426 406 aaPredicted RBP14.16□□□□□ -0.14
VPS29-208ENST00000550267 PSEN2P49810 448 aa14.16□□□□□ -0.14
VPS29-208ENST00000550267 FKBP4Q02790 459 aaKnown RBP eCLIP14.16□□□□□ -0.14
VPS29-208ENST00000550267 DMRTA1Q5VZB9 504 aa14.16□□□□□ -0.14
VPS29-208ENST00000550267 OLFM4Q6UX06 510 aa14.16□□□□□ -0.14
VPS29-208ENST00000550267 RYDENQ9NUL5 291 aaKnown RBP14.16□□□□□ -0.14
VPS29-208ENST00000550267 SIPA1L3O60292 1781 aaPredicted RBP14.15□□□□□ -0.14
VPS29-208ENST00000550267 ADAMTSL1Q8N6G6 1762 aa14.15□□□□□ -0.14
VPS29-208ENST00000550267 DEFB115Q30KQ5 88 aa14.15□□□□□ -0.14
VPS29-208ENST00000550267 MAP1SQ66K74 1059 aaPredicted RBP14.15□□□□□ -0.14
VPS29-208ENST00000550267 NBPF5PQ86XG9 351 aaPredicted RBP14.15□□□□□ -0.14
VPS29-208ENST00000550267 RNF123Q5XPI4 1314 aa14.15□□□□□ -0.15
VPS29-208ENST00000550267 RASSF10A6NK89 507 aa14.14□□□□□ -0.15
VPS29-208ENST00000550267 NPR1P16066 1061 aa14.14□□□□□ -0.15
VPS29-208ENST00000550267 TRIM26Q12899 539 aaPredicted RBP14.14□□□□□ -0.15
VPS29-208ENST00000550267 CNTROBQ8N137 903 aa14.14□□□□□ -0.15
VPS29-208ENST00000550267 GAS2L2Q8NHY3 880 aa14.14□□□□□ -0.15
VPS29-208ENST00000550267 ABHD8Q96I13 439 aa14.14□□□□□ -0.15
VPS29-208ENST00000550267 USP16Q9Y5T5 823 aa14.14□□□□□ -0.15
VPS29-208ENST00000550267 U2SURPO15042 1029 aaKnown RBP14.13□□□□□ -0.15
VPS29-208ENST00000550267 FAM161AQ3B820 660 aa14.13□□□□□ -0.15
VPS29-208ENST00000550267 CC2D1BQ5T0F9 858 aaKnown RBP14.13□□□□□ -0.15
VPS29-208ENST00000550267 OXER1Q8TDS5 423 aa14.13□□□□□ -0.15
VPS29-208ENST00000550267 WDR33Q9C0J8 1336 aaKnown RBP14.13□□□□□ -0.15
VPS29-208ENST00000550267 COL3A1P02461 1466 aaPredicted RBP14.12□□□□□ -0.15
VPS29-208ENST00000550267 PRAMEF22A3QJZ6 481 aa14.12□□□□□ -0.15
VPS29-208ENST00000550267 FAM177BA6PVY3 158 aa14.12□□□□□ -0.15
VPS29-208ENST00000550267 BTBD11A6QL63 1104 aa14.12□□□□□ -0.15
VPS29-208ENST00000550267 IARSP41252 1262 aaKnown RBP14.12□□□□□ -0.15
VPS29-208ENST00000550267 PNMA8AQ86V59 439 aaPredicted RBP14.12□□□□□ -0.15
VPS29-208ENST00000550267 RTKN2Q8IZC4 609 aa14.12□□□□□ -0.15
VPS29-208ENST00000550267 ABT1Q9ULW3 272 aaKnown RBP14.12□□□□□ -0.15
VPS29-208ENST00000550267 CEMIPQ8WUJ3 1361 aa14.11□□□□□ -0.15
VPS29-208ENST00000550267 KLRG2A4D1S0 409 aaPredicted RBP14.11□□□□□ -0.15
VPS29-208ENST00000550267 FZD9O00144 591 aa14.11□□□□□ -0.15
VPS29-208ENST00000550267 CLEC4GQ6UXB4 293 aa14.11□□□□□ -0.15
VPS29-208ENST00000550267 SYNE4Q8N205 404 aa14.11□□□□□ -0.15
VPS29-208ENST00000550267 ZNF652Q9Y2D9 606 aa14.11□□□□□ -0.15
VPS29-208ENST00000550267 CLSPNQ9HAW4 1339 aa14.11□□□□□ -0.15
VPS29-208ENST00000550267 MAP2K1Q02750 393 aaPredicted RBP14.1□□□□□ -0.15
VPS29-208ENST00000550267 PCGF6Q9BYE7 350 aa14.1□□□□□ -0.15
VPS29-208ENST00000550267 CRISPLD2Q9H0B8 497 aa14.1□□□□□ -0.15
VPS29-208ENST00000550267 PLA2G2EQ9NZK7 142 aa14.1□□□□□ -0.15
VPS29-208ENST00000550267 NIP7Q9Y221 180 aaKnown RBP eCLIP14.1□□□□□ -0.15
VPS29-208ENST00000550267 FMR1Q06787 632 aaKnown RBP eCLIP14.09□□□□□ -0.15
VPS29-208ENST00000550267 CNGB1Q14028 1251 aaPredicted RBP14.09□□□□□ -0.15
VPS29-208ENST00000550267 TPTE2Q6XPS3 522 aa14.09□□□□□ -0.15
VPS29-208ENST00000550267 GPC2Q8N158 579 aa14.09□□□□□ -0.15
VPS29-208ENST00000550267 DDX21Q9NR30 783 aaKnown RBP eCLIP14.09□□□□□ -0.15
VPS29-208ENST00000550267 KIF7Q2M1P5 1343 aa14.09□□□□□ -0.15
VPS29-208ENST00000550267 PER1O15534 1290 aaPredicted RBP14.08□□□□□ -0.16
VPS29-208ENST00000550267 ALDH1B1P30837 517 aa14.08□□□□□ -0.16
VPS29-208ENST00000550267 PHACTR3Q96KR7 559 aa14.08□□□□□ -0.16
VPS29-208ENST00000550267 GJA3Q9Y6H8 435 aa14.08□□□□□ -0.16
VPS29-208ENST00000550267 COL4A5P29400 1685 aa14.07□□□□□ -0.16
VPS29-208ENST00000550267 SNED1Q8TER0 1413 aa14.07□□□□□ -0.16
VPS29-208ENST00000550267 LTBP1Q14766 1721 aa14.07□□□□□ -0.16
VPS29-208ENST00000550267 CCDC85CA6NKD9 419 aa14.07□□□□□ -0.16
VPS29-208ENST00000550267 NBPF26B4DH59 902 aa14.07□□□□□ -0.16
VPS29-208ENST00000550267 SNRPA1P09661 255 aaKnown RBP14.07□□□□□ -0.16
VPS29-208ENST00000550267 GRM1Q13255 1194 aa14.07□□□□□ -0.16
VPS29-208ENST00000550267 NBPF10Q6P3W6 841 aaKnown RBP14.07□□□□□ -0.16
VPS29-208ENST00000550267 PAXIP1Q6ZW49 1069 aaPredicted RBP14.07□□□□□ -0.16
VPS29-208ENST00000550267 NBPF15Q8N660 670 aa14.07□□□□□ -0.16
VPS29-208ENST00000550267 CAPNS2Q96L46 248 aa14.07□□□□□ -0.16
VPS29-208ENST00000550267 THSD7BQ9C0I4 1608 aa14.07□□□□□ -0.16
VPS29-208ENST00000550267 PRKAR2BP31323 418 aa14.06□□□□□ -0.16
VPS29-208ENST00000550267 EIF6P56537 245 aaKnown RBP14.06□□□□□ -0.16
VPS29-208ENST00000550267 HLFQ16534 295 aa14.06□□□□□ -0.16
VPS29-208ENST00000550267 CYP4F22Q6NT55 531 aa14.06□□□□□ -0.16
VPS29-208ENST00000550267 JDP2Q8WYK2 163 aa14.06□□□□□ -0.16
VPS29-208ENST00000550267 PSMD1Q99460 953 aa14.06□□□□□ -0.16
VPS29-208ENST00000550267 GTF2E1P29083 439 aaPredicted RBP14.05□□□□□ -0.16
VPS29-208ENST00000550267 LMOD1P29536 600 aaPredicted RBP14.05□□□□□ -0.16
VPS29-208ENST00000550267 EPS15P42566 896 aa14.05□□□□□ -0.16
VPS29-208ENST00000550267 KCNK17Q96T54 332 aa14.05□□□□□ -0.16
VPS29-208ENST00000550267 ABCC12Q96J65 1359 aa14.05□□□□□ -0.16
VPS29-208ENST00000550267 TRAF5O00463 557 aa14.04□□□□□ -0.16
VPS29-208ENST00000550267 ECE1P42892 770 aa14.04□□□□□ -0.16
VPS29-208ENST00000550267 SCNN1DP51172 638 aa14.04□□□□□ -0.16
VPS29-208ENST00000550267 MLLT1Q03111 559 aaPredicted RBP14.04□□□□□ -0.16
VPS29-208ENST00000550267 PPP1R15BQ5SWA1 713 aa14.04□□□□□ -0.16
VPS29-208ENST00000550267 MCM10Q7L590 875 aa14.04□□□□□ -0.16
VPS29-208ENST00000550267 SLC51AQ86UW1 340 aa14.04□□□□□ -0.16
VPS29-208ENST00000550267 NUTM1Q86Y26 1132 aa14.04□□□□□ -0.16
VPS29-208ENST00000550267 GPR101Q96P66 508 aaPredicted RBP14.04□□□□□ -0.16
VPS29-208ENST00000550267 BEGAINQ9BUH8 593 aa14.04□□□□□ -0.16
VPS29-208ENST00000550267 RSPH6AQ9H0K4 717 aa14.04□□□□□ -0.16
VPS29-208ENST00000550267 TSKSQ9UJT2 592 aa14.04□□□□□ -0.16
VPS29-208ENST00000550267 CRY2Q49AN0 593 aa14.03□□□□□ -0.16
VPS29-208ENST00000550267 CST9Q5W186 159 aa14.03□□□□□ -0.16
VPS29-208ENST00000550267 AOC2O75106 756 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms