RNA–Protein interactions for RNA: ENST00000550208.1

BRF1-216, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 3

Gene BRF1, Length 1,040 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-216ENST00000550208 NBPF7P0C2Y1 421 aaPredicted RBP28.47■■■□□ 2.15
BRF1-216ENST00000550208 CCT4P50991 539 aaKnown RBP28.47■■■□□ 2.15
BRF1-216ENST00000550208 CTSWP56202 376 aa28.47■■■□□ 2.15
BRF1-216ENST00000550208 GRAPQ13588 217 aa28.47■■■□□ 2.15
BRF1-216ENST00000550208 CCDC152Q4G0S7 254 aa28.47■■■□□ 2.15
BRF1-216ENST00000550208 ZKSCAN2Q63HK3 967 aa28.47■■■□□ 2.15
BRF1-216ENST00000550208 GRAPLQ8TC17 118 aaPredicted RBP28.47■■■□□ 2.15
BRF1-216ENST00000550208 SEC31BQ9NQW1 1179 aa28.47■■■□□ 2.15
BRF1-216ENST00000550208 PPEF1O14829 653 aaPredicted RBP28.46■■■□□ 2.15
BRF1-216ENST00000550208 BBOX1O75936 387 aa28.46■■■□□ 2.15
BRF1-216ENST00000550208 SLC51AQ86UW1 340 aa28.46■■■□□ 2.15
BRF1-216ENST00000550208 CELF1Q92879 486 aaKnown RBP28.46■■■□□ 2.15
BRF1-216ENST00000550208 USP44Q9H0E7 712 aa28.46■■■□□ 2.15
BRF1-216ENST00000550208 RCAN3Q9UKA8 241 aa28.46■■■□□ 2.15
BRF1-216ENST00000550208 TAF1P21675 1872 aa28.46■■■□□ 2.15
BRF1-216ENST00000550208 CLUAP1Q96AJ1 413 aa28.45■■■□□ 2.14
BRF1-216ENST00000550208 GOLGB1Q14789 3259 aaKnown RBP28.44■■■□□ 2.14
BRF1-216ENST00000550208 FOXO4P98177 505 aa28.44■■■□□ 2.14
BRF1-216ENST00000550208 EPHA10Q5JZY3 1008 aa28.44■■■□□ 2.14
BRF1-216ENST00000550208 UTYO14607 1347 aa28.43■■■□□ 2.14
BRF1-216ENST00000550208 CSF1RP07333 972 aa28.43■■■□□ 2.14
BRF1-216ENST00000550208 RASSF7Q02833 373 aa28.43■■■□□ 2.14
BRF1-216ENST00000550208 SOGA3Q5TF21 947 aa28.43■■■□□ 2.14
BRF1-216ENST00000550208 INTS3Q68E01 1043 aaKnown RBP28.43■■■□□ 2.14
BRF1-216ENST00000550208 NFKBIEO00221 500 aa28.42■■■□□ 2.14
BRF1-216ENST00000550208 CCDC93Q567U6 631 aa28.42■■■□□ 2.14
BRF1-216ENST00000550208 SUCLG2Q96I99 432 aa28.42■■■□□ 2.14
BRF1-216ENST00000550208 GREM2Q9H772 168 aa28.42■■■□□ 2.14
BRF1-216ENST00000550208 RPS8P62241 208 aaKnown RBP28.41■■■□□ 2.14
BRF1-216ENST00000550208 SP8Q8IXZ3 490 aa28.41■■■□□ 2.14
BRF1-216ENST00000550208 KAZALD1Q96I82 304 aa28.41■■■□□ 2.14
BRF1-216ENST00000550208 ATP6V0A2Q9Y487 856 aa28.41■■■□□ 2.14
BRF1-216ENST00000550208 PRELPP51888 382 aa28.4■■■□□ 2.14
BRF1-216ENST00000550208 COL4A1P02462 1669 aa28.39■■■□□ 2.14
BRF1-216ENST00000550208 CC2D2BQ6DHV5 1058 aa28.39■■■□□ 2.14
BRF1-216ENST00000550208 LMBR1LQ6UX01 489 aa28.39■■■□□ 2.14
BRF1-216ENST00000550208 RTKN2Q8IZC4 609 aa28.39■■■□□ 2.14
BRF1-216ENST00000550208 CHD4Q14839 1912 aa28.39■■■□□ 2.13
BRF1-216ENST00000550208 MYH3P11055 1940 aa28.37■■■□□ 2.13
BRF1-216ENST00000550208 DZIP1LQ8IYY4 767 aaKnown RBP28.37■■■□□ 2.13
BRF1-216ENST00000550208 TMEM57Q8N5G2 664 aa28.37■■■□□ 2.13
BRF1-216ENST00000550208 TMX4Q9H1E5 349 aaPredicted RBP28.37■■■□□ 2.13
BRF1-216ENST00000550208 ITGA6P23229 1130 aa28.36■■■□□ 2.13
BRF1-216ENST00000550208 FAM161AQ3B820 660 aa28.36■■■□□ 2.13
BRF1-216ENST00000550208 C9orf131Q5VYM1 1079 aa28.36■■■□□ 2.13
BRF1-216ENST00000550208 TMC4Q7Z404 712 aa28.36■■■□□ 2.13
BRF1-216ENST00000550208 ANKRD18AQ8IVF6 992 aa28.36■■■□□ 2.13
BRF1-216ENST00000550208 TAOK3Q9H2K8 898 aa28.36■■■□□ 2.13
BRF1-216ENST00000550208 CHMP3Q9Y3E7 222 aa28.36■■■□□ 2.13
BRF1-216ENST00000550208 FER1L6Q2WGJ9 1857 aa28.36■■■□□ 2.13
BRF1-216ENST00000550208 RTL9Q8NET4 1388 aa28.36■■■□□ 2.13
BRF1-216ENST00000550208 PLIN1O60240 522 aa28.35■■■□□ 2.13
BRF1-216ENST00000550208 RLBP1P12271 317 aa28.35■■■□□ 2.13
BRF1-216ENST00000550208 YY1P25490 414 aa28.35■■■□□ 2.13
BRF1-216ENST00000550208 FKBP4Q02790 459 aaKnown RBP eCLIP28.35■■■□□ 2.13
BRF1-216ENST00000550208 CDC5LQ99459 802 aaKnown RBP28.34■■■□□ 2.13
BRF1-216ENST00000550208 MEIS3Q99687 375 aa28.34■■■□□ 2.13
BRF1-216ENST00000550208 BICC1Q9H694 974 aaKnown RBP28.34■■■□□ 2.13
BRF1-216ENST00000550208 LTBP3Q9NS15 1303 aa28.34■■■□□ 2.13
BRF1-216ENST00000550208 UTRNP46939 3433 aa28.34■■■□□ 2.13
BRF1-216ENST00000550208 LMNB1P20700 586 aa28.33■■■□□ 2.13
BRF1-216ENST00000550208 GRIPAP1Q4V328 841 aa28.33■■■□□ 2.13
BRF1-216ENST00000550208 FTSJ3Q8IY81 847 aaKnown RBP28.33■■■□□ 2.13
BRF1-216ENST00000550208 ANKRD44Q8N8A2 993 aa28.33■■■□□ 2.13
BRF1-216ENST00000550208 RNF181Q9P0P0 153 aa28.33■■■□□ 2.13
BRF1-216ENST00000550208 SNED1Q8TER0 1413 aa28.33■■■□□ 2.13
BRF1-216ENST00000550208 SBF1O95248 1867 aa28.32■■■□□ 2.12
BRF1-216ENST00000550208 ANKRD18BA2A2Z9 1011 aa28.32■■■□□ 2.12
BRF1-216ENST00000550208 UBTFL1P0CB47 393 aaPredicted RBP28.32■■■□□ 2.12
BRF1-216ENST00000550208 MPNDQ8N594 471 aa28.32■■■□□ 2.12
BRF1-216ENST00000550208 IFIT5Q13325 482 aaKnown RBP28.31■■■□□ 2.12
BRF1-216ENST00000550208 PANK1Q8TE04 598 aa28.31■■■□□ 2.12
BRF1-216ENST00000550208 PSMD1Q99460 953 aa28.31■■■□□ 2.12
BRF1-216ENST00000550208 ZNF277Q9NRM2 450 aaPredicted RBP28.31■■■□□ 2.12
BRF1-216ENST00000550208 GPSM2P81274 684 aa28.3■■■□□ 2.12
BRF1-216ENST00000550208 RABL6Q3YEC7 729 aaPredicted RBP28.3■■■□□ 2.12
BRF1-216ENST00000550208 IGHMBP2P38935 993 aaKnown RBP28.29■■■□□ 2.12
BRF1-216ENST00000550208 DPP8Q6V1X1 898 aaPredicted RBP28.29■■■□□ 2.12
BRF1-216ENST00000550208 BSDC1Q9NW68 430 aaPredicted RBP28.29■■■□□ 2.12
BRF1-216ENST00000550208 NSFL1CQ9UNZ2 370 aaKnown RBP28.29■■■□□ 2.12
BRF1-216ENST00000550208 CCDC88AQ3V6T2 1871 aa28.29■■■□□ 2.12
BRF1-216ENST00000550208 GNAI3P08754 354 aa28.28■■■□□ 2.12
BRF1-216ENST00000550208 CCDC57Q2TAC2 916 aa28.28■■■□□ 2.12
BRF1-216ENST00000550208 ZNF594Q96JF6 807 aaPredicted RBP28.28■■■□□ 2.12
BRF1-216ENST00000550208 LRRFIP2Q9Y608 721 aaKnown RBP28.28■■■□□ 2.12
BRF1-216ENST00000550208 RTFDC1Q9BY42 306 aaPredicted RBP28.27■■■□□ 2.12
BRF1-216ENST00000550208 MS4A1P11836 297 aa28.26■■■□□ 2.11
BRF1-216ENST00000550208 ITPRIPQ8IWB1 547 aa28.26■■■□□ 2.11
BRF1-216ENST00000550208 MPHOSPH8Q99549 860 aa28.26■■■□□ 2.11
BRF1-216ENST00000550208 MINPP1Q9UNW1 487 aa28.26■■■□□ 2.11
BRF1-216ENST00000550208 HDAC5Q9UQL6 1122 aa28.26■■■□□ 2.11
BRF1-216ENST00000550208 IARSP41252 1262 aaKnown RBP28.25■■■□□ 2.11
BRF1-216ENST00000550208 TAF7LQ5H9L4 462 aa28.24■■■□□ 2.11
BRF1-216ENST00000550208 POLLQ9UGP5 575 aa28.24■■■□□ 2.11
BRF1-216ENST00000550208 ZBTB7BO15156 539 aaPredicted RBP28.23■■■□□ 2.11
BRF1-216ENST00000550208 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.23■■■□□ 2.11
BRF1-216ENST00000550208 SUPT20HQ8NEM7 779 aa28.23■■■□□ 2.11
BRF1-216ENST00000550208 ANKIB1Q9P2G1 1089 aa28.23■■■□□ 2.11
BRF1-216ENST00000550208 LRRC37AA6NMS7 1700 aa28.23■■■□□ 2.11
BRF1-216ENST00000550208 PODXL2Q9NZ53 605 aa28.22■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms