RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CCDC97Q96F63 343 aaPredicted RBP7.77□□□□□ -1.17
VPS29-205ENST00000548539 ATAD2Q6PL18 1390 aa7.76□□□□□ -1.17
VPS29-205ENST00000548539 PALM3A6NDB9 673 aaPredicted RBP7.76□□□□□ -1.17
VPS29-205ENST00000548539 PTCD1O75127 700 aaKnown RBP7.76□□□□□ -1.17
VPS29-205ENST00000548539 DEAF1O75398 565 aaPredicted RBP7.76□□□□□ -1.17
VPS29-205ENST00000548539 MAP3K6O95382 1288 aa7.76□□□□□ -1.17
VPS29-205ENST00000548539 PLAURQ03405 335 aa7.76□□□□□ -1.17
VPS29-205ENST00000548539 STAG2Q8N3U4 1231 aa7.76□□□□□ -1.17
VPS29-205ENST00000548539 CHMP7Q8WUX9 453 aaPredicted RBP7.76□□□□□ -1.17
VPS29-205ENST00000548539 TTC9Q92623 222 aa7.76□□□□□ -1.17
VPS29-205ENST00000548539 C2orf49Q9BVC5 232 aaPredicted RBP7.76□□□□□ -1.17
VPS29-205ENST00000548539 ZBTB42B2RXF5 422 aa7.75□□□□□ -1.17
VPS29-205ENST00000548539 DLL1O00548 723 aa7.75□□□□□ -1.17
VPS29-205ENST00000548539 TAL1P17542 331 aaPredicted RBP7.75□□□□□ -1.17
VPS29-205ENST00000548539 DHX32Q7L7V1 743 aaKnown RBP7.75□□□□□ -1.17
VPS29-205ENST00000548539 PLEKHM2Q8IWE5 1019 aa7.75□□□□□ -1.17
VPS29-205ENST00000548539 OGFOD1Q8N543 542 aa7.75□□□□□ -1.17
VPS29-205ENST00000548539 GAS2L2Q8NHY3 880 aa7.75□□□□□ -1.17
VPS29-205ENST00000548539 TRPM4Q8TD43 1214 aa7.75□□□□□ -1.17
VPS29-205ENST00000548539 USP17L3A6NCW0 530 aa7.74□□□□□ -1.17
VPS29-205ENST00000548539 USP17L4A6NCW7 530 aa7.74□□□□□ -1.17
VPS29-205ENST00000548539 TGFBR3LH3BV60 316 aa7.74□□□□□ -1.17
VPS29-205ENST00000548539 ALX3O95076 343 aa7.74□□□□□ -1.17
VPS29-205ENST00000548539 MLLT1Q03111 559 aaPredicted RBP7.74□□□□□ -1.17
VPS29-205ENST00000548539 USP17L2Q6R6M4 530 aa7.74□□□□□ -1.17
VPS29-205ENST00000548539 USP17L1Q7RTZ2 530 aa7.74□□□□□ -1.17
VPS29-205ENST00000548539 KRT25Q7Z3Z0 450 aa7.74□□□□□ -1.17
VPS29-205ENST00000548539 TMEM130Q8N3G9 435 aa7.74□□□□□ -1.17
VPS29-205ENST00000548539 SCG3Q8WXD2 468 aaKnown RBP7.74□□□□□ -1.17
VPS29-205ENST00000548539 MRPL18Q9H0U6 180 aaKnown RBP7.74□□□□□ -1.17
VPS29-205ENST00000548539 RTN1Q16799 776 aa7.73□□□□□ -1.17
VPS29-205ENST00000548539 GLMNQ92990 594 aa7.73□□□□□ -1.17
VPS29-205ENST00000548539 CALR3Q96L12 384 aaKnown RBP7.73□□□□□ -1.17
VPS29-205ENST00000548539 KRTAP4-7Q9BYR0 210 aa7.73□□□□□ -1.17
VPS29-205ENST00000548539 SMG9Q9H0W8 520 aaKnown RBP7.73□□□□□ -1.17
VPS29-205ENST00000548539 ZFATQ9P243 1243 aa7.73□□□□□ -1.17
VPS29-205ENST00000548539 DMGDHQ9UI17 866 aaKnown RBP7.73□□□□□ -1.17
VPS29-205ENST00000548539 SERPINA10Q9UK55 444 aa7.73□□□□□ -1.17
VPS29-205ENST00000548539 GSC2O15499 205 aa7.72□□□□□ -1.17
VPS29-205ENST00000548539 ARID4AP29374 1257 aaPredicted RBP7.72□□□□□ -1.17
VPS29-205ENST00000548539 GP2P55259 537 aaKnown RBP7.72□□□□□ -1.17
VPS29-205ENST00000548539 GPLD1P80108 840 aa7.72□□□□□ -1.17
VPS29-205ENST00000548539 SIX5Q8N196 739 aa7.72□□□□□ -1.17
VPS29-205ENST00000548539 ZNF594Q96JF6 807 aaPredicted RBP7.72□□□□□ -1.17
VPS29-205ENST00000548539 MKRN1Q9UHC7 482 aaKnown RBP7.72□□□□□ -1.17
VPS29-205ENST00000548539 RNF114Q9Y508 228 aa7.72□□□□□ -1.17
VPS29-205ENST00000548539 OAS3Q9Y6K5 1087 aaKnown RBP7.72□□□□□ -1.17
VPS29-205ENST00000548539 F8W735 103 aaPredicted RBP7.71□□□□□ -1.18
VPS29-205ENST00000548539 RARAP10276 462 aa7.71□□□□□ -1.18
VPS29-205ENST00000548539 TARSP26639 723 aaKnown RBP7.71□□□□□ -1.18
VPS29-205ENST00000548539 HFE2Q6ZVN8 426 aa7.71□□□□□ -1.18
VPS29-205ENST00000548539 BCS1LQ9Y276 419 aa7.71□□□□□ -1.18
VPS29-205ENST00000548539 MED26O95402 600 aa7.7□□□□□ -1.18
VPS29-205ENST00000548539 GRNP28799 593 aaKnown RBP7.7□□□□□ -1.18
VPS29-205ENST00000548539 INPP5BP32019 993 aa7.7□□□□□ -1.18
VPS29-205ENST00000548539 DCAF11Q8TEB1 546 aa7.7□□□□□ -1.18
VPS29-205ENST00000548539 IFT43Q96FT9 208 aa7.7□□□□□ -1.18
VPS29-205ENST00000548539 RAXQ9Y2V3 346 aa7.7□□□□□ -1.18
VPS29-205ENST00000548539 SASH3O75995 380 aa7.69□□□□□ -1.18
VPS29-205ENST00000548539 IGLV1-40P01703 118 aa7.69□□□□□ -1.18
VPS29-205ENST00000548539 EIF2AK2P19525 551 aaKnown RBP7.69□□□□□ -1.18
VPS29-205ENST00000548539 IDH3AP50213 366 aa7.69□□□□□ -1.18
VPS29-205ENST00000548539 HDGFL1Q5TGJ6 251 aa7.69□□□□□ -1.18
VPS29-205ENST00000548539 C11orf16Q9NQ32 467 aa7.69□□□□□ -1.18
VPS29-205ENST00000548539 STOML1Q9UBI4 398 aa7.69□□□□□ -1.18
VPS29-205ENST00000548539 KIAA1324LA8MWY0 1029 aaPredicted RBP7.68□□□□□ -1.18
VPS29-205ENST00000548539 GLB1P16278 677 aa7.68□□□□□ -1.18
VPS29-205ENST00000548539 NRLP54845 237 aa7.68□□□□□ -1.18
VPS29-205ENST00000548539 FZD5Q13467 585 aa7.68□□□□□ -1.18
VPS29-205ENST00000548539 ADAMTS19Q8TE59 1207 aa7.68□□□□□ -1.18
VPS29-205ENST00000548539 SRA1Q9HD15 236 aaKnown RBP7.68□□□□□ -1.18
VPS29-205ENST00000548539 ATP9BO43861 1147 aa7.67□□□□□ -1.18
VPS29-205ENST00000548539 DKK1O94907 266 aa7.67□□□□□ -1.18
VPS29-205ENST00000548539 TGFB1P01137 390 aa7.67□□□□□ -1.18
VPS29-205ENST00000548539 ARSDP51689 593 aa7.67□□□□□ -1.18
VPS29-205ENST00000548539 SEC13P55735 322 aa7.67□□□□□ -1.18
VPS29-205ENST00000548539 LCE1DQ5T752 114 aa7.67□□□□□ -1.18
VPS29-205ENST00000548539 GDF6Q6KF10 455 aaPredicted RBP7.67□□□□□ -1.18
VPS29-205ENST00000548539 MAP4K3Q8IVH8 894 aa7.67□□□□□ -1.18
VPS29-205ENST00000548539 IL22RA1Q8N6P7 574 aa7.67□□□□□ -1.18
VPS29-205ENST00000548539 Q6ZS46 218 aa7.66□□□□□ -1.18
VPS29-205ENST00000548539 AGGF1Q8N302 714 aaeCLIP7.66□□□□□ -1.18
VPS29-205ENST00000548539 PLD4Q96BZ4 506 aa7.66□□□□□ -1.18
VPS29-205ENST00000548539 HINFPQ9BQA5 517 aa7.66□□□□□ -1.18
VPS29-205ENST00000548539 KLK14Q9P0G3 267 aa7.66□□□□□ -1.18
VPS29-205ENST00000548539 RASA1P20936 1047 aa7.65□□□□□ -1.18
VPS29-205ENST00000548539 GRIK1P39086 918 aa7.65□□□□□ -1.18
VPS29-205ENST00000548539 TLR7Q9NYK1 1049 aaKnown RBP7.65□□□□□ -1.18
VPS29-205ENST00000548539 LOC102724428A0A0B4J2F2 783 aa7.64□□□□□ -1.19
VPS29-205ENST00000548539 DHX15O43143 795 aaKnown RBP7.64□□□□□ -1.19
VPS29-205ENST00000548539 SIK1P57059 783 aa7.64□□□□□ -1.19
VPS29-205ENST00000548539 INTS5Q6P9B9 1019 aaKnown RBP7.64□□□□□ -1.19
VPS29-205ENST00000548539 UCN2Q96RP3 112 aa7.64□□□□□ -1.19
VPS29-205ENST00000548539 J3QW42 95 aa7.63□□□□□ -1.19
VPS29-205ENST00000548539 MICAL2O94851 1124 aa7.63□□□□□ -1.19
VPS29-205ENST00000548539 GHRHP01286 108 aa7.63□□□□□ -1.19
VPS29-205ENST00000548539 RFX1P22670 979 aa7.63□□□□□ -1.19
VPS29-205ENST00000548539 DGKZQ13574 1117 aa7.63□□□□□ -1.19
VPS29-205ENST00000548539 SETDB1Q15047 1291 aa7.63□□□□□ -1.19
VPS29-205ENST00000548539 UBL7Q96S82 380 aaPredicted RBP7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms