RNA–Protein interactions for RNA: ENST00000548524.5

USP15-208, Transcript of ubiquitin specific peptidase 15, humanhuman

TSL 2

Gene USP15, Length 648 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP15-208ENST00000548524 TMX4Q9H1E5 349 aaPredicted RBP12.21□□□□□ -0.45
USP15-208ENST00000548524 MYH16Q9H6N6 1097 aa12.21□□□□□ -0.45
USP15-208ENST00000548524 ARFGEF1Q9Y6D6 1849 aa12.21□□□□□ -0.46
USP15-208ENST00000548524 COL11A2P13942 1736 aaPredicted RBP12.2□□□□□ -0.46
USP15-208ENST00000548524 KIF3CO14782 793 aa12.2□□□□□ -0.46
USP15-208ENST00000548524 PPEF1O14829 653 aaPredicted RBP12.2□□□□□ -0.46
USP15-208ENST00000548524 FKBP4Q02790 459 aaKnown RBP eCLIP12.2□□□□□ -0.46
USP15-208ENST00000548524 CC2D2BQ6DHV5 1058 aa12.2□□□□□ -0.46
USP15-208ENST00000548524 OLFM4Q6UX06 510 aa12.2□□□□□ -0.46
USP15-208ENST00000548524 C16orf71Q8IYS4 520 aaPredicted RBP12.2□□□□□ -0.46
USP15-208ENST00000548524 SYNE4Q8N205 404 aa12.2□□□□□ -0.46
USP15-208ENST00000548524 FAM89AQ96GI7 184 aa12.2□□□□□ -0.46
USP15-208ENST00000548524 CRAMP1Q96RY5 1269 aa12.2□□□□□ -0.46
USP15-208ENST00000548524 NMRK2Q9NPI5 230 aa12.2□□□□□ -0.46
USP15-208ENST00000548524 DLEC1Q9Y238 1755 aa12.2□□□□□ -0.46
USP15-208ENST00000548524 RIOK3O14730 519 aaKnown RBP12.19□□□□□ -0.46
USP15-208ENST00000548524 EXOSC9Q06265 439 aaKnown RBP12.19□□□□□ -0.46
USP15-208ENST00000548524 TRIM28Q13263 835 aaKnown RBP12.19□□□□□ -0.46
USP15-208ENST00000548524 RTL5Q5HYW3 569 aaPredicted RBP12.19□□□□□ -0.46
USP15-208ENST00000548524 DPY19L2Q6NUT2 758 aa12.19□□□□□ -0.46
USP15-208ENST00000548524 DDX46Q7L014 1031 aaKnown RBP12.19□□□□□ -0.46
USP15-208ENST00000548524 PCDHB13Q9Y5F0 798 aa12.19□□□□□ -0.46
USP15-208ENST00000548524 GLTPD2A6NH11 291 aa12.18□□□□□ -0.46
USP15-208ENST00000548524 METTL22Q9BUU2 404 aaPredicted RBP12.18□□□□□ -0.46
USP15-208ENST00000548524 RRAGCQ9HB90 399 aa12.18□□□□□ -0.46
USP15-208ENST00000548524 ZNF277Q9NRM2 450 aaPredicted RBP12.18□□□□□ -0.46
USP15-208ENST00000548524 MAP3K2Q9Y2U5 619 aa12.18□□□□□ -0.46
USP15-208ENST00000548524 ABCC4O15439 1325 aa12.17□□□□□ -0.46
USP15-208ENST00000548524 NUP98P52948 1817 aa12.17□□□□□ -0.46
USP15-208ENST00000548524 PI4KAP2A4QPH2 592 aa12.17□□□□□ -0.46
USP15-208ENST00000548524 CCER2I3L3R5 266 aa12.17□□□□□ -0.46
USP15-208ENST00000548524 IRS4O14654 1257 aaPredicted RBP12.17□□□□□ -0.46
USP15-208ENST00000548524 HSP90B1P14625 803 aaKnown RBP12.17□□□□□ -0.46
USP15-208ENST00000548524 NEXNQ0ZGT2 675 aa12.17□□□□□ -0.46
USP15-208ENST00000548524 GRIPAP1Q4V328 841 aa12.17□□□□□ -0.46
USP15-208ENST00000548524 KSR2Q6VAB6 950 aa12.17□□□□□ -0.46
USP15-208ENST00000548524 PI4KAP1Q8N8J0 262 aa12.17□□□□□ -0.46
USP15-208ENST00000548524 ZBTB38Q8NAP3 1195 aaPredicted RBP12.17□□□□□ -0.46
USP15-208ENST00000548524 CCDC191Q8NCU4 936 aa12.17□□□□□ -0.46
USP15-208ENST00000548524 CWC25Q9NXE8 425 aaPredicted RBP12.17□□□□□ -0.46
USP15-208ENST00000548524 PCDHB8Q9UN66 801 aa12.17□□□□□ -0.46
USP15-208ENST00000548524 TNRC6CQ9HCJ0 1690 aaKnown RBP12.16□□□□□ -0.46
USP15-208ENST00000548524 VAMP4O75379 141 aa12.16□□□□□ -0.46
USP15-208ENST00000548524 BBOX1O75936 387 aa12.16□□□□□ -0.46
USP15-208ENST00000548524 GRAPQ13588 217 aa12.16□□□□□ -0.46
USP15-208ENST00000548524 G2E3Q7L622 706 aa12.16□□□□□ -0.46
USP15-208ENST00000548524 GRAPLQ8TC17 118 aaPredicted RBP12.16□□□□□ -0.46
USP15-208ENST00000548524 PSMD1Q99460 953 aa12.16□□□□□ -0.46
USP15-208ENST00000548524 ATP6V0A2Q9Y487 856 aa12.16□□□□□ -0.46
USP15-208ENST00000548524 SLX4Q8IY92 1834 aa12.16□□□□□ -0.46
USP15-208ENST00000548524 TOMM70O94826 608 aa12.15□□□□□ -0.46
USP15-208ENST00000548524 VEGFAP15692 232 aaPredicted RBP12.15□□□□□ -0.46
USP15-208ENST00000548524 IARSP41252 1262 aaKnown RBP12.15□□□□□ -0.46
USP15-208ENST00000548524 FLIIQ13045 1269 aa12.15□□□□□ -0.46
USP15-208ENST00000548524 FKBP5Q13451 457 aaPredicted RBP12.15□□□□□ -0.46
USP15-208ENST00000548524 ZNF467Q7Z7K2 595 aaPredicted RBP12.15□□□□□ -0.46
USP15-208ENST00000548524 PCCAP05165 728 aaPredicted RBP12.14□□□□□ -0.47
USP15-208ENST00000548524 SF3B3Q15393 1217 aaKnown RBP12.14□□□□□ -0.47
USP15-208ENST00000548524 IFNL1Q8IU54 200 aa12.14□□□□□ -0.47
USP15-208ENST00000548524 SP8Q8IXZ3 490 aa12.14□□□□□ -0.47
USP15-208ENST00000548524 JDP2Q8WYK2 163 aa12.14□□□□□ -0.47
USP15-208ENST00000548524 JARID2Q92833 1246 aaPredicted RBP12.14□□□□□ -0.47
USP15-208ENST00000548524 ZNF521Q96K83 1311 aa12.13□□□□□ -0.47
USP15-208ENST00000548524 E9PSI1 815 aa12.13□□□□□ -0.47
USP15-208ENST00000548524 DDNO94850 711 aaPredicted RBP12.13□□□□□ -0.47
USP15-208ENST00000548524 IGKV5-2P06315 115 aa12.13□□□□□ -0.47
USP15-208ENST00000548524 DPP8Q6V1X1 898 aaPredicted RBP12.13□□□□□ -0.47
USP15-208ENST00000548524 TMC4Q7Z404 712 aa12.13□□□□□ -0.47
USP15-208ENST00000548524 SLC51AQ86UW1 340 aa12.13□□□□□ -0.47
USP15-208ENST00000548524 LARGE2Q8N3Y3 721 aa12.13□□□□□ -0.47
USP15-208ENST00000548524 SUPT20HQ8NEM7 779 aa12.13□□□□□ -0.47
USP15-208ENST00000548524 RBM46Q8TBY0 533 aaKnown RBP12.13□□□□□ -0.47
USP15-208ENST00000548524 NEURL1BA8MQ27 555 aa12.12□□□□□ -0.47
USP15-208ENST00000548524 PPIP5K2O43314 1243 aa12.12□□□□□ -0.47
USP15-208ENST00000548524 PDE8AO60658 829 aa12.12□□□□□ -0.47
USP15-208ENST00000548524 EIF6P56537 245 aaKnown RBP12.12□□□□□ -0.47
USP15-208ENST00000548524 CWF19L2Q2TBE0 894 aaKnown RBP12.12□□□□□ -0.47
USP15-208ENST00000548524 CCDC152Q4G0S7 254 aa12.12□□□□□ -0.47
USP15-208ENST00000548524 DIEXFQ68CQ4 756 aaKnown RBP12.12□□□□□ -0.47
USP15-208ENST00000548524 MPNDQ8N594 471 aa12.12□□□□□ -0.47
USP15-208ENST00000548524 DNAAF4Q8WXU2 420 aa12.12□□□□□ -0.47
USP15-208ENST00000548524 HSPA6P17066 643 aa12.11□□□□□ -0.47
USP15-208ENST00000548524 NIM1KQ8IY84 436 aa12.11□□□□□ -0.47
USP15-208ENST00000548524 CELF1Q92879 486 aaKnown RBP12.11□□□□□ -0.47
USP15-208ENST00000548524 MS4A3Q96HJ5 214 aa12.11□□□□□ -0.47
USP15-208ENST00000548524 CCDC85AQ96PX6 553 aaPredicted RBP12.11□□□□□ -0.47
USP15-208ENST00000548524 SNED1Q8TER0 1413 aa12.11□□□□□ -0.47
USP15-208ENST00000548524 CDHR2Q9BYE9 1310 aa12.11□□□□□ -0.47
USP15-208ENST00000548524 ZNF541Q9H0D2 1346 aa12.11□□□□□ -0.47
USP15-208ENST00000548524 ANKRD36CQ5JPF3 1778 aa12.1□□□□□ -0.47
USP15-208ENST00000548524 ARFGEF2Q9Y6D5 1785 aa12.1□□□□□ -0.47
USP15-208ENST00000548524 IQCA1LA6NCM1 817 aa12.1□□□□□ -0.47
USP15-208ENST00000548524 FZD9O00144 591 aa12.1□□□□□ -0.47
USP15-208ENST00000548524 RPS8P62241 208 aaKnown RBP12.1□□□□□ -0.47
USP15-208ENST00000548524 FSTL1Q12841 308 aa12.1□□□□□ -0.47
USP15-208ENST00000548524 AOC3Q16853 763 aa12.1□□□□□ -0.47
USP15-208ENST00000548524 SMC1BQ8NDV3 1235 aa12.1□□□□□ -0.47
USP15-208ENST00000548524 VPS33BQ9H267 617 aa12.1□□□□□ -0.47
USP15-208ENST00000548524 TAOK2Q9UL54 1235 aa12.1□□□□□ -0.47
USP15-208ENST00000548524 FER1L6Q2WGJ9 1857 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms