RNA–Protein interactions for RNA: ENST00000548434.1

RAPGEF3-217, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 5

Gene RAPGEF3, Length 695 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-217ENST00000548434 EPS15P42566 896 aa20.79■□□□□ 0.92
RAPGEF3-217ENST00000548434 EIF6P56537 245 aaKnown RBP20.79■□□□□ 0.92
RAPGEF3-217ENST00000548434 CXCL9Q07325 125 aa20.79■□□□□ 0.92
RAPGEF3-217ENST00000548434 KIAA2012Q0VF49 1180 aa20.79■□□□□ 0.92
RAPGEF3-217ENST00000548434 DDX46Q7L014 1031 aaKnown RBP20.79■□□□□ 0.92
RAPGEF3-217ENST00000548434 PPIP5K2O43314 1243 aa20.78■□□□□ 0.92
RAPGEF3-217ENST00000548434 PNMA8AQ86V59 439 aaPredicted RBP20.78■□□□□ 0.92
RAPGEF3-217ENST00000548434 MPNDQ8N594 471 aa20.78■□□□□ 0.92
RAPGEF3-217ENST00000548434 ZNRF3Q9ULT6 936 aa20.78■□□□□ 0.92
RAPGEF3-217ENST00000548434 YDJCA8MPS7 323 aa20.77■□□□□ 0.92
RAPGEF3-217ENST00000548434 TMC4Q7Z404 712 aa20.77■□□□□ 0.92
RAPGEF3-217ENST00000548434 ZBTB38Q8NAP3 1195 aaPredicted RBP20.77■□□□□ 0.92
RAPGEF3-217ENST00000548434 CACNA1FO60840 1977 aa20.77■□□□□ 0.92
RAPGEF3-217ENST00000548434 IRS4O14654 1257 aaPredicted RBP20.76■□□□□ 0.91
RAPGEF3-217ENST00000548434 EAPPQ56P03 285 aaPredicted RBP20.76■□□□□ 0.91
RAPGEF3-217ENST00000548434 MAP1SQ66K74 1059 aaPredicted RBP20.76■□□□□ 0.91
RAPGEF3-217ENST00000548434 DPP8Q6V1X1 898 aaPredicted RBP20.76■□□□□ 0.91
RAPGEF3-217ENST00000548434 NIM1KQ8IY84 436 aa20.76■□□□□ 0.91
RAPGEF3-217ENST00000548434 CNTROBQ8N137 903 aa20.76■□□□□ 0.91
RAPGEF3-217ENST00000548434 SUPT20HQ8NEM7 779 aa20.76■□□□□ 0.91
RAPGEF3-217ENST00000548434 TSR2Q969E8 191 aaKnown RBP20.76■□□□□ 0.91
RAPGEF3-217ENST00000548434 METTL22Q9BUU2 404 aaPredicted RBP20.76■□□□□ 0.91
RAPGEF3-217ENST00000548434 GJA3Q9Y6H8 435 aa20.76■□□□□ 0.91
RAPGEF3-217ENST00000548434 CNTNAP1P78357 1384 aa20.75■□□□□ 0.91
RAPGEF3-217ENST00000548434 ZEB1P37275 1124 aaPredicted RBP20.75■□□□□ 0.91
RAPGEF3-217ENST00000548434 RIC3Q7Z5B4 369 aa20.75■□□□□ 0.91
RAPGEF3-217ENST00000548434 CCDC191Q8NCU4 936 aa20.75■□□□□ 0.91
RAPGEF3-217ENST00000548434 TRPM7Q96QT4 1865 aa20.75■□□□□ 0.91
RAPGEF3-217ENST00000548434 IL16Q14005 1332 aa20.75■□□□□ 0.91
RAPGEF3-217ENST00000548434 SCN9AQ15858 1988 aa20.74■□□□□ 0.91
RAPGEF3-217ENST00000548434 PCCAP05165 728 aaPredicted RBP20.74■□□□□ 0.91
RAPGEF3-217ENST00000548434 IGKV5-2P06315 115 aa20.74■□□□□ 0.91
RAPGEF3-217ENST00000548434 RTL5Q5HYW3 569 aaPredicted RBP20.74■□□□□ 0.91
RAPGEF3-217ENST00000548434 COL13A1Q5TAT6 717 aaPredicted RBP20.74■□□□□ 0.91
RAPGEF3-217ENST00000548434 CCDC30Q5VVM6 783 aa20.74■□□□□ 0.91
RAPGEF3-217ENST00000548434 GPRC5DQ9NZD1 345 aa20.74■□□□□ 0.91
RAPGEF3-217ENST00000548434 POLLQ9UGP5 575 aa20.74■□□□□ 0.91
RAPGEF3-217ENST00000548434 ZNF316A6NFI3 1004 aaPredicted RBP20.73■□□□□ 0.91
RAPGEF3-217ENST00000548434 GOLGA2Q08379 1002 aa20.73■□□□□ 0.91
RAPGEF3-217ENST00000548434 MYD88Q99836 296 aa20.73■□□□□ 0.91
RAPGEF3-217ENST00000548434 PGAP2Q9UHJ9 254 aa20.73■□□□□ 0.91
RAPGEF3-217ENST00000548434 TMEM88BA6NKF7 163 aa20.72■□□□□ 0.91
RAPGEF3-217ENST00000548434 RPS8P62241 208 aaKnown RBP20.72■□□□□ 0.91
RAPGEF3-217ENST00000548434 GPSM2P81274 684 aa20.72■□□□□ 0.91
RAPGEF3-217ENST00000548434 FMR1Q06787 632 aaKnown RBP eCLIP20.72■□□□□ 0.91
RAPGEF3-217ENST00000548434 USP50Q70EL3 339 aaPredicted RBP20.72■□□□□ 0.91
RAPGEF3-217ENST00000548434 G2E3Q7L622 706 aa20.72■□□□□ 0.91
RAPGEF3-217ENST00000548434 SEC31BQ9NQW1 1179 aa20.72■□□□□ 0.91
RAPGEF3-217ENST00000548434 MYH3P11055 1940 aa20.71■□□□□ 0.91
RAPGEF3-217ENST00000548434 HIRAP54198 1017 aaPredicted RBP20.71■□□□□ 0.91
RAPGEF3-217ENST00000548434 PODXL2Q9NZ53 605 aa20.71■□□□□ 0.91
RAPGEF3-217ENST00000548434 MKRN1Q9UHC7 482 aaKnown RBP20.71■□□□□ 0.91
RAPGEF3-217ENST00000548434 CLEC11AQ9Y240 323 aa20.71■□□□□ 0.91
RAPGEF3-217ENST00000548434 POLR2AP24928 1970 aaKnown RBP20.71■□□□□ 0.91
RAPGEF3-217ENST00000548434 HSPA1AP0DMV8 641 aaKnown RBP20.7■□□□□ 0.9
RAPGEF3-217ENST00000548434 HSPA1BP0DMV9 641 aaKnown RBP20.7■□□□□ 0.9
RAPGEF3-217ENST00000548434 GMPSP49915 693 aaPredicted RBP20.7■□□□□ 0.9
RAPGEF3-217ENST00000548434 KSR2Q6VAB6 950 aa20.7■□□□□ 0.9
RAPGEF3-217ENST00000548434 JARID2Q92833 1246 aaPredicted RBP20.7■□□□□ 0.9
RAPGEF3-217ENST00000548434 MAP3K2Q9Y2U5 619 aa20.7■□□□□ 0.9
RAPGEF3-217ENST00000548434 PI4KAP2A4QPH2 592 aa20.69■□□□□ 0.9
RAPGEF3-217ENST00000548434 RASSF10A6NK89 507 aa20.69■□□□□ 0.9
RAPGEF3-217ENST00000548434 CST9Q5W186 159 aa20.69■□□□□ 0.9
RAPGEF3-217ENST00000548434 CIAPIN1Q6FI81 312 aa20.69■□□□□ 0.9
RAPGEF3-217ENST00000548434 PI4KAP1Q8N8J0 262 aa20.69■□□□□ 0.9
RAPGEF3-217ENST00000548434 TMX4Q9H1E5 349 aaPredicted RBP20.69■□□□□ 0.9
RAPGEF3-217ENST00000548434 ADARB2Q9NS39 739 aaKnown RBP20.69■□□□□ 0.9
RAPGEF3-217ENST00000548434 CWC25Q9NXE8 425 aaPredicted RBP20.69■□□□□ 0.9
RAPGEF3-217ENST00000548434 CDHR2Q9BYE9 1310 aa20.69■□□□□ 0.9
RAPGEF3-217ENST00000548434 SHTN1A0MZ66 631 aa20.68■□□□□ 0.9
RAPGEF3-217ENST00000548434 PDE8AO60658 829 aa20.68■□□□□ 0.9
RAPGEF3-217ENST00000548434 RAD17O75943 681 aa20.68■□□□□ 0.9
RAPGEF3-217ENST00000548434 VEGFBP49765 207 aa20.68■□□□□ 0.9
RAPGEF3-217ENST00000548434 TWISTNBQ3B726 338 aaPredicted RBP20.68■□□□□ 0.9
RAPGEF3-217ENST00000548434 TBC1D16Q8TBP0 767 aa20.68■□□□□ 0.9
RAPGEF3-217ENST00000548434 CHMP4AQ9BY43 222 aa20.68■□□□□ 0.9
RAPGEF3-217ENST00000548434 SPINK5Q9NQ38 1064 aaPredicted RBP20.68■□□□□ 0.9
RAPGEF3-217ENST00000548434 KCNQ5Q9NR82 932 aa20.68■□□□□ 0.9
RAPGEF3-217ENST00000548434 PSME4Q14997 1843 aa20.68■□□□□ 0.9
RAPGEF3-217ENST00000548434 VAMP4O75379 141 aa20.67■□□□□ 0.9
RAPGEF3-217ENST00000548434 LMOD1P29536 600 aaPredicted RBP20.67■□□□□ 0.9
RAPGEF3-217ENST00000548434 WASHC4Q2M389 1173 aa20.67■□□□□ 0.9
RAPGEF3-217ENST00000548434 MRS2Q9HD23 443 aa20.67■□□□□ 0.9
RAPGEF3-217ENST00000548434 NSFL1CQ9UNZ2 370 aaKnown RBP20.67■□□□□ 0.9
RAPGEF3-217ENST00000548434 H7C1W4 665 aa20.66■□□□□ 0.9
RAPGEF3-217ENST00000548434 CASP7P55210 303 aa20.66■□□□□ 0.9
RAPGEF3-217ENST00000548434 WDR63Q8IWG1 891 aa20.66■□□□□ 0.9
RAPGEF3-217ENST00000548434 RTL9Q8NET4 1388 aa20.66■□□□□ 0.9
RAPGEF3-217ENST00000548434 ZNF646O15015 1829 aaPredicted RBP20.65■□□□□ 0.9
RAPGEF3-217ENST00000548434 FANCIQ9NVI1 1328 aa20.65■□□□□ 0.9
RAPGEF3-217ENST00000548434 NEURL1BA8MQ27 555 aa20.65■□□□□ 0.9
RAPGEF3-217ENST00000548434 TRAF5O00463 557 aa20.65■□□□□ 0.9
RAPGEF3-217ENST00000548434 DDX58O95786 925 aaKnown RBP20.65■□□□□ 0.9
RAPGEF3-217ENST00000548434 TNIP1Q15025 636 aa20.65■□□□□ 0.9
RAPGEF3-217ENST00000548434 TTLL11Q8NHH1 800 aa20.65■□□□□ 0.9
RAPGEF3-217ENST00000548434 TRPM4Q8TD43 1214 aa20.65■□□□□ 0.9
RAPGEF3-217ENST00000548434 GPR101Q96P66 508 aaPredicted RBP20.65■□□□□ 0.9
RAPGEF3-217ENST00000548434 PSMD14O00487 310 aa20.64■□□□□ 0.89
RAPGEF3-217ENST00000548434 SLC4A2P04920 1241 aa20.64■□□□□ 0.89
RAPGEF3-217ENST00000548434 CWF19L2Q2TBE0 894 aaKnown RBP20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms