RNA–Protein interactions for RNA: ENST00000548421.2

BRF1-213, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 1 (best) BASIC

Gene BRF1, Length 1,452 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-213ENST00000548421 PARP3Q9Y6F1 533 aa35.77■■■■□ 3.32
BRF1-213ENST00000548421 RIC1Q4ADV7 1423 aa35.76■■■■□ 3.32
BRF1-213ENST00000548421 ST5P78524 1137 aa35.76■■■■□ 3.32
BRF1-213ENST00000548421 TNRC6CQ9HCJ0 1690 aaKnown RBP35.75■■■■□ 3.31
BRF1-213ENST00000548421 R3HDM1Q15032 1099 aaKnown RBP35.74■■■■□ 3.31
BRF1-213ENST00000548421 FAM161AQ3B820 660 aa35.73■■■■□ 3.31
BRF1-213ENST00000548421 RFX5P48382 616 aaPredicted RBP35.73■■■■□ 3.31
BRF1-213ENST00000548421 CCDC57Q2TAC2 916 aa35.73■■■■□ 3.31
BRF1-213ENST00000548421 CCDC24Q8N4L8 307 aa35.73■■■■□ 3.31
BRF1-213ENST00000548421 CCDC85AQ96PX6 553 aaPredicted RBP35.73■■■■□ 3.31
BRF1-213ENST00000548421 CCDC152Q4G0S7 254 aa35.72■■■■□ 3.31
BRF1-213ENST00000548421 NLRP3Q96P20 1036 aa35.72■■■■□ 3.31
BRF1-213ENST00000548421 GREM2Q9H772 168 aa35.72■■■■□ 3.31
BRF1-213ENST00000548421 RTL9Q8NET4 1388 aa35.71■■■■□ 3.31
BRF1-213ENST00000548421 EXOC6BQ9Y2D4 811 aa35.71■■■■□ 3.31
BRF1-213ENST00000548421 SURF6O75683 361 aaKnown RBP35.7■■■■□ 3.31
BRF1-213ENST00000548421 IFIT5Q13325 482 aaKnown RBP35.7■■■■□ 3.31
BRF1-213ENST00000548421 SF3B3Q15393 1217 aaKnown RBP35.7■■■■□ 3.31
BRF1-213ENST00000548421 COPRSQ9NQ92 184 aa35.7■■■■□ 3.31
BRF1-213ENST00000548421 NOP58Q9Y2X3 529 aaKnown RBP35.7■■■■□ 3.31
BRF1-213ENST00000548421 PTPN12Q05209 780 aaKnown RBP35.69■■■■□ 3.3
BRF1-213ENST00000548421 PA2G4Q9UQ80 394 aaKnown RBP35.69■■■■□ 3.3
BRF1-213ENST00000548421 ITGA6P23229 1130 aa35.68■■■■□ 3.3
BRF1-213ENST00000548421 HSP90AB4PQ58FF6 505 aa35.68■■■■□ 3.3
BRF1-213ENST00000548421 C3orf67Q6ZVT6 689 aa35.68■■■■□ 3.3
BRF1-213ENST00000548421 ANKRD31Q8N7Z5 1873 aa35.68■■■■□ 3.3
BRF1-213ENST00000548421 ANKRD18BA2A2Z9 1011 aa35.67■■■■□ 3.3
BRF1-213ENST00000548421 KLHDC4Q8TBB5 520 aa35.67■■■■□ 3.3
BRF1-213ENST00000548421 RAB11FIP3O75154 756 aa35.65■■■■□ 3.3
BRF1-213ENST00000548421 TAF7LQ5H9L4 462 aa35.64■■■■□ 3.3
BRF1-213ENST00000548421 MTFR1LQ9H019 292 aa35.64■■■■□ 3.3
BRF1-213ENST00000548421 PSDA5PKW4 1024 aaPredicted RBP35.63■■■■□ 3.29
BRF1-213ENST00000548421 NUCB1Q02818 461 aa35.63■■■■□ 3.29
BRF1-213ENST00000548421 G3BP1Q13283 466 aaKnown RBP eCLIP35.63■■■■□ 3.29
BRF1-213ENST00000548421 OS9Q13438 667 aaPredicted RBP35.63■■■■□ 3.29
BRF1-213ENST00000548421 SIL1Q9H173 461 aa35.63■■■■□ 3.29
BRF1-213ENST00000548421 ZBTB7AO95365 584 aa35.62■■■■□ 3.29
BRF1-213ENST00000548421 ANKRD45Q5TZF3 282 aa35.62■■■■□ 3.29
BRF1-213ENST00000548421 ZNF594Q96JF6 807 aaPredicted RBP35.62■■■■□ 3.29
BRF1-213ENST00000548421 PDZRN3Q9UPQ7 1066 aa35.62■■■■□ 3.29
BRF1-213ENST00000548421 LRP5O75197 1615 aa35.62■■■■□ 3.29
BRF1-213ENST00000548421 APBB1O00213 710 aa35.61■■■■□ 3.29
BRF1-213ENST00000548421 BRIP1Q9BX63 1249 aa35.61■■■■□ 3.29
BRF1-213ENST00000548421 SPEF2Q9C093 1822 aa35.61■■■■□ 3.29
BRF1-213ENST00000548421 ERC1Q8IUD2 1116 aa35.6■■■■□ 3.29
BRF1-213ENST00000548421 LRRCC1Q9C099 1032 aa35.6■■■■□ 3.29
BRF1-213ENST00000548421 SEC31BQ9NQW1 1179 aa35.6■■■■□ 3.29
BRF1-213ENST00000548421 ZBTB47Q9UFB7 747 aaPredicted RBP35.6■■■■□ 3.29
BRF1-213ENST00000548421 FBXO3Q9UK99 471 aa35.6■■■■□ 3.29
BRF1-213ENST00000548421 CRY2Q49AN0 593 aa35.59■■■■□ 3.29
BRF1-213ENST00000548421 CHD1LQ86WJ1 897 aa35.59■■■■□ 3.29
BRF1-213ENST00000548421 CDC5LQ99459 802 aaKnown RBP35.59■■■■□ 3.29
BRF1-213ENST00000548421 TAF1P21675 1872 aa35.59■■■■□ 3.29
BRF1-213ENST00000548421 KLRG2A4D1S0 409 aaPredicted RBP35.58■■■■□ 3.29
BRF1-213ENST00000548421 KIF1BPQ96EK5 621 aa35.58■■■■□ 3.29
BRF1-213ENST00000548421 EYA2O00167 538 aa35.57■■■■□ 3.28
BRF1-213ENST00000548421 CIAO1O76071 339 aa35.57■■■■□ 3.28
BRF1-213ENST00000548421 RHPN1Q8TCX5 695 aa35.56■■■■□ 3.28
BRF1-213ENST00000548421 PDE6BP35913 854 aa35.55■■■■□ 3.28
BRF1-213ENST00000548421 DDX46Q7L014 1031 aaKnown RBP35.55■■■■□ 3.28
BRF1-213ENST00000548421 LNPKQ9C0E8 428 aa35.55■■■■□ 3.28
BRF1-213ENST00000548421 ATF5Q9Y2D1 282 aaPredicted RBP35.55■■■■□ 3.28
BRF1-213ENST00000548421 POLD1P28340 1107 aa35.54■■■■□ 3.28
BRF1-213ENST00000548421 IL15P40933 162 aaPredicted RBP35.54■■■■□ 3.28
BRF1-213ENST00000548421 LDHAL6AQ6ZMR3 332 aa35.54■■■■□ 3.28
BRF1-213ENST00000548421 RPGRQ92834 1020 aaKnown RBP35.54■■■■□ 3.28
BRF1-213ENST00000548421 COL4A1P02462 1669 aa35.54■■■■□ 3.28
BRF1-213ENST00000548421 COL11A2P13942 1736 aaPredicted RBP35.54■■■■□ 3.28
BRF1-213ENST00000548421 IGHMBP2P38935 993 aaKnown RBP35.54■■■■□ 3.28
BRF1-213ENST00000548421 LRRC24Q50LG9 513 aa35.54■■■■□ 3.28
BRF1-213ENST00000548421 ATG9AQ7Z3C6 839 aa35.54■■■■□ 3.28
BRF1-213ENST00000548421 SMARCA5O60264 1052 aaPredicted RBP35.53■■■■□ 3.28
BRF1-213ENST00000548421 SASH1O94885 1247 aa35.53■■■■□ 3.28
BRF1-213ENST00000548421 PUS3Q9BZE2 481 aaKnown RBP35.53■■■■□ 3.28
BRF1-213ENST00000548421 C10orf71Q711Q0 1435 aa35.52■■■■□ 3.28
BRF1-213ENST00000548421 ANKRD18AQ8IVF6 992 aa35.52■■■■□ 3.28
BRF1-213ENST00000548421 MPHOSPH8Q99549 860 aa35.52■■■■□ 3.28
BRF1-213ENST00000548421 CNNM1Q9NRU3 951 aa35.52■■■■□ 3.28
BRF1-213ENST00000548421 KIF13BQ9NQT8 1826 aa35.5■■■■□ 3.27
BRF1-213ENST00000548421 RBM17Q96I25 401 aaKnown RBP35.5■■■■□ 3.27
BRF1-213ENST00000548421 CELF1Q92879 486 aaKnown RBP35.49■■■■□ 3.27
BRF1-213ENST00000548421 RIPOR2Q9Y4F9 1068 aa35.49■■■■□ 3.27
BRF1-213ENST00000548421 HOXA10P31260 410 aaPredicted RBP35.48■■■■□ 3.27
BRF1-213ENST00000548421 IL1RAPL2Q9NP60 686 aa35.48■■■■□ 3.27
BRF1-213ENST00000548421 RPS8P62241 208 aaKnown RBP35.48■■■■□ 3.27
BRF1-213ENST00000548421 GRAPQ13588 217 aa35.48■■■■□ 3.27
BRF1-213ENST00000548421 SKAP1Q86WV1 359 aa35.48■■■■□ 3.27
BRF1-213ENST00000548421 GRAPLQ8TC17 118 aaPredicted RBP35.48■■■■□ 3.27
BRF1-213ENST00000548421 TFCP2Q12800 502 aa35.47■■■■□ 3.27
BRF1-213ENST00000548421 SRGNP10124 158 aa35.46■■■■□ 3.27
BRF1-213ENST00000548421 PDE4AP27815 886 aa35.46■■■■□ 3.27
BRF1-213ENST00000548421 CLASRPQ8N2M8 674 aaKnown RBP35.46■■■■□ 3.27
BRF1-213ENST00000548421 BCL11AQ9H165 835 aa35.46■■■■□ 3.27
BRF1-213ENST00000548421 BSDC1Q9NW68 430 aaPredicted RBP35.46■■■■□ 3.27
BRF1-213ENST00000548421 MROH5Q6ZUA9 1318 aa35.45■■■■□ 3.27
BRF1-213ENST00000548421 NPR1P16066 1061 aa35.45■■■■□ 3.27
BRF1-213ENST00000548421 CRAMP1Q96RY5 1269 aa35.45■■■■□ 3.27
BRF1-213ENST00000548421 SGIP1Q9BQI5 828 aa35.45■■■■□ 3.27
BRF1-213ENST00000548421 A0A1B0GUL6 1792 aa35.45■■■■□ 3.27
BRF1-213ENST00000548421 CEP126Q9P2H0 1117 aa35.44■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms