RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 GRAPQ13588 217 aa15.15■□□□□ 0.02
YBX3-217ENST00000546164 TMC4Q7Z404 712 aa15.15■□□□□ 0.02
YBX3-217ENST00000546164 LINS1Q8NG48 757 aa15.15■□□□□ 0.02
YBX3-217ENST00000546164 GRAPLQ8TC17 118 aaPredicted RBP15.15■□□□□ 0.02
YBX3-217ENST00000546164 ATP6V0A2Q9Y487 856 aa15.15■□□□□ 0.02
YBX3-217ENST00000546164 LAMB2P55268 1798 aa15.14■□□□□ 0.01
YBX3-217ENST00000546164 CT47B1P0C2W7 299 aaPredicted RBP15.14■□□□□ 0.01
YBX3-217ENST00000546164 CWF19L2Q2TBE0 894 aaKnown RBP15.14■□□□□ 0.01
YBX3-217ENST00000546164 RTL5Q5HYW3 569 aaPredicted RBP15.14■□□□□ 0.01
YBX3-217ENST00000546164 ZNF526Q8TF50 670 aaPredicted RBP15.14■□□□□ 0.01
YBX3-217ENST00000546164 KDM2BQ8NHM5 1336 aa15.14■□□□□ 0.01
YBX3-217ENST00000546164 H7C1W4 665 aa15.13■□□□□ 0.01
YBX3-217ENST00000546164 PDE8AO60658 829 aa15.13■□□□□ 0.01
YBX3-217ENST00000546164 GCKRQ14397 625 aa15.13■□□□□ 0.01
YBX3-217ENST00000546164 SP8Q8IXZ3 490 aa15.13■□□□□ 0.01
YBX3-217ENST00000546164 U3KPZ7 1027 aaPredicted RBP15.13■□□□□ 0.01
YBX3-217ENST00000546164 GLTPD2A6NH11 291 aa15.12■□□□□ 0.01
YBX3-217ENST00000546164 ALDH1L2Q3SY69 923 aa15.12■□□□□ 0.01
YBX3-217ENST00000546164 BEND3Q5T5X7 828 aa15.12■□□□□ 0.01
YBX3-217ENST00000546164 MRPL50Q8N5N7 158 aaKnown RBP15.12■□□□□ 0.01
YBX3-217ENST00000546164 TMX4Q9H1E5 349 aaPredicted RBP15.12■□□□□ 0.01
YBX3-217ENST00000546164 ZNF277Q9NRM2 450 aaPredicted RBP15.12■□□□□ 0.01
YBX3-217ENST00000546164 DICER1Q9UPY3 1922 aaKnown RBP15.11■□□□□ 0.01
YBX3-217ENST00000546164 F6X3S4 739 aa15.11■□□□□ 0.01
YBX3-217ENST00000546164 KIF3CO14782 793 aa15.11■□□□□ 0.01
YBX3-217ENST00000546164 IARSP41252 1262 aaKnown RBP15.11■□□□□ 0.01
YBX3-217ENST00000546164 CCDC152Q4G0S7 254 aa15.11■□□□□ 0.01
YBX3-217ENST00000546164 SSH1Q8WYL5 1049 aa15.11■□□□□ 0.01
YBX3-217ENST00000546164 CELF1Q92879 486 aaKnown RBP15.11■□□□□ 0.01
YBX3-217ENST00000546164 PLA2G12BQ9BX93 195 aa15.11■□□□□ 0.01
YBX3-217ENST00000546164 RTFDC1Q9BY42 306 aaPredicted RBP15.11■□□□□ 0.01
YBX3-217ENST00000546164 TIAM2Q8IVF5 1701 aa15.11■□□□□ 0.01
YBX3-217ENST00000546164 CASP7P55210 303 aa15.1■□□□□ 0.01
YBX3-217ENST00000546164 CTSWP56202 376 aa15.1■□□□□ 0.01
YBX3-217ENST00000546164 SLC51AQ86UW1 340 aa15.1■□□□□ 0.01
YBX3-217ENST00000546164 JARID2Q92833 1246 aaPredicted RBP15.1■□□□□ 0.01
YBX3-217ENST00000546164 VPS33BQ9H267 617 aa15.1■□□□□ 0.01
YBX3-217ENST00000546164 NMRK2Q9NPI5 230 aa15.1■□□□□ 0.01
YBX3-217ENST00000546164 PTPRCP08575 1304 aa15.1■□□□□ 0.01
YBX3-217ENST00000546164 RTL9Q8NET4 1388 aa15.1■□□□□ 0.01
YBX3-217ENST00000546164 C1QTNF8P60827 252 aa15.09■□□□□ 0.01
YBX3-217ENST00000546164 RPS8P62241 208 aaKnown RBP15.09■□□□□ 0.01
YBX3-217ENST00000546164 DPY19L2Q6NUT2 758 aa15.09■□□□□ 0.01
YBX3-217ENST00000546164 UBE3BQ7Z3V4 1068 aa15.09■□□□□ 0.01
YBX3-217ENST00000546164 CCDC88AQ3V6T2 1871 aa15.09■□□□□ 0.01
YBX3-217ENST00000546164 LRRC37AA6NMS7 1700 aa15.09■□□□□ 0.01
YBX3-217ENST00000546164 ALDH1L1O75891 902 aa15.08■□□□□ 0
YBX3-217ENST00000546164 BRPF1P55201 1214 aaPredicted RBP15.08■□□□□ 0
YBX3-217ENST00000546164 HNRNPUQ00839 825 aaKnown RBP eCLIP15.08■□□□□ 0
YBX3-217ENST00000546164 MPNDQ8N594 471 aa15.08■□□□□ 0
YBX3-217ENST00000546164 SUPT20HQ8NEM7 779 aa15.08■□□□□ 0
YBX3-217ENST00000546164 TTLL11Q8NHH1 800 aa15.08■□□□□ 0
YBX3-217ENST00000546164 SEC31BQ9NQW1 1179 aa15.08■□□□□ 0
YBX3-217ENST00000546164 FZD9O00144 591 aa15.07■□□□□ 0
YBX3-217ENST00000546164 DPP8Q6V1X1 898 aaPredicted RBP15.07■□□□□ 0
YBX3-217ENST00000546164 COL4A1P02462 1669 aa15.06■□□□□ 0
YBX3-217ENST00000546164 GRM8O00222 908 aa15.06■□□□□ 0
YBX3-217ENST00000546164 CSF1RP07333 972 aa15.06■□□□□ 0
YBX3-217ENST00000546164 JDP2Q8WYK2 163 aa15.06■□□□□ 0
YBX3-217ENST00000546164 SRCIN1Q9C0H9 1055 aa15.06■□□□□ 0
YBX3-217ENST00000546164 SMC4Q9NTJ3 1288 aa15.06■□□□□ 0
YBX3-217ENST00000546164 TOMM70O94826 608 aa15.05■□□□□ -0
YBX3-217ENST00000546164 VEGFAP15692 232 aaPredicted RBP15.05■□□□□ -0
YBX3-217ENST00000546164 LARGE2Q8N3Y3 721 aa15.05■□□□□ -0
YBX3-217ENST00000546164 L3MBTL3Q96JM7 780 aaPredicted RBP15.05■□□□□ -0
YBX3-217ENST00000546164 CDC5LQ99459 802 aaKnown RBP15.05■□□□□ -0
YBX3-217ENST00000546164 BCL2L13Q9BXK5 485 aa15.05■□□□□ -0
YBX3-217ENST00000546164 GREM2Q9H772 168 aa15.05■□□□□ -0
YBX3-217ENST00000546164 RRAGCQ9HB90 399 aa15.05■□□□□ -0
YBX3-217ENST00000546164 PODXL2Q9NZ53 605 aa15.05■□□□□ -0
YBX3-217ENST00000546164 ZBED9Q6R2W3 1325 aa15.05■□□□□ -0
YBX3-217ENST00000546164 DUOX1Q9NRD9 1551 aa15.05■□□□□ -0
YBX3-217ENST00000546164 COL4A5P29400 1685 aa15.05■□□□□ -0
YBX3-217ENST00000546164 TAF1P21675 1872 aa15.05■□□□□ -0
YBX3-217ENST00000546164 WDR90Q96KV7 1748 aa15.04■□□□□ -0
YBX3-217ENST00000546164 ZNF541Q9H0D2 1346 aa15.04■□□□□ -0
YBX3-217ENST00000546164 PPIP5K2O43314 1243 aa15.04■□□□□ -0
YBX3-217ENST00000546164 RARSP54136 660 aaKnown RBP15.04■□□□□ -0
YBX3-217ENST00000546164 KIAA2012Q0VF49 1180 aa15.04■□□□□ -0
YBX3-217ENST00000546164 SLC4A10Q6U841 1118 aa15.04■□□□□ -0
YBX3-217ENST00000546164 ANKRD18AQ8IVF6 992 aa15.04■□□□□ -0
YBX3-217ENST00000546164 CCDC85AQ96PX6 553 aaPredicted RBP15.04■□□□□ -0
YBX3-217ENST00000546164 UTYO14607 1347 aa15.03■□□□□ -0
YBX3-217ENST00000546164 POTECB2RU33 542 aa15.03■□□□□ -0
YBX3-217ENST00000546164 DDNO94850 711 aaPredicted RBP15.03■□□□□ -0
YBX3-217ENST00000546164 AOC3Q16853 763 aa15.03■□□□□ -0
YBX3-217ENST00000546164 RBM46Q8TBY0 533 aaKnown RBP15.03■□□□□ -0
YBX3-217ENST00000546164 C9orf78Q9NZ63 289 aaPredicted RBP15.03■□□□□ -0
YBX3-217ENST00000546164 NSFL1CQ9UNZ2 370 aaKnown RBP15.03■□□□□ -0
YBX3-217ENST00000546164 MYH3P11055 1940 aa15.02■□□□□ -0
YBX3-217ENST00000546164 GPSM2P81274 684 aa15.02■□□□□ -0
YBX3-217ENST00000546164 FOXO4P98177 505 aa15.02■□□□□ -0
YBX3-217ENST00000546164 NIM1KQ8IY84 436 aa15.02■□□□□ -0
YBX3-217ENST00000546164 GPC2Q8N158 579 aa15.02■□□□□ -0
YBX3-217ENST00000546164 BSDC1Q9NW68 430 aaPredicted RBP15.02■□□□□ -0
YBX3-217ENST00000546164 LTBP1Q14766 1721 aa15.02□□□□□ -0.01
YBX3-217ENST00000546164 ITGA6P23229 1130 aa15.01□□□□□ -0.01
YBX3-217ENST00000546164 EIF6P56537 245 aaKnown RBP15.01□□□□□ -0.01
YBX3-217ENST00000546164 FAM161AQ3B820 660 aa15.01□□□□□ -0.01
YBX3-217ENST00000546164 C16orf71Q8IYS4 520 aaPredicted RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms