RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 ANKRD18BA2A2Z9 1011 aa9.02□□□□□ -0.96
VPS13D-211ENST00000543710 PRPHP41219 470 aa9.02□□□□□ -0.96
VPS13D-211ENST00000543710 TMPOP42166 694 aaKnown RBP9.02□□□□□ -0.96
VPS13D-211ENST00000543710 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.02□□□□□ -0.962e-6■■□□□ 11.9
VPS13D-211ENST00000543710 PARD3Q8TEW0 1356 aa9.02□□□□□ -0.96
VPS13D-211ENST00000543710 CLASP1Q7Z460 1538 aa9.02□□□□□ -0.96
VPS13D-211ENST00000543710 NEO1Q92859 1461 aa9.02□□□□□ -0.97
VPS13D-211ENST00000543710 CASTP20810 708 aaKnown RBP9.02□□□□□ -0.97
VPS13D-211ENST00000543710 KIF18AQ8NI77 898 aa9.02□□□□□ -0.97
VPS13D-211ENST00000543710 NPHP4O75161 1426 aaPredicted RBP9.02□□□□□ -0.97
VPS13D-211ENST00000543710 SLC4A2P04920 1241 aa9.02□□□□□ -0.97
VPS13D-211ENST00000543710 CLUL1Q15846 466 aa9.02□□□□□ -0.97
VPS13D-211ENST00000543710 TMEM266Q2M3C6 531 aa9.02□□□□□ -0.97
VPS13D-211ENST00000543710 ZGPATQ8N5A5 531 aaKnown RBP9.02□□□□□ -0.97
VPS13D-211ENST00000543710 ANKRD24Q8TF21 1146 aa9.02□□□□□ -0.97
VPS13D-211ENST00000543710 TRMT112Q9UI30 125 aaKnown RBP9.02□□□□□ -0.97
VPS13D-211ENST00000543710 PDCL3Q9H2J4 239 aa9.02□□□□□ -0.97
VPS13D-211ENST00000543710 GGNBP2Q9H3C7 697 aa9.02□□□□□ -0.97
VPS13D-211ENST00000543710 A6NNZ2 444 aa9.02□□□□□ -0.97
VPS13D-211ENST00000543710 TRIM37O94972 964 aa9.02□□□□□ -0.97
VPS13D-211ENST00000543710 YEATS4O95619 227 aa9.02□□□□□ -0.97
VPS13D-211ENST00000543710 TUBB8Q3ZCM7 444 aa9.02□□□□□ -0.97
VPS13D-211ENST00000543710 COL17A1Q9UMD9 1497 aaPredicted RBP9.02□□□□□ -0.97
VPS13D-211ENST00000543710 BTBD11A6QL63 1104 aa9.01□□□□□ -0.97
VPS13D-211ENST00000543710 RBM25P49756 843 aaKnown RBP9.01□□□□□ -0.97
VPS13D-211ENST00000543710 PPP2R3CQ969Q6 453 aa9.01□□□□□ -0.97
VPS13D-211ENST00000543710 IVLP07476 585 aa9.01□□□□□ -0.97
VPS13D-211ENST00000543710 UBAC1Q9BSL1 405 aa9.01□□□□□ -0.97
VPS13D-211ENST00000543710 ZNF644Q9H582 1327 aaPredicted RBP9.01□□□□□ -0.97
VPS13D-211ENST00000543710 ESPNB1AK53 854 aa9.01□□□□□ -0.97
VPS13D-211ENST00000543710 ME1P48163 572 aa9.01□□□□□ -0.97
VPS13D-211ENST00000543710 LRSAM1Q6UWE0 723 aa9.01□□□□□ -0.97
VPS13D-211ENST00000543710 PLCD3Q8N3E9 789 aa9.01□□□□□ -0.97
VPS13D-211ENST00000543710 RTL1A6NKG5 1358 aa9.01□□□□□ -0.97
VPS13D-211ENST00000543710 RAI14Q9P0K7 980 aa9.01□□□□□ -0.97
VPS13D-211ENST00000543710 AACSQ86V21 672 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 SH2D4AQ9H788 454 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 LIMCH1Q9UPQ0 1083 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 NR2E3Q9Y5X4 410 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 BAG3O95817 575 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 HMOX1P09601 288 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 SSRP1Q08945 709 aaKnown RBP9□□□□□ -0.97
VPS13D-211ENST00000543710 ZNF804AQ7Z570 1209 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 KIAA1328Q86T90 577 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 STK11IPQ8N1F8 1099 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 SMCR8Q8TEV9 937 aaPredicted RBP9□□□□□ -0.97
VPS13D-211ENST00000543710 STAMBPO95630 424 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 ZFYP08048 801 aaPredicted RBP9□□□□□ -0.97
VPS13D-211ENST00000543710 RARSP54136 660 aaKnown RBP9□□□□□ -0.97
VPS13D-211ENST00000543710 CC2D2BQ6DHV5 1058 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 DNAAF4Q8WXU2 420 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 SEC63Q9UGP8 760 aaKnown RBP9□□□□□ -0.97
VPS13D-211ENST00000543710 PSDA5PKW4 1024 aaPredicted RBP9□□□□□ -0.97
VPS13D-211ENST00000543710 SLC5A1P13866 664 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 PTPN14Q15678 1187 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9□□□□□ -0.97
VPS13D-211ENST00000543710 IQCDQ96DY2 449 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 BAG4O95429 457 aaKnown RBP9□□□□□ -0.97
VPS13D-211ENST00000543710 POLR3DP05423 398 aaPredicted RBP9□□□□□ -0.97
VPS13D-211ENST00000543710 UBE2HP62256 183 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 KLHL40Q2TBA0 621 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 NBPF11Q86T75 865 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 CUL5Q93034 780 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 ABCC1P33527 1531 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 MYO5CQ9NQX4 1742 aa9□□□□□ -0.97
VPS13D-211ENST00000543710 IDI1Q13907 227 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 TAF7Q15545 349 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-211ENST00000543710 GRIPAP1Q4V328 841 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 JAKMIP1Q96N16 626 aaKnown RBP8.99□□□□□ -0.97
VPS13D-211ENST00000543710 RTL9Q8NET4 1388 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 SOCS7O14512 581 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 UQCRFS1P1P0C7P4 283 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 USP5P45974 858 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 UBXN2AP68543 259 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 DUSP27Q5VZP5 1158 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 TSGA10Q9BZW7 698 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 A2MP01023 1474 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 RIMS2Q9UQ26 1411 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 TTC41PQ6P2S7 1318 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 SFPQP23246 707 aaKnown RBP eCLIP8.99□□□□□ -0.97
VPS13D-211ENST00000543710 FAM193AP78312 1265 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 R3HDM1Q15032 1099 aaKnown RBP8.99□□□□□ -0.97
VPS13D-211ENST00000543710 CFAP70Q5T0N1 1121 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 TMTC2Q8N394 836 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 ELL2O00472 640 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-211ENST00000543710 TERF1P54274 439 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 BBXQ8WY36 941 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-211ENST00000543710 NSRP1Q9H0G5 558 aaKnown RBP8.99□□□□□ -0.97
VPS13D-211ENST00000543710 CNNM2Q9H8M5 875 aa8.99□□□□□ -0.97
VPS13D-211ENST00000543710 MAST3O60307 1309 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 PCDH11XQ9BZA7 1347 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 PCDH11YQ9BZA8 1340 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 SPAG1Q07617 926 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 NCBP1Q09161 790 aaKnown RBP8.98□□□□□ -0.97
VPS13D-211ENST00000543710 DCAF15Q66K64 600 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 FAM200AQ8TCP9 573 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 UBXN4Q92575 508 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 LRRC45Q96CN5 670 aa8.98□□□□□ -0.97
VPS13D-211ENST00000543710 BLMP54132 1417 aaPredicted RBP8.98□□□□□ -0.97
VPS13D-211ENST00000543710 ZFYVE16Q7Z3T8 1539 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms