RNA–Protein interactions for RNA: ENST00000542817.1

NPIPB3-210, Transcript of nuclear pore complex interacting protein family member B3, human

TSL 5 BASIC

Gene NPIPB3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB3-210	ENST00000542817	RFX5	P48382	616 aa	Predicted RBP	13.42	□□□□□ -0.26
NPIPB3-210	ENST00000542817	ST5	P78524	1137 aa		13.42	□□□□□ -0.26
NPIPB3-210	ENST00000542817	MTX1	Q13505	466 aa		13.42	□□□□□ -0.26
NPIPB3-210	ENST00000542817	NLGN2	Q8NFZ4	835 aa		13.42	□□□□□ -0.26
NPIPB3-210	ENST00000542817	GREM2	Q9H772	168 aa		13.42	□□□□□ -0.26
NPIPB3-210	ENST00000542817	PCDHB15	Q9Y5E8	787 aa		13.42	□□□□□ -0.26
NPIPB3-210	ENST00000542817	GNAI2	P04899	355 aa		13.41	□□□□□ -0.26
NPIPB3-210	ENST00000542817	HOXA10	P31260	410 aa	Predicted RBP	13.41	□□□□□ -0.26
NPIPB3-210	ENST00000542817	LMBR1L	Q6UX01	489 aa		13.41	□□□□□ -0.26
NPIPB3-210	ENST00000542817	SEC31B	Q9NQW1	1179 aa		13.41	□□□□□ -0.26
NPIPB3-210	ENST00000542817	CD2AP	Q9Y5K6	639 aa		13.41	□□□□□ -0.26
NPIPB3-210	ENST00000542817	RTL9	Q8NET4	1388 aa		13.41	□□□□□ -0.26
NPIPB3-210	ENST00000542817	PNMA6E	A0A0J9YXQ4	647 aa		13.4	□□□□□ -0.26
NPIPB3-210	ENST00000542817	DPEP1	P16444	411 aa		13.4	□□□□□ -0.26
NPIPB3-210	ENST00000542817	GTF2E1	P29083	439 aa	Predicted RBP	13.4	□□□□□ -0.26
NPIPB3-210	ENST00000542817	FAM161A	Q3B820	660 aa		13.4	□□□□□ -0.26
NPIPB3-210	ENST00000542817	CEP85	Q6P2H3	762 aa		13.4	□□□□□ -0.26
NPIPB3-210	ENST00000542817	NLRP3	Q96P20	1036 aa		13.4	□□□□□ -0.26
NPIPB3-210	ENST00000542817	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.4	□□□□□ -0.26
NPIPB3-210	ENST00000542817	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.4	□□□□□ -0.26
NPIPB3-210	ENST00000542817		A0A0G2JLW4	131 aa		13.39	□□□□□ -0.27
NPIPB3-210	ENST00000542817	PDE6B	P35913	854 aa		13.39	□□□□□ -0.27
NPIPB3-210	ENST00000542817	C2CD5	Q86YS7	1000 aa		13.39	□□□□□ -0.27
NPIPB3-210	ENST00000542817	TAF1	P21675	1872 aa		13.39	□□□□□ -0.27
NPIPB3-210	ENST00000542817	TGFB2	P61812	414 aa		13.39	□□□□□ -0.27
NPIPB3-210	ENST00000542817	ATP8B2	P98198	1209 aa		13.39	□□□□□ -0.27
NPIPB3-210	ENST00000542817	POLA2	Q14181	598 aa		13.39	□□□□□ -0.27
NPIPB3-210	ENST00000542817	CELF1	Q92879	486 aa	Known RBP	13.39	□□□□□ -0.27
NPIPB3-210	ENST00000542817	SYT17	Q9BSW7	474 aa		13.39	□□□□□ -0.27
NPIPB3-210	ENST00000542817	MYH3	P11055	1940 aa		13.38	□□□□□ -0.27
NPIPB3-210	ENST00000542817	PTPN12	Q05209	780 aa	Known RBP	13.38	□□□□□ -0.27
NPIPB3-210	ENST00000542817	KLHDC4	Q8TBB5	520 aa		13.38	□□□□□ -0.27
NPIPB3-210	ENST00000542817	SSH3	Q8TE77	659 aa		13.38	□□□□□ -0.27
NPIPB3-210	ENST00000542817	CRAMP1	Q96RY5	1269 aa		13.38	□□□□□ -0.27
NPIPB3-210	ENST00000542817	DLEC1	Q9Y238	1755 aa		13.37	□□□□□ -0.27
NPIPB3-210	ENST00000542817	BRCA1	P38398	1863 aa	Known RBP	13.37	□□□□□ -0.27
NPIPB3-210	ENST00000542817	NPHP1	O15259	732 aa		13.37	□□□□□ -0.27
NPIPB3-210	ENST00000542817	HSP90B1	P14625	803 aa	Known RBP	13.37	□□□□□ -0.27
NPIPB3-210	ENST00000542817	NPR1	P16066	1061 aa		13.37	□□□□□ -0.27
NPIPB3-210	ENST00000542817	ITGA6	P23229	1130 aa		13.37	□□□□□ -0.27
NPIPB3-210	ENST00000542817	CCDC152	Q4G0S7	254 aa		13.37	□□□□□ -0.27
NPIPB3-210	ENST00000542817	STYK1	Q6J9G0	422 aa		13.37	□□□□□ -0.27
NPIPB3-210	ENST00000542817	C7orf43	Q8WVR3	580 aa		13.37	□□□□□ -0.27
NPIPB3-210	ENST00000542817	MASTL	Q96GX5	879 aa		13.37	□□□□□ -0.27
NPIPB3-210	ENST00000542817	ZNF594	Q96JF6	807 aa	Predicted RBP	13.37	□□□□□ -0.27
NPIPB3-210	ENST00000542817	SNED1	Q8TER0	1413 aa		13.36	□□□□□ -0.27
NPIPB3-210	ENST00000542817		H0YIN7	160 aa		13.36	□□□□□ -0.27
NPIPB3-210	ENST00000542817	GRAP	Q13588	217 aa		13.36	□□□□□ -0.27
NPIPB3-210	ENST00000542817	GRAPL	Q8TC17	118 aa	Predicted RBP	13.36	□□□□□ -0.27
NPIPB3-210	ENST00000542817	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.36	□□□□□ -0.27
NPIPB3-210	ENST00000542817	PDZRN3	Q9UPQ7	1066 aa		13.36	□□□□□ -0.27
NPIPB3-210	ENST00000542817	PA2G4	Q9UQ80	394 aa	Known RBP	13.36	□□□□□ -0.27
NPIPB3-210	ENST00000542817	SLX4	Q8IY92	1834 aa		13.35	□□□□□ -0.27
NPIPB3-210	ENST00000542817	SRGAP3	O43295	1099 aa		13.35	□□□□□ -0.27
NPIPB3-210	ENST00000542817	OLFM4	Q6UX06	510 aa		13.35	□□□□□ -0.27
NPIPB3-210	ENST00000542817	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.35	□□□□□ -0.27
NPIPB3-210	ENST00000542817	PUS3	Q9BZE2	481 aa	Known RBP	13.35	□□□□□ -0.27
NPIPB3-210	ENST00000542817	COPRS	Q9NQ92	184 aa		13.35	□□□□□ -0.27
NPIPB3-210	ENST00000542817	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.35	□□□□□ -0.27
NPIPB3-210	ENST00000542817	RPS8	P62241	208 aa	Known RBP	13.34	□□□□□ -0.27
NPIPB3-210	ENST00000542817	AAMP	Q13685	434 aa		13.34	□□□□□ -0.27
NPIPB3-210	ENST00000542817	DDX46	Q7L014	1031 aa	Known RBP	13.34	□□□□□ -0.27
NPIPB3-210	ENST00000542817	ATG9A	Q7Z3C6	839 aa		13.34	□□□□□ -0.27
NPIPB3-210	ENST00000542817	RBM17	Q96I25	401 aa	Known RBP	13.34	□□□□□ -0.27
NPIPB3-210	ENST00000542817	CHMP4B	Q9H444	224 aa	Known RBP	13.34	□□□□□ -0.27
NPIPB3-210	ENST00000542817	HDAC5	Q9UQL6	1122 aa		13.34	□□□□□ -0.27
NPIPB3-210	ENST00000542817	NOP58	Q9Y2X3	529 aa	Known RBP	13.34	□□□□□ -0.27
NPIPB3-210	ENST00000542817	ANKRD18B	A2A2Z9	1011 aa		13.33	□□□□□ -0.28
NPIPB3-210	ENST00000542817	WTIP	A6NIX2	430 aa	Predicted RBP	13.33	□□□□□ -0.28
NPIPB3-210	ENST00000542817	IGHD	P01880	384 aa		13.33	□□□□□ -0.28
NPIPB3-210	ENST00000542817	IFIT5	Q13325	482 aa	Known RBP	13.33	□□□□□ -0.28
NPIPB3-210	ENST00000542817	LRRC24	Q50LG9	513 aa		13.33	□□□□□ -0.28
NPIPB3-210	ENST00000542817	PRPF40B	Q6NWY9	871 aa	Known RBP	13.33	□□□□□ -0.28
NPIPB3-210	ENST00000542817	KLHL34	Q8N239	644 aa		13.33	□□□□□ -0.28
NPIPB3-210	ENST00000542817	RPGR	Q92834	1020 aa	Known RBP	13.33	□□□□□ -0.28
NPIPB3-210	ENST00000542817	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.33	□□□□□ -0.28	2e-7	■□□□□ 8.5
NPIPB3-210	ENST00000542817	CHMP3	Q9Y3E7	222 aa		13.33	□□□□□ -0.28
NPIPB3-210	ENST00000542817	RIPOR2	Q9Y4F9	1068 aa		13.33	□□□□□ -0.28
NPIPB3-210	ENST00000542817	BBOX1	O75936	387 aa		13.32	□□□□□ -0.28
NPIPB3-210	ENST00000542817	CCDC57	Q2TAC2	916 aa		13.32	□□□□□ -0.28
NPIPB3-210	ENST00000542817	TTLL6	Q8N841	843 aa		13.32	□□□□□ -0.28
NPIPB3-210	ENST00000542817	CNKSR1	Q969H4	720 aa		13.32	□□□□□ -0.28
NPIPB3-210	ENST00000542817	BSDC1	Q9NW68	430 aa	Predicted RBP	13.32	□□□□□ -0.28
NPIPB3-210	ENST00000542817	PIM2	Q9P1W9	311 aa		13.32	□□□□□ -0.28
NPIPB3-210	ENST00000542817	WWC3	Q9ULE0	1092 aa		13.32	□□□□□ -0.28
NPIPB3-210	ENST00000542817	ALDH1B1	P30837	517 aa		13.31	□□□□□ -0.28
NPIPB3-210	ENST00000542817	HDAC1	Q13547	482 aa	Predicted RBP	13.31	□□□□□ -0.28
NPIPB3-210	ENST00000542817	ANKRD18A	Q8IVF6	992 aa		13.31	□□□□□ -0.28
NPIPB3-210	ENST00000542817	VGLL2	Q8N8G2	317 aa		13.31	□□□□□ -0.28
NPIPB3-210	ENST00000542817	MINPP1	Q9UNW1	487 aa		13.31	□□□□□ -0.28
NPIPB3-210	ENST00000542817	ATP6V0A2	Q9Y487	856 aa		13.31	□□□□□ -0.28
NPIPB3-210	ENST00000542817	LRRC37A	A6NMS7	1700 aa		13.31	□□□□□ -0.28
NPIPB3-210	ENST00000542817	LTBP1	Q14766	1721 aa		13.31	□□□□□ -0.28
NPIPB3-210	ENST00000542817	EYA2	O00167	538 aa		13.3	□□□□□ -0.28
NPIPB3-210	ENST00000542817	PPEF1	O14829	653 aa	Predicted RBP	13.3	□□□□□ -0.28
NPIPB3-210	ENST00000542817	SASH1	O94885	1247 aa		13.3	□□□□□ -0.28
NPIPB3-210	ENST00000542817	SP8	Q8IXZ3	490 aa		13.3	□□□□□ -0.28
NPIPB3-210	ENST00000542817	CDC5L	Q99459	802 aa	Known RBP	13.3	□□□□□ -0.28
NPIPB3-210	ENST00000542817	DCTPP1	Q9H773	170 aa		13.3	□□□□□ -0.28
NPIPB3-210	ENST00000542817	DUOX1	Q9NRD9	1551 aa		13.3	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms