RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 CD99L2Q8TCZ2 262 aa10.7□□□□□ -0.7
CHMP4A-209ENST00000542700 GGA3Q9NZ52 723 aa10.7□□□□□ -0.7
CHMP4A-209ENST00000542700 LAMA3Q16787 3333 aa10.69□□□□□ -0.7
CHMP4A-209ENST00000542700 POLR2AP24928 1970 aaKnown RBP10.69□□□□□ -0.7
CHMP4A-209ENST00000542700 PRAMEF22A3QJZ6 481 aa10.69□□□□□ -0.7
CHMP4A-209ENST00000542700 WTIPA6NIX2 430 aaPredicted RBP10.69□□□□□ -0.7
CHMP4A-209ENST00000542700 GTF2E1P29083 439 aaPredicted RBP10.69□□□□□ -0.7
CHMP4A-209ENST00000542700 HOXD11P31277 338 aaPredicted RBP10.69□□□□□ -0.7
CHMP4A-209ENST00000542700 AEBP1Q8IUX7 1158 aa10.69□□□□□ -0.7
CHMP4A-209ENST00000542700 RPGRQ92834 1020 aaKnown RBP10.69□□□□□ -0.7
CHMP4A-209ENST00000542700 LGR6Q9HBX8 967 aa10.69□□□□□ -0.7
CHMP4A-209ENST00000542700 MTMR10Q9NXD2 777 aa10.69□□□□□ -0.7
CHMP4A-209ENST00000542700 ABCC12Q96J65 1359 aa10.68□□□□□ -0.7
CHMP4A-209ENST00000542700 ASTN2O75129 1339 aaPredicted RBP10.68□□□□□ -0.7
CHMP4A-209ENST00000542700 UBE2Q2LH0YL09 131 aa10.68□□□□□ -0.7
CHMP4A-209ENST00000542700 FKBP1BP68106 108 aa10.68□□□□□ -0.7
CHMP4A-209ENST00000542700 CRY2Q49AN0 593 aa10.68□□□□□ -0.7
CHMP4A-209ENST00000542700 ERO1AQ96HE7 468 aa10.68□□□□□ -0.7
CHMP4A-209ENST00000542700 POLKQ9UBT6 870 aa10.68□□□□□ -0.7
CHMP4A-209ENST00000542700 NIP7Q9Y221 180 aaKnown RBP eCLIP10.68□□□□□ -0.7
CHMP4A-209ENST00000542700 UBR2Q8IWV8 1755 aa10.67□□□□□ -0.7
CHMP4A-209ENST00000542700 A1BGP04217 495 aa10.67□□□□□ -0.7
CHMP4A-209ENST00000542700 SLC9C1Q4G0N8 1177 aa10.67□□□□□ -0.7
CHMP4A-209ENST00000542700 EFCC1Q9HA90 598 aa10.67□□□□□ -0.7
CHMP4A-209ENST00000542700 ZNF652Q9Y2D9 606 aa10.67□□□□□ -0.7
CHMP4A-209ENST00000542700 VCANP13611 3396 aa10.67□□□□□ -0.7
CHMP4A-209ENST00000542700 YDJCA8MPS7 323 aa10.66□□□□□ -0.7
CHMP4A-209ENST00000542700 KIF4BQ2VIQ3 1234 aa10.66□□□□□ -0.7
CHMP4A-209ENST00000542700 GPR153Q6NV75 609 aa10.66□□□□□ -0.7
CHMP4A-209ENST00000542700 TTC5Q8N0Z6 440 aa10.66□□□□□ -0.7
CHMP4A-209ENST00000542700 VPS33BQ9H267 617 aa10.66□□□□□ -0.7
CHMP4A-209ENST00000542700 NR2E3Q9Y5X4 410 aa10.66□□□□□ -0.7
CHMP4A-209ENST00000542700 ZBTB7BO15156 539 aaPredicted RBP10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 RNMTO43148 476 aaKnown RBP10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 ALDH1A1P00352 501 aa10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 PIP4K2AP48426 406 aaPredicted RBP10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 CLEC4GQ6UXB4 293 aa10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 NBPF11Q86T75 865 aa10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 SUPT20HQ8NEM7 779 aa10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 DPF2Q92785 391 aa10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 ZNF496Q96IT1 587 aaPredicted RBP10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 HTATIP2Q9BUP3 242 aa10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 TMX4Q9H1E5 349 aaPredicted RBP10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 STAP2Q9UGK3 403 aa10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 PTCH2Q9Y6C5 1203 aa10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 RIC1Q4ADV7 1423 aa10.65□□□□□ -0.7
CHMP4A-209ENST00000542700 HOXA10P31260 410 aaPredicted RBP10.64□□□□□ -0.71
CHMP4A-209ENST00000542700 CAP1Q01518 475 aa10.64□□□□□ -0.71
CHMP4A-209ENST00000542700 KIAA2012Q0VF49 1180 aa10.64□□□□□ -0.71
CHMP4A-209ENST00000542700 TTLL12Q14166 644 aaPredicted RBP10.64□□□□□ -0.71
CHMP4A-209ENST00000542700 NUTM1Q86Y26 1132 aa10.64□□□□□ -0.71
CHMP4A-209ENST00000542700 SHISA4Q96DD7 197 aa10.64□□□□□ -0.71
CHMP4A-209ENST00000542700 TESK2Q96S53 571 aa10.64□□□□□ -0.71
CHMP4A-209ENST00000542700 HEG1Q9ULI3 1381 aa10.64□□□□□ -0.71
CHMP4A-209ENST00000542700 KIF7Q2M1P5 1343 aa10.63□□□□□ -0.71
CHMP4A-209ENST00000542700 RPTORQ8N122 1335 aa10.63□□□□□ -0.71
CHMP4A-209ENST00000542700 PSMD14O00487 310 aa10.63□□□□□ -0.71
CHMP4A-209ENST00000542700 ANGEL2Q5VTE6 544 aaKnown RBP10.63□□□□□ -0.71
CHMP4A-209ENST00000542700 RBM17Q96I25 401 aaKnown RBP10.63□□□□□ -0.71
CHMP4A-209ENST00000542700 TMEM265A0A087WTH1 108 aa10.62□□□□□ -0.71
CHMP4A-209ENST00000542700 DPP8Q6V1X1 898 aaPredicted RBP10.62□□□□□ -0.71
CHMP4A-209ENST00000542700 IFNL1Q8IU54 200 aa10.62□□□□□ -0.71
CHMP4A-209ENST00000542700 SH3TC2Q8TF17 1288 aa10.62□□□□□ -0.71
CHMP4A-209ENST00000542700 CRAMP1Q96RY5 1269 aa10.62□□□□□ -0.71
CHMP4A-209ENST00000542700 TEX13AQ9BXU3 409 aaPredicted RBP10.62□□□□□ -0.71
CHMP4A-209ENST00000542700 RTFDC1Q9BY42 306 aaPredicted RBP10.62□□□□□ -0.71
CHMP4A-209ENST00000542700 SCAF8Q9UPN6 1271 aaKnown RBP10.62□□□□□ -0.71
CHMP4A-209ENST00000542700 ATP6V0A2Q9Y487 856 aa10.62□□□□□ -0.71
CHMP4A-209ENST00000542700 TCIRG1Q13488 830 aa10.61□□□□□ -0.71
CHMP4A-209ENST00000542700 SULT6B1Q6IMI4 303 aa10.61□□□□□ -0.71
CHMP4A-209ENST00000542700 SNX27Q96L92 541 aa10.61□□□□□ -0.71
CHMP4A-209ENST00000542700 CARD14Q9BXL6 1004 aa10.61□□□□□ -0.71
CHMP4A-209ENST00000542700 SPTBN5Q9NRC6 3674 aaKnown RBP10.61□□□□□ -0.71
CHMP4A-209ENST00000542700 CRHR2Q13324 411 aa10.6□□□□□ -0.71
CHMP4A-209ENST00000542700 PRAMEF18Q5VWM3 479 aa10.6□□□□□ -0.71
CHMP4A-209ENST00000542700 TTC28Q96AY4 2481 aa10.6□□□□□ -0.71
CHMP4A-209ENST00000542700 IGF2BP3O00425 579 aaKnown RBP eCLIP10.59□□□□□ -0.71
CHMP4A-209ENST00000542700 RPS12P25398 132 aaKnown RBP10.59□□□□□ -0.71
CHMP4A-209ENST00000542700 SP3Q02447 781 aa10.59□□□□□ -0.71
CHMP4A-209ENST00000542700 SPRYD7Q5W111 196 aa10.59□□□□□ -0.71
CHMP4A-209ENST00000542700 C3orf67Q6ZVT6 689 aa10.59□□□□□ -0.71
CHMP4A-209ENST00000542700 NYXQ9GZU5 481 aa10.59□□□□□ -0.71
CHMP4A-209ENST00000542700 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.59□□□□□ -0.71
CHMP4A-209ENST00000542700 KDM3BQ7LBC6 1761 aa10.59□□□□□ -0.71
CHMP4A-209ENST00000542700 MANSC4A6NHS7 340 aaPredicted RBP10.58□□□□□ -0.72
CHMP4A-209ENST00000542700 EVI5O60447 810 aa10.58□□□□□ -0.72
CHMP4A-209ENST00000542700 BCAMP50895 628 aa10.58□□□□□ -0.72
CHMP4A-209ENST00000542700 PTPN12Q05209 780 aaKnown RBP10.58□□□□□ -0.72
CHMP4A-209ENST00000542700 SCARF1Q14162 830 aa10.58□□□□□ -0.72
CHMP4A-209ENST00000542700 HLFQ16534 295 aa10.58□□□□□ -0.72
CHMP4A-209ENST00000542700 UBE2Q1Q7Z7E8 422 aa10.58□□□□□ -0.72
CHMP4A-209ENST00000542700 DBNDD1Q9H9R9 158 aa10.58□□□□□ -0.72
CHMP4A-209ENST00000542700 PRKG1Q13976 671 aa10.57□□□□□ -0.72
CHMP4A-209ENST00000542700 ZNF790Q6PG37 636 aa10.57□□□□□ -0.72
CHMP4A-209ENST00000542700 SYMPKQ92797 1274 aaKnown RBP10.57□□□□□ -0.72
CHMP4A-209ENST00000542700 GUCD1Q96NT3 240 aa10.57□□□□□ -0.72
CHMP4A-209ENST00000542700 IRS2Q9Y4H2 1338 aa10.57□□□□□ -0.72
CHMP4A-209ENST00000542700 RTL9Q8NET4 1388 aa10.56□□□□□ -0.72
CHMP4A-209ENST00000542700 TNFRSF10AO00220 468 aa10.56□□□□□ -0.72
CHMP4A-209ENST00000542700 MAP3K12Q12852 859 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms