RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 UBE2OQ9C0C9 1292 aaKnown RBP5.85□□□□□ -1.47
USP28-210ENST00000542033 EGFL7Q9UHF1 273 aa5.85□□□□□ -1.47
USP28-210ENST00000542033 FNDC3AQ9Y2H6 1198 aaKnown RBP5.85□□□□□ -1.47
USP28-210ENST00000542033 H3BRB1 525 aa5.84□□□□□ -1.47
USP28-210ENST00000542033 XYLBO75191 536 aa5.84□□□□□ -1.47
USP28-210ENST00000542033 FAM13AO94988 1023 aa5.84□□□□□ -1.47
USP28-210ENST00000542033 MAP3K6O95382 1288 aa5.84□□□□□ -1.47
USP28-210ENST00000542033 RARAP10276 462 aa5.84□□□□□ -1.47
USP28-210ENST00000542033 PCSK2P16519 638 aa5.84□□□□□ -1.47
USP28-210ENST00000542033 TBC1D8BQ0IIM8 1120 aa5.84□□□□□ -1.47
USP28-210ENST00000542033 AAMPQ13685 434 aa5.84□□□□□ -1.47
USP28-210ENST00000542033 NOM1Q5C9Z4 860 aaKnown RBP5.84□□□□□ -1.47
USP28-210ENST00000542033 ALKBH2Q6NS38 261 aa5.84□□□□□ -1.47
USP28-210ENST00000542033 TTC16Q8NEE8 873 aa5.84□□□□□ -1.47
USP28-210ENST00000542033 TUT1Q9H6E5 874 aaKnown RBP5.84□□□□□ -1.47
USP28-210ENST00000542033 GNEQ9Y223 722 aaKnown RBP5.84□□□□□ -1.47
USP28-210ENST00000542033 IVNS1ABPQ9Y6Y0 642 aa5.84□□□□□ -1.47
USP28-210ENST00000542033 ICMTO60725 284 aa5.83□□□□□ -1.48
USP28-210ENST00000542033 MPSTP25325 297 aa5.83□□□□□ -1.48
USP28-210ENST00000542033 GRNP28799 593 aaKnown RBP5.83□□□□□ -1.48
USP28-210ENST00000542033 KRT25Q7Z3Z0 450 aa5.83□□□□□ -1.48
USP28-210ENST00000542033 IGFLR1Q9H665 355 aa5.83□□□□□ -1.48
USP28-210ENST00000542033 UBAP1LF5GYI3 381 aa5.82□□□□□ -1.48
USP28-210ENST00000542033 GNB5O14775 395 aa5.82□□□□□ -1.48
USP28-210ENST00000542033 SASH3O75995 380 aa5.82□□□□□ -1.48
USP28-210ENST00000542033 DGKGP49619 791 aa5.82□□□□□ -1.48
USP28-210ENST00000542033 DHX32Q7L7V1 743 aaKnown RBP5.82□□□□□ -1.48
USP28-210ENST00000542033 GPR152Q8TDT2 470 aa5.82□□□□□ -1.48
USP28-210ENST00000542033 MDFIQ99750 246 aa5.82□□□□□ -1.48
USP28-210ENST00000542033 DNAJB12Q9NXW2 375 aaKnown RBP5.82□□□□□ -1.48
USP28-210ENST00000542033 NOP53Q9NZM5 478 aaKnown RBP5.82□□□□□ -1.48
USP28-210ENST00000542033 SLC6A14Q9UN76 642 aa5.82□□□□□ -1.48
USP28-210ENST00000542033 USP20Q9Y2K6 914 aa5.82□□□□□ -1.48
USP28-210ENST00000542033 KCNMB2Q9Y691 235 aa5.82□□□□□ -1.48
USP28-210ENST00000542033 CNTNAP5Q8WYK1 1306 aa5.81□□□□□ -1.48
USP28-210ENST00000542033 PSAPP07602 524 aa5.81□□□□□ -1.48
USP28-210ENST00000542033 TARSP26639 723 aaKnown RBP5.81□□□□□ -1.48
USP28-210ENST00000542033 IRS1P35568 1242 aa5.81□□□□□ -1.48
USP28-210ENST00000542033 EIF1AXP47813 144 aaKnown RBP5.81□□□□□ -1.48
USP28-210ENST00000542033 FAM26DQ5JW98 314 aa5.81□□□□□ -1.48
USP28-210ENST00000542033 ALYREFQ86V81 257 aaKnown RBP5.81□□□□□ -1.48
USP28-210ENST00000542033 NLRP13Q86W25 1043 aa5.81□□□□□ -1.48
USP28-210ENST00000542033 BIN2Q9UBW5 565 aaPredicted RBP5.81□□□□□ -1.48
USP28-210ENST00000542033 ZBTB7CA1YPR0 619 aa5.8□□□□□ -1.48
USP28-210ENST00000542033 SOWAHDA6NJG2 315 aa5.8□□□□□ -1.48
USP28-210ENST00000542033 SPDYE3A6NKU9 549 aa5.8□□□□□ -1.48
USP28-210ENST00000542033 ZBTB39O15060 712 aa5.8□□□□□ -1.48
USP28-210ENST00000542033 NPR3P17342 541 aa5.8□□□□□ -1.48
USP28-210ENST00000542033 MZF1P28698 734 aaPredicted RBP5.8□□□□□ -1.48
USP28-210ENST00000542033 NRLP54845 237 aa5.8□□□□□ -1.48
USP28-210ENST00000542033 SNRPNP63162 240 aaKnown RBP5.8□□□□□ -1.48
USP28-210ENST00000542033 GPLD1P80108 840 aa5.8□□□□□ -1.48
USP28-210ENST00000542033 ATCAYQ86WG3 371 aa5.8□□□□□ -1.48
USP28-210ENST00000542033 TMEM151AQ8N4L1 468 aa5.8□□□□□ -1.48
USP28-210ENST00000542033 TRPM4Q8TD43 1214 aa5.8□□□□□ -1.48
USP28-210ENST00000542033 TLR7Q9NYK1 1049 aaKnown RBP5.8□□□□□ -1.48
USP28-210ENST00000542033 M0R082 166 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 SOX18P35713 384 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 USP5P45974 858 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 RASSF7Q02833 373 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 PLAURQ03405 335 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 DNM1Q05193 864 aaKnown RBP5.79□□□□□ -1.48
USP28-210ENST00000542033 TRIP4Q15650 581 aaPredicted RBP5.79□□□□□ -1.48
USP28-210ENST00000542033 PDE12Q6L8Q7 609 aaKnown RBP5.79□□□□□ -1.48
USP28-210ENST00000542033 LINC00114Q6XXX2 140 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 FAM35AQ86V20 835 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 ZNF417Q8TAU3 575 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 EDEM1Q92611 657 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 NUDT16Q96DE0 195 aaKnown RBP5.79□□□□□ -1.48
USP28-210ENST00000542033 ZNF587Q96SQ5 575 aaPredicted RBP5.79□□□□□ -1.48
USP28-210ENST00000542033 RBSNQ9H1K0 784 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 PRDM6Q9NQX0 595 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 ZFATQ9P243 1243 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 BRPF3Q9ULD4 1205 aa5.79□□□□□ -1.48
USP28-210ENST00000542033 LILRB5O75023 590 aa5.78□□□□□ -1.48
USP28-210ENST00000542033 GDF11O95390 407 aa5.78□□□□□ -1.48
USP28-210ENST00000542033 ALBP02768 609 aa5.78□□□□□ -1.48
USP28-210ENST00000542033 HOXB4P17483 251 aaPredicted RBP5.78□□□□□ -1.48
USP28-210ENST00000542033 EHHADHQ08426 723 aa5.78□□□□□ -1.48
USP28-210ENST00000542033 TTC39BQ5VTQ0 682 aaPredicted RBP5.78□□□□□ -1.48
USP28-210ENST00000542033 MICALL1Q8N3F8 863 aa5.78□□□□□ -1.48
USP28-210ENST00000542033 FRRS1LQ9P0K9 344 aa5.78□□□□□ -1.48
USP28-210ENST00000542033 NDUFB5O43674 189 aa5.77□□□□□ -1.49
USP28-210ENST00000542033 MMP20O60882 483 aa5.77□□□□□ -1.49
USP28-210ENST00000542033 RGS9O75916 674 aaPredicted RBP5.77□□□□□ -1.49
USP28-210ENST00000542033 GHRHP01286 108 aa5.77□□□□□ -1.49
USP28-210ENST00000542033 PDGFAP04085 211 aa5.77□□□□□ -1.49
USP28-210ENST00000542033 HOXD8P13378 290 aaPredicted RBP5.77□□□□□ -1.49
USP28-210ENST00000542033 CPB1P15086 417 aa5.77□□□□□ -1.49
USP28-210ENST00000542033 GSK3AP49840 483 aa5.77□□□□□ -1.49
USP28-210ENST00000542033 C8orf34Q49A92 452 aa5.77□□□□□ -1.49
USP28-210ENST00000542033 PSAPL1Q6NUJ1 521 aa5.77□□□□□ -1.49
USP28-210ENST00000542033 ELMSAN1Q6PJG2 1045 aa5.77□□□□□ -1.49
USP28-210ENST00000542033 ZNF438Q7Z4V0 828 aa5.77□□□□□ -1.49
USP28-210ENST00000542033 JPH1Q9HDC5 661 aaPredicted RBP5.77□□□□□ -1.49
USP28-210ENST00000542033 ABI2Q9NYB9 513 aaPredicted RBP5.77□□□□□ -1.49
USP28-210ENST00000542033 POLIQ9UNA4 740 aa5.77□□□□□ -1.49
USP28-210ENST00000542033 STARD13Q9Y3M8 1113 aa5.77□□□□□ -1.49
USP28-210ENST00000542033 EIF2AK2P19525 551 aaKnown RBP5.76□□□□□ -1.49
USP28-210ENST00000542033 ARHGAP4P98171 946 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms