RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 CCDC93Q567U6 631 aa12.41□□□□□ -0.42
YBX3-212ENST00000542002 SOGA3Q5TF21 947 aa12.41□□□□□ -0.42
YBX3-212ENST00000542002 DDX46Q7L014 1031 aaKnown RBP12.41□□□□□ -0.42
YBX3-212ENST00000542002 UBE3BQ7Z3V4 1068 aa12.41□□□□□ -0.42
YBX3-212ENST00000542002 RTKN2Q8IZC4 609 aa12.41□□□□□ -0.42
YBX3-212ENST00000542002 GRAPLQ8TC17 118 aaPredicted RBP12.41□□□□□ -0.42
YBX3-212ENST00000542002 ZNF277Q9NRM2 450 aaPredicted RBP12.41□□□□□ -0.42
YBX3-212ENST00000542002 CDHR2Q9BYE9 1310 aa12.4□□□□□ -0.42
YBX3-212ENST00000542002 FKBP4Q02790 459 aaKnown RBP eCLIP12.4□□□□□ -0.42
YBX3-212ENST00000542002 ALDH1L2Q3SY69 923 aa12.4□□□□□ -0.42
YBX3-212ENST00000542002 SP8Q8IXZ3 490 aa12.4□□□□□ -0.42
YBX3-212ENST00000542002 TTLL11Q8NHH1 800 aa12.4□□□□□ -0.42
YBX3-212ENST00000542002 RARSP54136 660 aaKnown RBP12.39□□□□□ -0.43
YBX3-212ENST00000542002 SLC4A10Q6U841 1118 aa12.39□□□□□ -0.43
YBX3-212ENST00000542002 PSMD1Q99460 953 aa12.39□□□□□ -0.43
YBX3-212ENST00000542002 NOB1Q9ULX3 412 aaKnown RBP12.39□□□□□ -0.43
YBX3-212ENST00000542002 DDX60Q8IY21 1712 aaKnown RBP12.38□□□□□ -0.43
YBX3-212ENST00000542002 CT47B1P0C2W7 299 aaPredicted RBP12.38□□□□□ -0.43
YBX3-212ENST00000542002 CTSWP56202 376 aa12.38□□□□□ -0.43
YBX3-212ENST00000542002 RPS8P62241 208 aaKnown RBP12.38□□□□□ -0.43
YBX3-212ENST00000542002 FOXO4P98177 505 aa12.38□□□□□ -0.43
YBX3-212ENST00000542002 EPHA10Q5JZY3 1008 aa12.38□□□□□ -0.43
YBX3-212ENST00000542002 CC2D2BQ6DHV5 1058 aa12.38□□□□□ -0.43
YBX3-212ENST00000542002 GREM2Q9H772 168 aa12.38□□□□□ -0.43
YBX3-212ENST00000542002 GPBP1L1Q9HC44 474 aaPredicted RBP12.38□□□□□ -0.43
YBX3-212ENST00000542002 NMRK2Q9NPI5 230 aa12.38□□□□□ -0.43
YBX3-212ENST00000542002 SMC4Q9NTJ3 1288 aa12.38□□□□□ -0.43
YBX3-212ENST00000542002 WTIPA6NIX2 430 aaPredicted RBP12.37□□□□□ -0.43
YBX3-212ENST00000542002 POTECB2RU33 542 aa12.37□□□□□ -0.43
YBX3-212ENST00000542002 KIF3CO14782 793 aa12.37□□□□□ -0.43
YBX3-212ENST00000542002 BCAR3O75815 825 aa12.37□□□□□ -0.43
YBX3-212ENST00000542002 CSF1RP07333 972 aa12.37□□□□□ -0.43
YBX3-212ENST00000542002 BRPF1P55201 1214 aaPredicted RBP12.37□□□□□ -0.43
YBX3-212ENST00000542002 CCDC152Q4G0S7 254 aa12.37□□□□□ -0.43
YBX3-212ENST00000542002 KAZALD1Q96I82 304 aa12.37□□□□□ -0.43
YBX3-212ENST00000542002 PLA2G12BQ9BX93 195 aa12.37□□□□□ -0.43
YBX3-212ENST00000542002 RTFDC1Q9BY42 306 aaPredicted RBP12.37□□□□□ -0.43
YBX3-212ENST00000542002 SBF1O95248 1867 aa12.37□□□□□ -0.43
YBX3-212ENST00000542002 PTPRCP08575 1304 aa12.37□□□□□ -0.43
YBX3-212ENST00000542002 FER1L6Q2WGJ9 1857 aa12.36□□□□□ -0.43
YBX3-212ENST00000542002 LAMB2P55268 1798 aa12.36□□□□□ -0.43
YBX3-212ENST00000542002 GLTPD2A6NH11 291 aa12.36□□□□□ -0.43
YBX3-212ENST00000542002 NPM3O75607 178 aaKnown RBP12.36□□□□□ -0.43
YBX3-212ENST00000542002 NBPF7P0C2Y1 421 aaPredicted RBP12.36□□□□□ -0.43
YBX3-212ENST00000542002 IARSP41252 1262 aaKnown RBP12.36□□□□□ -0.43
YBX3-212ENST00000542002 GPSM2P81274 684 aa12.36□□□□□ -0.43
YBX3-212ENST00000542002 SRCIN1Q9C0H9 1055 aa12.36□□□□□ -0.43
YBX3-212ENST00000542002 RRAGCQ9HB90 399 aa12.36□□□□□ -0.43
YBX3-212ENST00000542002 TAF1P21675 1872 aa12.36□□□□□ -0.43
YBX3-212ENST00000542002 ZBED9Q6R2W3 1325 aa12.36□□□□□ -0.43
YBX3-212ENST00000542002 COL4A5P29400 1685 aa12.35□□□□□ -0.43
YBX3-212ENST00000542002 GRM8O00222 908 aa12.35□□□□□ -0.43
YBX3-212ENST00000542002 ALDH1L1O75891 902 aa12.35□□□□□ -0.43
YBX3-212ENST00000542002 HSP90B1P14625 803 aaKnown RBP12.35□□□□□ -0.43
YBX3-212ENST00000542002 GRIPAP1Q4V328 841 aa12.35□□□□□ -0.43
YBX3-212ENST00000542002 MPNDQ8N594 471 aa12.35□□□□□ -0.43
YBX3-212ENST00000542002 POLLQ9UGP5 575 aa12.35□□□□□ -0.43
YBX3-212ENST00000542002 TNNQ9UQP3 1299 aa12.35□□□□□ -0.43
YBX3-212ENST00000542002 CACNA1SQ13698 1873 aa12.35□□□□□ -0.43
YBX3-212ENST00000542002 FZD9O00144 591 aa12.34□□□□□ -0.43
YBX3-212ENST00000542002 DDNO94850 711 aaPredicted RBP12.34□□□□□ -0.43
YBX3-212ENST00000542002 AOC3Q16853 763 aa12.34□□□□□ -0.43
YBX3-212ENST00000542002 DPP8Q6V1X1 898 aaPredicted RBP12.34□□□□□ -0.43
YBX3-212ENST00000542002 GPR101Q96P66 508 aaPredicted RBP12.34□□□□□ -0.43
YBX3-212ENST00000542002 USP44Q9H0E7 712 aa12.34□□□□□ -0.43
YBX3-212ENST00000542002 NSFL1CQ9UNZ2 370 aaKnown RBP12.34□□□□□ -0.43
YBX3-212ENST00000542002 UTYO14607 1347 aa12.34□□□□□ -0.43
YBX3-212ENST00000542002 ZNF541Q9H0D2 1346 aa12.34□□□□□ -0.43
YBX3-212ENST00000542002 ZC3H4Q9UPT8 1303 aaKnown RBP12.34□□□□□ -0.43
YBX3-212ENST00000542002 ITGA6P23229 1130 aa12.33□□□□□ -0.44
YBX3-212ENST00000542002 FAM161AQ3B820 660 aa12.33□□□□□ -0.44
YBX3-212ENST00000542002 LMBR1LQ6UX01 489 aa12.33□□□□□ -0.44
YBX3-212ENST00000542002 TMC4Q7Z404 712 aa12.33□□□□□ -0.44
YBX3-212ENST00000542002 SUCLG2Q96I99 432 aa12.33□□□□□ -0.44
YBX3-212ENST00000542002 C9orf78Q9NZ63 289 aaPredicted RBP12.33□□□□□ -0.44
YBX3-212ENST00000542002 RTL9Q8NET4 1388 aa12.32□□□□□ -0.44
YBX3-212ENST00000542002 C1QTNF8P60827 252 aa12.32□□□□□ -0.44
YBX3-212ENST00000542002 ANKRD18AQ8IVF6 992 aa12.32□□□□□ -0.44
YBX3-212ENST00000542002 LARGE2Q8N3Y3 721 aa12.32□□□□□ -0.44
YBX3-212ENST00000542002 TBC1D16Q8TBP0 767 aa12.32□□□□□ -0.44
YBX3-212ENST00000542002 TMX4Q9H1E5 349 aaPredicted RBP12.32□□□□□ -0.44
YBX3-212ENST00000542002 BSDC1Q9NW68 430 aaPredicted RBP12.32□□□□□ -0.44
YBX3-212ENST00000542002 MINPP1Q9UNW1 487 aa12.32□□□□□ -0.44
YBX3-212ENST00000542002 CACNA1FO60840 1977 aa12.31□□□□□ -0.44
YBX3-212ENST00000542002 PPIP5K2O43314 1243 aa12.31□□□□□ -0.44
YBX3-212ENST00000542002 KIAA2012Q0VF49 1180 aa12.31□□□□□ -0.44
YBX3-212ENST00000542002 DPY19L2Q6NUT2 758 aa12.31□□□□□ -0.44
YBX3-212ENST00000542002 ANKRD44Q8N8A2 993 aa12.31□□□□□ -0.44
YBX3-212ENST00000542002 ARHGAP45Q92619 1136 aa12.31□□□□□ -0.44
YBX3-212ENST00000542002 ZNF594Q96JF6 807 aaPredicted RBP12.31□□□□□ -0.44
YBX3-212ENST00000542002 KCNQ5Q9NR82 932 aa12.31□□□□□ -0.44
YBX3-212ENST00000542002 PODXL2Q9NZ53 605 aa12.31□□□□□ -0.44
YBX3-212ENST00000542002 KDM2BQ8NHM5 1336 aa12.31□□□□□ -0.44
YBX3-212ENST00000542002 DUOX1Q9NRD9 1551 aa12.3□□□□□ -0.44
YBX3-212ENST00000542002 YDJCA8MPS7 323 aa12.3□□□□□ -0.44
YBX3-212ENST00000542002 C6orf229H3BNL8 230 aa12.3□□□□□ -0.44
YBX3-212ENST00000542002 RIMBP2O15034 1052 aa12.3□□□□□ -0.44
YBX3-212ENST00000542002 TRIM27P14373 513 aa12.3□□□□□ -0.44
YBX3-212ENST00000542002 SUPT20HQ8NEM7 779 aa12.3□□□□□ -0.44
YBX3-212ENST00000542002 JDP2Q8WYK2 163 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms