RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 NSFL1CQ9UNZ2 370 aaKnown RBP11.86□□□□□ -0.51
LMO3-227ENST00000541764 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.86□□□□□ -0.51
LMO3-227ENST00000541764 UBR2Q8IWV8 1755 aa11.86□□□□□ -0.51
LMO3-227ENST00000541764 ARFGEF2Q9Y6D5 1785 aa11.86□□□□□ -0.51
LMO3-227ENST00000541764 PAPPAQ13219 1627 aa11.86□□□□□ -0.51
LMO3-227ENST00000541764 WDR17Q8IZU2 1322 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 PCDH11XQ9BZA7 1347 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 PCDH11YQ9BZA8 1340 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 MYL6BP14649 208 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 KRT32Q14532 448 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 UVSSAQ2YD98 709 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 ADCK5Q3MIX3 580 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 TNNI3KQ59H18 835 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 USP48Q86UV5 1035 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 ZSCAN30Q86W11 494 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 FAM184AQ8NB25 1140 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 CCDC8Q9H0W5 538 aaPredicted RBP11.85□□□□□ -0.51
LMO3-227ENST00000541764 ATG3Q9NT62 314 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 FPGT-TNNI3KV9GXZ4 949 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 TNS2Q63HR2 1409 aa11.85□□□□□ -0.51
LMO3-227ENST00000541764 TAF5LO75529 589 aa11.84□□□□□ -0.51
LMO3-227ENST00000541764 MCM5P33992 734 aa11.84□□□□□ -0.51
LMO3-227ENST00000541764 UBE2HP62256 183 aa11.84□□□□□ -0.51
LMO3-227ENST00000541764 NOL8Q76FK4 1167 aaKnown RBP11.84□□□□□ -0.51
LMO3-227ENST00000541764 FAM227BQ96M60 508 aa11.84□□□□□ -0.51
LMO3-227ENST00000541764 HAUS7Q99871 368 aa11.84□□□□□ -0.51
LMO3-227ENST00000541764 FSD1Q9BTV5 496 aa11.84□□□□□ -0.51
LMO3-227ENST00000541764 TLR7Q9NYK1 1049 aaKnown RBP11.84□□□□□ -0.51
LMO3-227ENST00000541764 MTMR6Q9Y217 621 aa11.84□□□□□ -0.51
LMO3-227ENST00000541764 SOS2Q07890 1332 aaPredicted RBP11.84□□□□□ -0.51
LMO3-227ENST00000541764 A0A0D9SFI3 127 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 SYCE3A1L190 88 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 POTEMA6NI47 508 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 PRR29P0C7W0 189 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 PDCP20941 246 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 CCDC183Q5T5S1 534 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 BOLA2Q9H3K6 86 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 TSPY26PQ9H489 355 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 DBNLQ9UJU6 430 aaKnown RBP11.83□□□□□ -0.52
LMO3-227ENST00000541764 KCPQ6ZWJ8 1503 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 NUP188Q5SRE5 1749 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 A0A087WZG4 1122 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 LARGE1O95461 756 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 RPS6KB1P23443 525 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 GJB2P29033 226 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 FOXO4P98177 505 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 ST3GAL1Q11201 340 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 ME3Q16798 604 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 BLOC1S2Q6QNY1 142 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 ZCRB1Q8TBF4 217 aaKnown RBP11.83□□□□□ -0.52
LMO3-227ENST00000541764 CHAMP1Q96JM3 812 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 FBXO3Q9UK99 471 aa11.83□□□□□ -0.52
LMO3-227ENST00000541764 NOL7Q9UMY1 257 aaKnown RBP11.83□□□□□ -0.52
LMO3-227ENST00000541764 AFDNP55196 1824 aaKnown RBP11.82□□□□□ -0.52
LMO3-227ENST00000541764 PALLDQ8WX93 1383 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 COL5A2P05997 1499 aaPredicted RBP11.82□□□□□ -0.52
LMO3-227ENST00000541764 SH3TC1Q8TE82 1336 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 NBPF26B4DH59 902 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 CIAO1O76071 339 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 TFCP2Q12800 502 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 CHRNA2Q15822 529 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 NBPF14Q5TI25 921 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 FOXD4L5Q5VV16 416 aaPredicted RBP11.82□□□□□ -0.52
LMO3-227ENST00000541764 NBPF10Q6P3W6 841 aaKnown RBP11.82□□□□□ -0.52
LMO3-227ENST00000541764 BRINP3Q76B58 766 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 UBE3BQ7Z3V4 1068 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 NBPF15Q8N660 670 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 CCDC191Q8NCU4 936 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.82□□□□□ -0.52
LMO3-227ENST00000541764 FOXD4L4Q8WXT5 416 aaPredicted RBP11.82□□□□□ -0.52
LMO3-227ENST00000541764 DDX17Q92841 729 aaKnown RBP11.82□□□□□ -0.52
LMO3-227ENST00000541764 CARD10Q9BWT7 1032 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 SIL1Q9H173 461 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 TPCN1Q9ULQ1 816 aa11.82□□□□□ -0.52
LMO3-227ENST00000541764 ELP1O95163 1332 aa11.81□□□□□ -0.52
LMO3-227ENST00000541764 ZNF500O60304 480 aaPredicted RBP11.81□□□□□ -0.52
LMO3-227ENST00000541764 GADD45BO75293 160 aaPredicted RBP11.81□□□□□ -0.52
LMO3-227ENST00000541764 CPA1P15085 419 aa11.81□□□□□ -0.52
LMO3-227ENST00000541764 IL15P40933 162 aaPredicted RBP11.81□□□□□ -0.52
LMO3-227ENST00000541764 KCNJ4P48050 445 aa11.81□□□□□ -0.52
LMO3-227ENST00000541764 TRIM28Q13263 835 aaKnown RBP11.81□□□□□ -0.52
LMO3-227ENST00000541764 CCDC83Q8IWF9 413 aa11.81□□□□□ -0.52
LMO3-227ENST00000541764 KLHDC4Q8TBB5 520 aa11.81□□□□□ -0.52
LMO3-227ENST00000541764 CABLES1Q8TDN4 633 aa11.81□□□□□ -0.52
LMO3-227ENST00000541764 CWC25Q9NXE8 425 aaPredicted RBP11.81□□□□□ -0.52
LMO3-227ENST00000541764 XIRP1Q702N8 1843 aaKnown RBP11.81□□□□□ -0.52
LMO3-227ENST00000541764 SPEF2Q9C093 1822 aa11.81□□□□□ -0.52
LMO3-227ENST00000541764 TERF1P54274 439 aa11.8□□□□□ -0.52
LMO3-227ENST00000541764 TOB2Q14106 344 aaPredicted RBP11.8□□□□□ -0.52
LMO3-227ENST00000541764 ATG9AQ7Z3C6 839 aa11.8□□□□□ -0.52
LMO3-227ENST00000541764 ZNF589Q86UQ0 364 aaPredicted RBP11.8□□□□□ -0.52
LMO3-227ENST00000541764 KBTBD3Q8NAB2 608 aa11.8□□□□□ -0.52
LMO3-227ENST00000541764 HELLSQ9NRZ9 838 aa11.8□□□□□ -0.52
LMO3-227ENST00000541764 CNPY2Q9Y2B0 182 aa11.8□□□□□ -0.52
LMO3-227ENST00000541764 TJP1Q07157 1748 aa11.79□□□□□ -0.52
LMO3-227ENST00000541764 MCMDC2Q4G0Z9 681 aa11.79□□□□□ -0.52
LMO3-227ENST00000541764 LMBR1LQ6UX01 489 aa11.79□□□□□ -0.52
LMO3-227ENST00000541764 OTUD5Q96G74 571 aa11.79□□□□□ -0.52
LMO3-227ENST00000541764 ZNF609O15014 1411 aa11.79□□□□□ -0.52
LMO3-227ENST00000541764 HMGB1P09429 215 aaKnown RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms